FvH4_1g08900

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013373
Physical Location & Seq
Reverse (-)
4724781 .. 4726177
1397 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g08900.t1

Sequence Viewer

Length: 453 bp
ATGGCTCTCACCGACTCTCATCCTCATCCCCAAGCCTCCTCCAAACCAAACCCTCCTCTCCAAACCGAAGTCCTCTCCGTCAAATGCGACTCCTGCGGCTTCACAGAGGACTGCACCGCCGCTTACATCGCACGCGTCCGTGAGCGCTACCAAGGCCGCTGGATATGTGGGCTCTGCGTTGAGGCCGTGAAAGACGAGGCTCTCCGATCAGATAGGCTCATCTCTACTGAGGAGGCCCTCAACCGCCACATAAGAGTCTGCAAGAATTTCAGATCGTCTAGTAAGGAAAAAACAGAGCATCCTATTCTGGCTATGGGTCGGATTTTCCGCCGGAGCTTGGATACTCCGAGGGCTCTCCGGTCAAACTCCAGCTCGTCGCTCGGTCACGTCGAGAGGGTTCGTGGGCCGGCGCTGCTGAGGTCCGGAAGTTGCTTCCCTGCCCTCAATAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

151

Amino Acids

16.69

Weight (kDa)

9.3

Isoelectric Point (pI)

70.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 26 - 115 1.8e-36 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013373)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20670
fragaria_vesca FvH4_1g08900
malus_domestica MD02G1094400.v1.1 MD15G1219300.v1.1
prunus_persica Prupe.7G196600_v2.0.a1
pyrus_communis pycom02g07470 pycom15g19460
rosa_chinensis RchiOBHm_Chr2g0095361 RchiOBHm_Chr6g0253361
rosa_laevigata RLG00000016558
rosa_multiflora Rmu_ssc0000183.1_g000036
rosa_roxburghii Rroxscaffold_2G00146440
rosa_rugosa Rorug02G0050000
rosa_samantha Rh2AG098200 Rh2BG099400 Rh2CG101400 Rh2DG099000
rosa_wichuraiana Rw2G007410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 135
AccIII TCCGGA 1 cut(s) 422
AciI CCGC 6 cut(s) 96, 117, 120, 157, 244, 328
AcsI RAATTY 1 cut(s) 265
AfeI AGCGCT 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 337
AflIII ACRYGT 1 cut(s) 133
AjiI CACGTC 1 cut(s) 388
AluBI AGCT 3 cut(s) 336, 372, 450
AluI AGCT 3 cut(s) 336, 372, 450
Aor13HI TCCGGA 1 cut(s) 422
Aor51HI AGCGCT 1 cut(s) 146
AoxI GGCC 4 cut(s) 154, 183, 234, 404
ApeKI GCWGC 1 cut(s) 412
ApoI RAATTY 1 cut(s) 265
AspLEI GCGC 2 cut(s) 147, 412
AspS9I GGNCC 3 cut(s) 235, 404, 420
AvaII GGWCC 1 cut(s) 420
BanII GRGCYC 2 cut(s) 174, 355
BbvCI CCTCAGC 1 cut(s) 416
BbvI GCAGC 1 cut(s) 399
BceAI ACGGC 1 cut(s) 170
BciVI GTATCC 1 cut(s) 334
BfaI CTAG 1 cut(s) 279
BfoI RGCGCY 2 cut(s) 148, 413
BfuI GTATCC 1 cut(s) 334
BisI GCNGC 4 cut(s) 97, 120, 157, 413
BlsI GCNGC 4 cut(s) 98, 121, 158, 414
Bme18I GGWCC 1 cut(s) 420
BmgBI CACGTC 1 cut(s) 388
BmgT120I GGNCC 3 cut(s) 235, 404, 420
BmsI GCATC 1 cut(s) 307
BpmI CTGGAG 1 cut(s) 352
Bpu10I CCTNAGC 1 cut(s) 416
BsaJI CCNNGG 2 cut(s) 151, 347
BsaWI WCCGGW 2 cut(s) 357, 422
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse118I RCCGGY 1 cut(s) 406
BseAI TCCGGA 1 cut(s) 422
BseDI CCNNGG 2 cut(s) 151, 347
BseGI GGATG 3 cut(s) 19, 25, 298
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMII CTCAG 2 cut(s) 219, 407
BseRI GAGGAG 3 cut(s) 28, 45, 245
BseXI GCAGC 1 cut(s) 399
BsgI GTGCAG 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 4 cut(s) 156, 185, 236, 406
BsiSI CCGG 4 cut(s) 331, 358, 407, 423
BslI CCNNNNNNNGG 1 cut(s) 337
BsnI GGCC 4 cut(s) 156, 185, 236, 406
Bsp1286I GDGCHC 2 cut(s) 174, 355
Bsp13I TCCGGA 1 cut(s) 422
Bsp143I GATC 2 cut(s) 206, 272
BspACI CCGC 6 cut(s) 96, 117, 120, 157, 244, 328
BspANI GGCC 4 cut(s) 156, 185, 236, 406
BspCNI CTCAG 2 cut(s) 220, 408
BspEI TCCGGA 1 cut(s) 422
BspFNI CGCG 1 cut(s) 135
BsrFI RCCGGY 1 cut(s) 406
BssAI RCCGGY 1 cut(s) 406
BssECI CCNNGG 2 cut(s) 151, 347
BssMI GATC 2 cut(s) 206, 272
BssT1I CCWWGG 1 cut(s) 151
BstC8I GCNNGC 2 cut(s) 133, 408
BstDEI CTNAG 2 cut(s) 228, 416
BstF5I GGATG 3 cut(s) 19, 25, 298
BstFNI CGCG 1 cut(s) 135
BstH2I RGCGCY 2 cut(s) 148, 413
BstHHI GCGC 2 cut(s) 147, 412
BstKTI GATC 2 cut(s) 209, 275
BstMBI GATC 2 cut(s) 206, 272
BstMWI GCNNNNNNNGC 4 cut(s) 93, 128, 153, 412
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 399
BsuI GTATCC 1 cut(s) 334
BsuRI GGCC 4 cut(s) 156, 185, 236, 406
BtgZI GCGATG 1 cut(s) 112
BtrI CACGTC 1 cut(s) 388
BtsCI GGATG 3 cut(s) 19, 25, 298
Cac8I GCNNGC 2 cut(s) 133, 408
CfoI GCGC 2 cut(s) 147, 412
Cfr10I RCCGGY 1 cut(s) 406
Cfr13I GGNCC 3 cut(s) 235, 404, 420
CseI GACGC 1 cut(s) 124
DdeI CTNAG 2 cut(s) 228, 416
DpnI GATC 2 cut(s) 208, 274
DpnII GATC 2 cut(s) 206, 272
EciI GGCGGA 1 cut(s) 317
Eco130I CCWWGG 1 cut(s) 151
Eco24I GRGCYC 2 cut(s) 174, 355
Eco47I GGWCC 1 cut(s) 420
Eco47III AGCGCT 1 cut(s) 146
EcoO109I RGGNCCY 1 cut(s) 235
EcoT14I CCWWGG 1 cut(s) 151
EcoT38I GRGCYC 2 cut(s) 174, 355
ErhI CCWWGG 1 cut(s) 151
FaiI YATR 3 cut(s) 166, 251, 314
Fnu4HI GCNGC 4 cut(s) 97, 120, 157, 413
FokI GGATG 3 cut(s) 6, 12, 285
FriOI GRGCYC 2 cut(s) 174, 355
Fsp4HI GCNGC 4 cut(s) 97, 120, 157, 413
FspBI CTAG 1 cut(s) 279
GlaI GCGC 2 cut(s) 146, 411
GluI GCNGC 4 cut(s) 97, 120, 157, 413
GsuI CTGGAG 1 cut(s) 352
HaeII RGCGCY 2 cut(s) 148, 413
HaeIII GGCC 4 cut(s) 156, 185, 236, 406
HapII CCGG 4 cut(s) 331, 358, 407, 423
HgaI GACGC 1 cut(s) 124
HhaI GCGC 2 cut(s) 147, 412
Hin6I GCGC 2 cut(s) 145, 410
HinP1I GCGC 2 cut(s) 145, 410
HinfI GANTC 3 cut(s) 14, 89, 255
HpaII CCGG 4 cut(s) 331, 358, 407, 423
Hpy188I TCNGA 5 cut(s) 206, 211, 272, 321, 348
Hpy188III TCNNGA 2 cut(s) 391, 423
Hpy99I CGWCG 2 cut(s) 379, 392
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 2 cut(s) 114, 261
HpyF10VI GCNNNNNNNGC 4 cut(s) 93, 128, 153, 412
HpyF3I CTNAG 2 cut(s) 228, 416
HpySE526I ACGT 1 cut(s) 387
HspAI GCGC 2 cut(s) 145, 410
Kpn2I TCCGGA 1 cut(s) 422
KroI GCCGGC 1 cut(s) 406
KroNI GCCGGC 1 cut(s) 408
Kzo9I GATC 2 cut(s) 206, 272
LmnI GCTCC 1 cut(s) 333
LpnPI CCDG 8 cut(s) 106, 145, 293, 344, 371, 382, 420, 436
Lsp1109I GCAGC 1 cut(s) 399
LweI GCATC 1 cut(s) 307
MaeI CTAG 1 cut(s) 279
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 1 cut(s) 383
MalI GATC 2 cut(s) 208, 274
MboI GATC 2 cut(s) 206, 272
MhlI GDGCHC 2 cut(s) 174, 355
MluCI AATT 1 cut(s) 265
MluI ACGCGT 1 cut(s) 133
MlyI GAGTC 3 cut(s) 8, 83, 264
MmeI TCCRAC 1 cut(s) 299
MroI TCCGGA 1 cut(s) 422
MroNI GCCGGC 1 cut(s) 406
MspA1I CMGCKG 1 cut(s) 159
MspI CCGG 4 cut(s) 331, 358, 407, 423
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 4 cut(s) 93, 128, 153, 412
NaeI GCCGGC 1 cut(s) 408
NdeII GATC 2 cut(s) 206, 272
NgoMIV GCCGGC 1 cut(s) 406
NmuCI GTSAC 1 cut(s) 383
PcsI WCGNNNNNNNCGW 1 cut(s) 387
PdiI GCCGGC 1 cut(s) 408
PkrI GCNGC 4 cut(s) 98, 121, 158, 414
PleI GAGTC 3 cut(s) 8, 83, 263
PpsI GAGTC 3 cut(s) 8, 83, 263
PspPI GGNCC 3 cut(s) 235, 404, 420
SatI GCNGC 4 cut(s) 97, 120, 157, 413
Sau3AI GATC 2 cut(s) 206, 272
Sau96I GGNCC 3 cut(s) 235, 404, 420
SchI GAGTC 3 cut(s) 8, 83, 264
SduI GDGCHC 2 cut(s) 174, 355
SetI ASST 5 cut(s) 338, 374, 390, 422, 452
SfaNI GCATC 1 cut(s) 307
SinI GGWCC 1 cut(s) 420
Sse9I AATT 1 cut(s) 265
SsiI CCGC 6 cut(s) 96, 117, 120, 157, 244, 328
SspMI CTAG 1 cut(s) 279
StyI CCWWGG 1 cut(s) 151
TaiI ACGT 1 cut(s) 390
TaqI TCGA 1 cut(s) 390
TaqII GACCGA 1 cut(s) 371
TasI AATT 1 cut(s) 265
TauI GCSGC 3 cut(s) 99, 122, 159
TseFI GTSAC 1 cut(s) 383
TseI GCWGC 1 cut(s) 412
Tsp45I GTSAC 1 cut(s) 383
TspGWI ACGGA 2 cut(s) 67, 128
VpaK11BI GGWCC 1 cut(s) 420
XapI RAATTY 1 cut(s) 265
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.