Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007414

Physical Location & Seq

Genomic Coordinates Reverse (-)

19747856 .. 19751770

Gene Structure 3915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g26670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGAGTTGGGTGGCGGAGAGAAAAAACGAGTGGTGGTGGTCGGAGGCGGCGTCGCTGGCTCTCTTCTTGCAAAGTCTCTGCAATTCAACGCTGATTTCACCCTCATTGATAAGAAGGAATATTTTGAGATTCCATGGGCAAGCTTGAGGACCATGGTGGAGCCCTCATTTGGGGAGAGATCTGTGATCAACCATAGAGATTACCTCACTAATGGCCATCTTATTACATCCGGAGCAATCAATATCACTGACACTGAAGTGTTGACTGGAGAAGGCCGTCTGATTCCCTATGACTACCTTGTCATTGCCACTGGCCATGCAGATTCTGTTCCAAAAAGTAAGACTGGGAGGCTTAAGGAATTCCAAGAAGATAATCAGAAGATAAGATCAGCTAATTCCATTTTGATTGTTGGAGGAGGACCTACTGGTGTAGAACTTGCTGGAGAAATTGCTACTGATTTTCCAGATAAGAAAATTACTCTGGTTCATACTGGATCAAGGTTGTTGGAATTCATTGGACCAAAAGCTGCAGACAAGACTCTTAATTGGTTTCAGTCAAGGAATGTTGAAGTGATATTGGAGCAATCAGTCAATTTAAACAATATCACTGACTCACCTGGAAGCAAAACCTATCAGACTTCAGAAGGACAAACGTTCCAAGCAGATTGTCATTTCTTCTGCATAGGGAAACGTCTCGGTTCAGCATGGCTCAAAGAAACAGTTCTGAAGAGTAGCTTGGATATTCATGGGAGATTGGTAGTTGACCAGAATTTGAGAGTCAAAGGGAGAAAAAACGTCTTTGCAATCGGAGACATTACTAATATTCCAGAAATCAAGCAAGGGTATTTGGCGCAAAAACAGGCTTTGGTGGCTGCAAAGAACTTAAAGCTATTACTTGCAGGTGGAAGAGAAAGTAAAATGGCAACTTATGAAGCTCATTCGGGGGTGGCACTTGTTTCACTAGGAAGGAAACATGGGGTTGCACAGTTCCCATACACTACTTGTATTGGACGCATTCCTGGACTGATCAAATCTAAAGATCTTTTTGTGGGGAAGACCAGGAAGCAGCTGGGGCTAGAAGAAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

363

Amino Acids

39.45

Weight (kDa)

9.21

Isoelectric Point (pI)

30.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	10 - 288	5.6e-37	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox	PF00070	134 - 198	1.5e-07	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44190 AT3G44190 AT5G22140 AT5G22140
fragaria_vesca	FvH4_3g26670 FvH4_3g26670 FvH4_3g26670
malus_domestica	MD00G1071200.v1.1 MD02G1258500.v1.1
prunus_persica	Prupe.2G072100_v2.0.a1 Prupe.2G072100_v2.0.a1 Prupe.6G143400_v2.0.a1
pyrus_communis	pycom02g21970 pycom11g14620
rosa_chinensis	RchiOBHm_Chr5g0048121
rosa_laevigata	RLG00000034499
rosa_multiflora	Rmu_sc0001408.1_g000021
rosa_roxburghii	Rroxscaffold_1G00033780
rosa_rugosa	Rorug05G0236700 Rorug05G0236800
rosa_samantha	Rh5AG315900 Rh5BG326200 Rh5CG352700 Rh5DG337400
rosa_wichuraiana	Rw5G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	890
AasI	GACNNNNNNGTC	1 cut(s)	299
Acc36I	ACCTGC	1 cut(s)	890
AccIII	TCCGGA	1 cut(s)	230
AciI	CCGC	2 cut(s)	15, 48
AclI	AACGTT	1 cut(s)	653
AclWI	GGATC	1 cut(s)	502
AcoI	YGGCCR	2 cut(s)	214, 313
AcsI	RAATTY	3 cut(s)	359, 509, 769
AcuI	CTGAAG	3 cut(s)	276, 624, 746
AcyI	GRCGYC	1 cut(s)	51
AfiI	CCNNNNNNNGG	2 cut(s)	170, 171
AflII	CTTAAG	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	88, 569
AjnI	CCWGG	3 cut(s)	616, 1018, 1058
AjuI	GAANNNNNNNTTGG	2 cut(s)	719, 751
AleI	CACNNNNGTG	1 cut(s)	257
AluBI	AGCT	7 cut(s)	144, 392, 527, 735, 889, 935, 1069
AluI	AGCT	7 cut(s)	144, 392, 527, 735, 889, 935, 1069
Alw26I	GTCTC	3 cut(s)	81, 698, 804
AlwI	GGATC	1 cut(s)	502
AlwNI	CAGNNNCTG	1 cut(s)	326
Aor13HI	TCCGGA	1 cut(s)	230
AoxI	GGCC	3 cut(s)	214, 274, 313
ApeKI	GCWGC	3 cut(s)	527, 872, 1066
ApoI	RAATTY	3 cut(s)	359, 509, 769
Asp700I	GAANNNNTTC	1 cut(s)	720
AspLEI	GCGC	1 cut(s)	853
AspS9I	GGNCC	3 cut(s)	150, 419, 518
AsuHPI	GGTGA	2 cut(s)	91, 606
AvaII	GGWCC	3 cut(s)	150, 419, 518
BalI	TGGCCA	2 cut(s)	216, 315
BanII	GRGCYC	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	1061
BbvI	GCAGC	3 cut(s)	514, 859, 1078
BccI	CCATC	1 cut(s)	225
BceAI	ACGGC	1 cut(s)	261
BciT130I	CCWGG	3 cut(s)	618, 1020, 1060
BclI	TGATCA	2 cut(s)	186, 1026
BcoDI	GTCTC	3 cut(s)	81, 698, 804
BfaI	CTAG	3 cut(s)	962, 1076, 1087
BfmI	CTRYAG	1 cut(s)	528
BfrI	CTTAAG	1 cut(s)	353
BfuAI	ACCTGC	1 cut(s)	890
BglII	AGATCT	2 cut(s)	179, 1039
BisI	GCNGC	4 cut(s)	49, 528, 873, 1067
BlsI	GCNGC	4 cut(s)	50, 529, 874, 1068
Bme1390I	CCNGG	3 cut(s)	618, 1020, 1060
Bme18I	GGWCC	3 cut(s)	150, 419, 518
BmgT120I	GGNCC	3 cut(s)	150, 419, 518
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	3 cut(s)	618, 1020, 1060
BmrI	ACTGGG	1 cut(s)	354
BmuI	ACTGGG	1 cut(s)	354
BpiI	GAAGAC	1 cut(s)	1061
BplI	GAGNNNNNCTC	2 cut(s)	189, 221
BpmI	CTGGAG	2 cut(s)	288, 462
BpuEI	CTTGAG	1 cut(s)	166
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	2 cut(s)	134, 153
BsaWI	WCCGGW	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 171
Bse1I	ACTGG	5 cut(s)	271, 316, 349, 430, 496
Bse3DI	GCAATG	1 cut(s)	303
BseAI	TCCGGA	1 cut(s)	230
BseBI	CCWGG	3 cut(s)	618, 1020, 1060
BseDI	CCNNGG	2 cut(s)	134, 153
BseGI	GGATG	1 cut(s)	227
BseLI	CCNNNNNNNGG	2 cut(s)	170, 171
BseMI	GCAATG	1 cut(s)	303
BseNI	ACTGG	5 cut(s)	271, 316, 349, 430, 496
BseRI	GAGGAG	1 cut(s)	429
BseXI	GCAGC	3 cut(s)	514, 859, 1078
BseYI	CCCAGC	1 cut(s)	1069
BshFI	GGCC	3 cut(s)	216, 276, 315
BsiSI	CCGG	1 cut(s)	231
BslI	CCNNNNNNNGG	2 cut(s)	170, 171
BsmAI	GTCTC	3 cut(s)	81, 698, 804
BsmBI	CGTCTC	1 cut(s)	698
BsmI	GAATGC	1 cut(s)	1014
BsnI	GGCC	3 cut(s)	216, 276, 315
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp13I	TCCGGA	1 cut(s)	230
Bsp143I	GATC	6 cut(s)	179, 186, 386, 494, 1026, 1039
Bsp19I	CCATGG	2 cut(s)	134, 153
BspACI	CCGC	2 cut(s)	15, 48
BspANI	GGCC	3 cut(s)	216, 276, 315
BspEI	TCCGGA	1 cut(s)	230
BspLI	GGNNCC	1 cut(s)	162
BspMAI	CTGCAG	1 cut(s)	532
BspMI	ACCTGC	1 cut(s)	890
BspPI	GGATC	1 cut(s)	502
BspTI	CTTAAG	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	303
BsrI	ACTGG	5 cut(s)	271, 316, 349, 430, 496
BssECI	CCNNGG	2 cut(s)	134, 153
BssMI	GATC	6 cut(s)	179, 186, 386, 494, 1026, 1039
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	2 cut(s)	134, 153
Bst2UI	CCWGG	3 cut(s)	618, 1020, 1060
Bst4CI	ACNGT	2 cut(s)	721, 987
Bst6I	CTCTTC	3 cut(s)	69, 722, 901
BstACI	GRCGYC	1 cut(s)	51
BstAFI	CTTAAG	1 cut(s)	353
BstC8I	GCNNGC	2 cut(s)	58, 142
BstDSI	CCRYGG	2 cut(s)	134, 153
BstF5I	GGATG	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	853
BstKTI	GATC	6 cut(s)	182, 189, 389, 497, 1029, 1042
BstMAI	GTCTC	3 cut(s)	81, 698, 804
BstMBI	GATC	6 cut(s)	179, 186, 386, 494, 1026, 1039
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 869, 1072
BstNI	CCWGG	3 cut(s)	618, 1020, 1060
BstSCI	CCNGG	3 cut(s)	616, 1018, 1058
BstSFI	CTRYAG	1 cut(s)	528
BstV1I	GCAGC	3 cut(s)	514, 859, 1078
BstV2I	GAAGAC	1 cut(s)	1061
BstX2I	RGATCY	2 cut(s)	179, 1039
BstYI	RGATCY	2 cut(s)	179, 1039
BsuRI	GGCC	3 cut(s)	216, 276, 315
BtgI	CCRYGG	2 cut(s)	134, 153
BtsCI	GGATG	1 cut(s)	227
BtsIMutI	CAGTG	4 cut(s)	246, 252, 309, 606
BveI	ACCTGC	1 cut(s)	890
Cac8I	GCNNGC	2 cut(s)	58, 142
CaiI	CAGNNNCTG	1 cut(s)	326
CfoI	GCGC	1 cut(s)	853
Cfr13I	GGNCC	3 cut(s)	150, 419, 518
CseI	GACGC	2 cut(s)	40, 1020
CviAII	CATG	6 cut(s)	135, 154, 317, 705, 746, 974
DpnI	GATC	6 cut(s)	181, 188, 388, 496, 1028, 1041
DpnII	GATC	6 cut(s)	179, 186, 386, 494, 1026, 1039
DraI	TTTAAA	1 cut(s)	597
DrdI	GACNNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	299
EaeI	YGGCCR	2 cut(s)	214, 313
Eam1104I	CTCTTC	3 cut(s)	69, 722, 901
EarI	CTCTTC	3 cut(s)	69, 722, 901
EciI	GGCGGA	1 cut(s)	30
Eco130I	CCWWGG	2 cut(s)	134, 153
Eco24I	GRGCYC	1 cut(s)	165
Eco47I	GGWCC	3 cut(s)	150, 419, 518
Eco57I	CTGAAG	3 cut(s)	276, 624, 746
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRI	GAATTC	2 cut(s)	359, 509
EcoRII	CCWGG	3 cut(s)	616, 1018, 1058
EcoT14I	CCWWGG	2 cut(s)	134, 153
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	2 cut(s)	134, 153
Esp3I	CGTCTC	1 cut(s)	698
FaeI	CATG	6 cut(s)	138, 157, 320, 708, 749, 977
FalI	AAGNNNNNCTT	2 cut(s)	719, 751
FatI	CATG	6 cut(s)	134, 153, 316, 704, 745, 973
FbaI	TGATCA	2 cut(s)	186, 1026
Fnu4HI	GCNGC	4 cut(s)	49, 528, 873, 1067
FokI	GGATG	1 cut(s)	214
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	4 cut(s)	49, 528, 873, 1067
FspBI	CTAG	3 cut(s)	962, 1076, 1087
GlaI	GCGC	1 cut(s)	852
GluI	GCNGC	4 cut(s)	49, 528, 873, 1067
GsaI	CCCAGC	1 cut(s)	1073
GsuI	CTGGAG	2 cut(s)	288, 462
HaeIII	GGCC	3 cut(s)	216, 276, 315
HapII	CCGG	1 cut(s)	231
HgaI	GACGC	2 cut(s)	40, 1020
HhaI	GCGC	1 cut(s)	853
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	6 cut(s)	138, 157, 320, 708, 749, 977
Hin6I	GCGC	1 cut(s)	851
HinP1I	GCGC	1 cut(s)	851
HincII	GTYRAC	2 cut(s)	264, 763
HindII	GTYRAC	2 cut(s)	264, 763
HindIII	AAGCTT	1 cut(s)	142
HinfI	GANTC	6 cut(s)	130, 283, 323, 538, 611, 777
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	2 cut(s)	91, 606
Hpy166II	GTNNAC	2 cut(s)	264, 763
Hpy188I	TCNGA	7 cut(s)	44, 282, 378, 636, 643, 726, 809
Hpy188III	TCNNGA	3 cut(s)	231, 464, 827
Hpy8I	GTNNAC	2 cut(s)	264, 763
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	4 cut(s)	109, 266, 638, 960
HpyCH4III	ACNGT	2 cut(s)	721, 987
HpyCH4IV	ACGT	3 cut(s)	653, 691, 795
HpyCH4V	TGCA	9 cut(s)	71, 82, 320, 530, 681, 803, 875, 899, 983
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 869, 1072
HpySE526I	ACGT	3 cut(s)	653, 691, 795
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	6 cut(s)	138, 157, 320, 708, 749, 977
HspAI	GCGC	1 cut(s)	851
Kpn2I	TCCGGA	1 cut(s)	230
Ksp22I	TGATCA	2 cut(s)	186, 1026
Kzo9I	GATC	6 cut(s)	179, 186, 386, 494, 1026, 1039
LmnI	GCTCC	3 cut(s)	160, 233, 580
Lsp1109I	GCAGC	3 cut(s)	514, 859, 1078
MaeI	CTAG	3 cut(s)	962, 1076, 1087
MaeII	ACGT	3 cut(s)	653, 691, 795
MalI	GATC	6 cut(s)	181, 188, 388, 496, 1028, 1041
MboI	GATC	6 cut(s)	179, 186, 386, 494, 1026, 1039
MboII	GAAGA	7 cut(s)	56, 380, 391, 667, 739, 918, 1066
MflI	RGATCY	2 cut(s)	179, 1039
MhlI	GDGCHC	1 cut(s)	165
MlsI	TGGCCA	2 cut(s)	216, 315
MluCI	AATT	9 cut(s)	83, 359, 394, 447, 474, 509, 544, 592, 769
MluNI	TGGCCA	2 cut(s)	216, 315
MlyI	GAGTC	3 cut(s)	532, 605, 786
MmeI	TCCRAC	3 cut(s)	22, 391, 486
MnlI	CCTC	8 cut(s)	38, 113, 141, 175, 215, 342, 407, 410
Mox20I	TGGCCA	2 cut(s)	216, 315
MroI	TCCGGA	1 cut(s)	230
MroXI	GAANNNNTTC	1 cut(s)	720
MscI	TGGCCA	2 cut(s)	216, 315
MseI	TTAA	4 cut(s)	354, 543, 596, 884
MslI	CAYNNNNRTG	1 cut(s)	257
Msp20I	TGGCCA	2 cut(s)	216, 315
MspA1I	CMGCKG	1 cut(s)	1069
MspCI	CTTAAG	1 cut(s)	353
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	3 cut(s)	618, 1020, 1060
Mva1269I	GAATGC	1 cut(s)	1014
MvaI	CCWGG	3 cut(s)	618, 1020, 1060
MwoI	GCNNNNNNNGC	3 cut(s)	57, 869, 1072
NcoI	CCATGG	2 cut(s)	134, 153
NdeII	GATC	6 cut(s)	179, 186, 386, 494, 1026, 1039
NlaIII	CATG	6 cut(s)	138, 157, 320, 708, 749, 977
NlaIV	GGNNCC	1 cut(s)	162
OliI	CACNNNNGTG	1 cut(s)	257
PaqCI	CACCTGC	1 cut(s)	890
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PctI	GAATGC	1 cut(s)	1014
PdmI	GAANNNNTTC	1 cut(s)	720
PfeI	GAWTC	3 cut(s)	130, 283, 323
PfoI	TCCNGGA	1 cut(s)	1018
PkrI	GCNGC	4 cut(s)	50, 529, 874, 1068
PleI	GAGTC	3 cut(s)	532, 605, 785
PpsI	GAGTC	3 cut(s)	532, 605, 785
PpuMI	RGGWCCY	1 cut(s)	419
Psp1406I	AACGTT	1 cut(s)	653
Psp5II	RGGWCCY	1 cut(s)	419
Psp6I	CCWGG	3 cut(s)	616, 1018, 1058
PspFI	CCCAGC	1 cut(s)	1069
PspGI	CCWGG	3 cut(s)	616, 1018, 1058
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	3 cut(s)	150, 419, 518
PspPPI	RGGWCCY	1 cut(s)	419
PstI	CTGCAG	1 cut(s)	532
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	2 cut(s)	179, 1039
PvuII	CAGCTG	1 cut(s)	1069
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	4 cut(s)	354, 543, 596, 884
SatI	GCNGC	4 cut(s)	49, 528, 873, 1067
Sau3AI	GATC	6 cut(s)	179, 186, 386, 494, 1026, 1039
Sau96I	GGNCC	3 cut(s)	150, 419, 518
SchI	GAGTC	3 cut(s)	532, 605, 786
ScrFI	CCNGG	3 cut(s)	618, 1020, 1060
SduI	GDGCHC	1 cut(s)	165
SfcI	CTRYAG	1 cut(s)	528
SinI	GGWCC	3 cut(s)	150, 419, 518
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	145, 353
SmoI	CTYRAG	2 cut(s)	145, 353
Sse9I	AATT	9 cut(s)	83, 359, 394, 447, 474, 509, 544, 592, 769
SsiI	CCGC	2 cut(s)	15, 48
SspI	AATATT	2 cut(s)	122, 823
SspMI	CTAG	3 cut(s)	962, 1076, 1087
StyD4I	CCNGG	3 cut(s)	616, 1018, 1058
StyI	CCWWGG	2 cut(s)	134, 153
TaaI	ACNGT	2 cut(s)	721, 987
TaiI	ACGT	3 cut(s)	656, 694, 798
TasI	AATT	9 cut(s)	83, 359, 394, 447, 474, 509, 544, 592, 769
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	3 cut(s)	130, 283, 323
Tru1I	TTAA	4 cut(s)	354, 543, 596, 884
Tru9I	TTAA	4 cut(s)	354, 543, 596, 884
TscAI	CASTG	4 cut(s)	253, 259, 316, 613
TseI	GCWGC	3 cut(s)	527, 872, 1066
TspDTI	ATGAA	4 cut(s)	476, 502, 734, 945
TspRI	CASTG	4 cut(s)	253, 259, 316, 613
Vha464I	CTTAAG	1 cut(s)	353
VpaK11BI	GGWCC	3 cut(s)	150, 419, 518
XapI	RAATTY	3 cut(s)	359, 509, 769
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1066
XmnI	GAANNNNTTC	1 cut(s)	720
XspI	CTAG	3 cut(s)	962, 1076, 1087

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.