Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007414

Physical Location & Seq

Genomic Coordinates Reverse (-)

7340055 .. 7341959

Gene Structure 1905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G22140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGAAGGCATTGAATCTGGGTCTAAACAAGGAAAGAGAGTGGTTGTGATCGGCGGCGGAATCGCCGGCTCACTCGCCGCGAAATTGCTTCAGTTCGATGCTGAAGTCACACTCATCGATCCGAAGGAGTATTTTGAGATTACATGGGCAAGTTTGAGATCCATGGTGGAGCCTAAGTTTGCTGAGAGAACAGTGATTAACCACAAGAGTTACTTGAAACAAGGCCGTCTTGTAACTTCTCCGGCGATCAATATCACAGAGAGTGATGTTATGACTGAAGATGGATCTGTGATTGGATATGATTATCTTGTGATTGCTACAGGTCACAATGACTTGTTCCCTAAAACTAGACAAGAGAAGCTGTCACATTATCAATCTGAATATGAGAAGATAAAATCTTCTGGATCAGTTTTGATTGTTGGTGGAGGTCCATCTGGTGTGGAGCTAGCTGCGGAAATCGCGGTTGATTTCCCGGAGAAGAAGGTTACTCTGGTGCATAAAGGACCAAGATTGCTTGAGTTTGTTGGACAAAAAGCTGCTGATAAAGCATCTGATTGGTTAGAATCAAAGAAAGTGGAAGTTATATTGAACCAATCTGTGGATTTGAGTTCAGCTTCGGATGGAAACAAAATATACCGGACTTCAGGAGGAGAAACTATACACGCAGATATTCACTTCCTCTGTGTTGGGAAACCTTTGTCTTCTCAATGGCTCAATGGAACTGTTCTGAAAGATAGCTTGGATGGTAAAGGAAGAGTCATGGTCGATGAGTACTTGCGGATTAGAGGTCGAAGCAATGTATTCGCTGTTGGAGATATCACTAATATCCCTGAGATGAAACAAGGATATATAGCAGAGACTCATGCTAATGTCGTTGTGAAGAACATAAAGGTAATGATGTCAGGTGGGAAAAAGAAGAAGATGTCGACTTACAAGCCCGGTCCAGAGTTGGCCATTGTATCTTTAGGAAGAAAGGACTCGGTGGCTCAGTTTCCGTTTGTGACAGTTGTTGGTTGCCTCCCTGGTTTGATCAAGTCTAAGGATCTGTTTGTGGGGAAGACAAGGAAGGCAAGAGGCCTAAATCCTAAACTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

365

Amino Acids

39.71

Weight (kDa)

9.23

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	13 - 278	5.9e-35	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3	PF13738	90 - 224	7.1e-06	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox	PF00070	136 - 204	2.9e-09	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44190 AT3G44190 AT5G22140 AT5G22140
fragaria_vesca	FvH4_3g26670 FvH4_3g26670 FvH4_3g26670
malus_domestica	MD00G1071200.v1.1 MD02G1258500.v1.1
prunus_persica	Prupe.2G072100_v2.0.a1 Prupe.2G072100_v2.0.a1 Prupe.6G143400_v2.0.a1
pyrus_communis	pycom02g21970 pycom11g14620
rosa_chinensis	RchiOBHm_Chr5g0048121
rosa_laevigata	RLG00000034499
rosa_multiflora	Rmu_sc0001408.1_g000021
rosa_roxburghii	Rroxscaffold_1G00033780
rosa_rugosa	Rorug05G0236700 Rorug05G0236800
rosa_samantha	Rh5AG315900 Rh5BG326200 Rh5CG352700 Rh5DG337400
rosa_wichuraiana	Rw5G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	598
AccI	GTMKAC	1 cut(s)	926
AccII	CGCG	2 cut(s)	80, 461
AciI	CCGC	6 cut(s)	54, 57, 78, 452, 461, 778
AclWI	GGATC	5 cut(s)	113, 153, 292, 412, 1050
AcoI	YGGCCR	1 cut(s)	951
AcuI	CTGAAG	4 cut(s)	74, 123, 297, 627
AfaI	GTAC	1 cut(s)	773
AfiI	CCNNNNNNNGG	1 cut(s)	598
AgsI	TTSAA	3 cut(s)	14, 217, 589
AjnI	CCWGG	1 cut(s)	1021
AjuI	GAANNNNNNNTTGG	2 cut(s)	722, 754
AluBI	AGCT	6 cut(s)	361, 445, 449, 536, 614, 738
AluI	AGCT	6 cut(s)	361, 445, 449, 536, 614, 738
Alw26I	GTCTC	1 cut(s)	851
AlwI	GGATC	5 cut(s)	113, 153, 292, 412, 1050
AoxI	GGCC	3 cut(s)	223, 951, 1075
ApeKI	GCWGC	2 cut(s)	449, 536
AspS9I	GGNCC	3 cut(s)	428, 503, 941
AsuC2I	CCSGG	2 cut(s)	473, 939
AsuNHI	GCTAGC	1 cut(s)	445
AvaII	GGWCC	3 cut(s)	428, 503, 941
BalI	TGGCCA	1 cut(s)	953
BbsI	GAAGAC	2 cut(s)	693, 1064
BbvI	GCAGC	2 cut(s)	436, 523
BccI	CCATC	4 cut(s)	275, 439, 614, 737
BceAI	ACGGC	1 cut(s)	210
BcgI	CGANNNNNNTGC	2 cut(s)	784, 818
BciT130I	CCWGG	1 cut(s)	1023
BclI	TGATCA	1 cut(s)	1029
BcnI	CCSGG	2 cut(s)	473, 939
BcoDI	GTCTC	1 cut(s)	851
BfaI	CTAG	2 cut(s)	348, 446
BfmI	CTRYAG	1 cut(s)	318
BisI	GCNGC	4 cut(s)	55, 78, 450, 537
BlsI	GCNGC	4 cut(s)	56, 79, 451, 538
BmcAI	AGTACT	1 cut(s)	773
Bme1390I	CCNGG	3 cut(s)	473, 939, 1023
Bme18I	GGWCC	3 cut(s)	428, 503, 941
BmgT120I	GGNCC	3 cut(s)	428, 503, 941
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	3 cut(s)	473, 939, 1023
BmsI	GCATC	2 cut(s)	88, 557
BmtI	GCTAGC	1 cut(s)	449
BpiI	GAAGAC	2 cut(s)	693, 1064
BpuEI	CTTGAG	1 cut(s)	536
BpuMI	CCSGG	2 cut(s)	473, 939
Bsa29I	ATCGAT	1 cut(s)	117
BsaBI	GATNNNNATC	1 cut(s)	251
BsaJI	CCNNGG	2 cut(s)	162, 1021
BsaWI	WCCGGW	1 cut(s)	636
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	1 cut(s)	598
Bse118I	RCCGGY	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	802
Bse8I	GATNNNNATC	1 cut(s)	251
BseBI	CCWGG	1 cut(s)	1023
BseCI	ATCGAT	1 cut(s)	117
BseDI	CCNNGG	2 cut(s)	162, 1021
BseGI	GGATG	2 cut(s)	625, 748
BseJI	GATNNNNATC	1 cut(s)	251
BseLI	CCNNNNNNNGG	1 cut(s)	598
BseMI	GCAATG	1 cut(s)	802
BseMII	CTCAG	3 cut(s)	174, 822, 1001
BseRI	GAGGAG	1 cut(s)	663
BseXI	GCAGC	2 cut(s)	436, 523
Bsh1236I	CGCG	2 cut(s)	80, 461
BshFI	GGCC	3 cut(s)	225, 953, 1077
BshVI	ATCGAT	1 cut(s)	117
BsiSI	CCGG	5 cut(s)	66, 242, 473, 637, 939
BslI	CCNNNNNNNGG	1 cut(s)	598
BsmAI	GTCTC	1 cut(s)	851
BsnI	GGCC	3 cut(s)	225, 953, 1077
Bsp143I	GATC	8 cut(s)	48, 118, 158, 246, 284, 404, 1029, 1042
Bsp19I	CCATGG	1 cut(s)	162
BspACI	CCGC	6 cut(s)	54, 57, 78, 452, 461, 778
BspANI	GGCC	3 cut(s)	225, 953, 1077
BspCNI	CTCAG	3 cut(s)	175, 823, 1000
BspDI	ATCGAT	1 cut(s)	117
BspFNI	CGCG	2 cut(s)	80, 461
BspLI	GGNNCC	1 cut(s)	171
BspOI	GCTAGC	1 cut(s)	449
BspPI	GGATC	5 cut(s)	113, 153, 292, 412, 1050
BsrDI	GCAATG	1 cut(s)	802
BsrFI	RCCGGY	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	2 cut(s)	162, 1021
BssMI	GATC	8 cut(s)	48, 118, 158, 246, 284, 404, 1029, 1042
BssT1I	CCWWGG	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	1023
Bst4CI	ACNGT	3 cut(s)	193, 724, 1006
Bst6I	CTCTTC	1 cut(s)	748
BstC8I	GCNNGC	2 cut(s)	67, 447
BstDEI	CTNAG	5 cut(s)	174, 183, 831, 987, 1038
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	2 cut(s)	625, 748
BstFNI	CGCG	2 cut(s)	80, 461
BstKTI	GATC	8 cut(s)	51, 121, 161, 249, 287, 407, 1032, 1045
BstMAI	GTCTC	1 cut(s)	851
BstMBI	GATC	8 cut(s)	48, 118, 158, 246, 284, 404, 1029, 1042
BstMWI	GCNNNNNNNGC	2 cut(s)	458, 545
BstNI	CCWGG	1 cut(s)	1023
BstSCI	CCNGG	3 cut(s)	471, 937, 1021
BstSFI	CTRYAG	1 cut(s)	318
BstUI	CGCG	2 cut(s)	80, 461
BstV1I	GCAGC	2 cut(s)	436, 523
BstV2I	GAAGAC	2 cut(s)	693, 1064
BstX2I	RGATCY	3 cut(s)	158, 284, 1042
BstYI	RGATCY	3 cut(s)	158, 284, 1042
Bsu15I	ATCGAT	1 cut(s)	117
BsuRI	GGCC	3 cut(s)	225, 953, 1077
BsuTUI	ATCGAT	1 cut(s)	117
BtgI	CCRYGG	1 cut(s)	162
BtsCI	GGATG	2 cut(s)	625, 748
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	2 cut(s)	67, 447
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	3 cut(s)	428, 503, 941
ClaI	ATCGAT	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	772
CspCI	CAANNNNNGTGG	2 cut(s)	555, 590
CviAII	CATG	4 cut(s)	144, 163, 760, 863
CviQI	GTAC	1 cut(s)	772
DdeI	CTNAG	5 cut(s)	174, 183, 831, 987, 1038
DpnI	GATC	8 cut(s)	50, 120, 160, 248, 286, 406, 1031, 1044
DpnII	GATC	8 cut(s)	48, 118, 158, 246, 284, 404, 1029, 1042
EaeI	YGGCCR	1 cut(s)	951
Eam1104I	CTCTTC	1 cut(s)	748
EarI	CTCTTC	1 cut(s)	748
EciI	GGCGGA	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	162
Eco147I	AGGCCT	1 cut(s)	1077
Eco32I	GATATC	1 cut(s)	817
Eco47I	GGWCC	3 cut(s)	428, 503, 941
Eco57I	CTGAAG	4 cut(s)	74, 123, 297, 627
EcoRII	CCWGG	1 cut(s)	1021
EcoRV	GATATC	1 cut(s)	817
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	4 cut(s)	147, 166, 763, 866
FalI	AAGNNNNNCTT	4 cut(s)	197, 229, 213, 245
FatI	CATG	4 cut(s)	143, 162, 759, 862
FbaI	TGATCA	1 cut(s)	1029
FblI	GTMKAC	1 cut(s)	926
Fnu4HI	GCNGC	4 cut(s)	55, 78, 450, 537
FokI	GGATG	2 cut(s)	632, 755
Fsp4HI	GCNGC	4 cut(s)	55, 78, 450, 537
FspBI	CTAG	2 cut(s)	348, 446
GluI	GCNGC	4 cut(s)	55, 78, 450, 537
HaeIII	GGCC	3 cut(s)	225, 953, 1077
HapII	CCGG	5 cut(s)	66, 242, 473, 637, 939
Hin1II	CATG	4 cut(s)	147, 166, 763, 866
HincII	GTYRAC	1 cut(s)	927
HindII	GTYRAC	1 cut(s)	927
HinfI	GANTC	6 cut(s)	14, 60, 563, 756, 859, 977
HpaII	CCGG	5 cut(s)	66, 242, 473, 637, 939
Hpy166II	GTNNAC	1 cut(s)	927
Hpy188I	TCNGA	5 cut(s)	123, 379, 553, 619, 729
Hpy188III	TCNNGA	3 cut(s)	402, 645, 944
Hpy8I	GTNNAC	1 cut(s)	927
HpyAV	CCTTC	3 cut(s)	118, 475, 1060
HpyCH4III	ACNGT	3 cut(s)	193, 724, 1006
HpyCH4V	TGCA	1 cut(s)	496
HpyF10VI	GCNNNNNNNGC	2 cut(s)	458, 545
HpyF3I	CTNAG	5 cut(s)	174, 183, 831, 987, 1038
Hsp92II	CATG	4 cut(s)	147, 166, 763, 866
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
Ksp22I	TGATCA	1 cut(s)	1029
Kzo9I	GATC	8 cut(s)	48, 118, 158, 246, 284, 404, 1029, 1042
LmnI	GCTCC	2 cut(s)	169, 442
Lsp1109I	GCAGC	2 cut(s)	436, 523
LweI	GCATC	2 cut(s)	88, 557
MaeI	CTAG	2 cut(s)	348, 446
MaeIII	GTNAC	7 cut(s)	106, 209, 232, 323, 363, 484, 1000
MalI	GATC	8 cut(s)	50, 120, 160, 248, 286, 406, 1031, 1044
MboI	GATC	8 cut(s)	48, 118, 158, 246, 284, 404, 1029, 1042
MflI	RGATCY	3 cut(s)	158, 284, 1042
MlsI	TGGCCA	1 cut(s)	953
MluCI	AATT	1 cut(s)	83
MluNI	TGGCCA	1 cut(s)	953
MlyI	GAGTC	3 cut(s)	765, 853, 971
MmeI	TCCRAC	2 cut(s)	505, 790
MnlI	CCTC	6 cut(s)	419, 641, 689, 779, 1028, 1067
Mox20I	TGGCCA	1 cut(s)	953
MroNI	GCCGGC	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	953
MseI	TTAA	1 cut(s)	198
MslI	CAYNNNNRTG	1 cut(s)	867
Msp20I	TGGCCA	1 cut(s)	953
MspI	CCGG	5 cut(s)	66, 242, 473, 637, 939
MspR9I	CCNGG	3 cut(s)	473, 939, 1023
MvaI	CCWGG	1 cut(s)	1023
MvnI	CGCG	2 cut(s)	80, 461
MwoI	GCNNNNNNNGC	2 cut(s)	458, 545
NaeI	GCCGGC	1 cut(s)	67
NciI	CCSGG	2 cut(s)	473, 939
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	8 cut(s)	48, 118, 158, 246, 284, 404, 1029, 1042
NgoMIV	GCCGGC	1 cut(s)	65
NheI	GCTAGC	1 cut(s)	445
NlaIII	CATG	4 cut(s)	147, 166, 763, 866
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	4 cut(s)	106, 323, 363, 1000
PceI	AGGCCT	1 cut(s)	1077
PdiI	GCCGGC	1 cut(s)	67
PfeI	GAWTC	3 cut(s)	14, 60, 563
PflMI	CCANNNNNTGG	1 cut(s)	598
PfoI	TCCNGGA	1 cut(s)	471
PkrI	GCNGC	4 cut(s)	56, 79, 451, 538
PleI	GAGTC	3 cut(s)	764, 853, 971
PpsI	GAGTC	3 cut(s)	764, 853, 971
Psp6I	CCWGG	1 cut(s)	1021
PspGI	CCWGG	1 cut(s)	1021
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	3 cut(s)	428, 503, 941
PsuI	RGATCY	3 cut(s)	158, 284, 1042
RsaI	GTAC	1 cut(s)	773
RsaNI	GTAC	1 cut(s)	772
RseI	CAYNNNNRTG	1 cut(s)	867
SalI	GTCGAC	1 cut(s)	925
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	4 cut(s)	55, 78, 450, 537
Sau3AI	GATC	8 cut(s)	48, 118, 158, 246, 284, 404, 1029, 1042
Sau96I	GGNCC	3 cut(s)	428, 503, 941
ScaI	AGTACT	1 cut(s)	773
SchI	GAGTC	3 cut(s)	765, 853, 971
ScrFI	CCNGG	3 cut(s)	473, 939, 1023
SfaNI	GCATC	2 cut(s)	88, 557
SfcI	CTRYAG	1 cut(s)	318
SinI	GGWCC	3 cut(s)	428, 503, 941
SmiMI	CAYNNNNRTG	1 cut(s)	867
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	1 cut(s)	83
SseBI	AGGCCT	1 cut(s)	1077
SsiI	CCGC	6 cut(s)	54, 57, 78, 452, 461, 778
SspMI	CTAG	2 cut(s)	348, 446
StuI	AGGCCT	1 cut(s)	1077
StyD4I	CCNGG	3 cut(s)	471, 937, 1021
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	3 cut(s)	193, 724, 1006
TaqI	TCGA	5 cut(s)	96, 117, 765, 790, 926
TasI	AATT	1 cut(s)	83
TatI	WGTACW	1 cut(s)	771
TauI	GCSGC	2 cut(s)	57, 80
TfiI	GAWTC	3 cut(s)	14, 60, 563
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	4 cut(s)	106, 323, 363, 1000
TseI	GCWGC	2 cut(s)	449, 536
Tsp45I	GTSAC	4 cut(s)	106, 323, 363, 1000
TspDTI	ATGAA	1 cut(s)	851
TspGWI	ACGGA	1 cut(s)	984
TspRI	CASTG	1 cut(s)	198
Van91I	CCANNNNNTGG	1 cut(s)	598
VpaK11BI	GGWCC	3 cut(s)	428, 503, 941
XmiI	GTMKAC	1 cut(s)	926
XspI	CTAG	2 cut(s)	348, 446
ZrmI	AGTACT	1 cut(s)	773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.