Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007414

Physical Location & Seq

Genomic Coordinates Reverse (-)

48924962 .. 48928504

Gene Structure 3543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00033780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGAGTTGGGTGGTGGAGAGAGAAAACGAGTGGTGGTGATCGGAGGCGGCGTTGCTGGCTCGCTTCTCGCAAAAAATCTGCAATTCAGCGCTGATTTCACCCTCATTGATCAGAAGGAATATTTTGAGATTCCATGGGCAAGCTTGAGGACCATGGTGGAGCCATCATTTGGGGAGAGATCTGTGATCAACCATAGAGATTACCTCACAAATGGCCAAATTATTACATCTGGAGCAATCAATATCACTGACACTGAAGTATTGACGGGAGAAGGCCGTCTAATTCCCTATGACTACCTTGTCATTGCCACTGGCCATGCAGATTCTGTTCCTAAAACCAAGACTGGGAGGCTTAAGGAATACCAAGAAGATAATCAGAAGATAAGATCAGCTAATTCCATTTTGATTGTTGGAGGAGGACCTACTGGTGTAGAGCTTGCTGGAGAAATTGCTACTGACTTCCCAGATAAGAAAATCACTCTGGTTCATACTGGTTCAAGGTTGTTGGAATTCATTGGACCAAAAGCTGCAAACAAGACTCTTAATTGGTTTCAGTCGAGGAATGTTGAAGTGATACTGGAGCAATCAGTCAGTTTAAACACAATCTCCGAGTCACCTGGAAGCAAAACATATCAGACTTCAGAAGGACAAACGTTTCACGCAGATTGTCATTTTCTATGCACAGGGAAACAGGTGGGTTCAGCTTGGCTCAAAGAAACAGTACTGAAGAGTAGCTTGGATGAATTTGGGAGATTAATAGTTGATGAGAATTTGAGAGTCAAGGGGAGAAAAAACGTCTTTGCAGTTGGAGACATTACTAATATTAAAGAAATCAAGCAAGGGTATTTGGCGCAAAAACAGGCTTTGGTGGCTGCAAAGAACATACAGCTCTTGCTTGCAGGAGGAAGACAGAGTAAGATGGCAACTTACGAAGCCCATTCGGTGCTGGCACTTGTTTCACTTGGAAGGAAACATGGGCTTGCACAGTTCCCATACACTACTTGGATTGGACGCCTTCCTGGACTGATCAAATCTAAAGATCTTTTTTGTGGGGAAGACAAGGAAGCAGCTGGGGCTACTGCCACAAGATTAATTTGGATTGTACGTGAGACATATAGACTCTTTGTTTTTCTTTTTTTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

381

Amino Acids

41.86

Weight (kDa)

8.9

Isoelectric Point (pI)

29.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	10 - 288	2e-36	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3	PF13738	97 - 270	6.4e-06	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox	PF00070	134 - 197	1.9e-07	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44190 AT3G44190 AT5G22140 AT5G22140
fragaria_vesca	FvH4_3g26670 FvH4_3g26670 FvH4_3g26670
malus_domestica	MD00G1071200.v1.1 MD02G1258500.v1.1
prunus_persica	Prupe.2G072100_v2.0.a1 Prupe.2G072100_v2.0.a1 Prupe.6G143400_v2.0.a1
pyrus_communis	pycom02g21970 pycom11g14620
rosa_chinensis	RchiOBHm_Chr5g0048121
rosa_laevigata	RLG00000034499
rosa_multiflora	Rmu_sc0001408.1_g000021
rosa_roxburghii	Rroxscaffold_1G00033780
rosa_rugosa	Rorug05G0236700 Rorug05G0236800
rosa_samantha	Rh5AG315900 Rh5BG326200 Rh5CG352700 Rh5DG337400
rosa_wichuraiana	Rw5G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	299
AccB7I	CCANNNNNTGG	1 cut(s)	170
AciI	CCGC	1 cut(s)	48
AclI	AACGTT	1 cut(s)	653
AcoI	YGGCCR	2 cut(s)	214, 313
AcsI	RAATTY	3 cut(s)	509, 743, 769
AcuI	CTGAAG	3 cut(s)	276, 624, 746
AcyI	GRCGYC	1 cut(s)	1012
AfaI	GTAC	2 cut(s)	723, 1104
AfeI	AGCGCT	1 cut(s)	91
AfiI	CCNNNNNNNGG	2 cut(s)	170, 345
AflII	CTTAAG	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	498, 569
AjnI	CCWGG	2 cut(s)	616, 1018
AjuI	GAANNNNNNNTTGG	2 cut(s)	719, 751
AluBI	AGCT	8 cut(s)	144, 392, 436, 527, 704, 735, 889, 1070
AluI	AGCT	8 cut(s)	144, 392, 436, 527, 704, 735, 889, 1070
Alw26I	GTCTC	2 cut(s)	804, 1103
AlwNI	CAGNNNCTG	1 cut(s)	326
Aor51HI	AGCGCT	1 cut(s)	91
AoxI	GGCC	3 cut(s)	214, 274, 313
ApeKI	GCWGC	3 cut(s)	527, 872, 1067
ApoI	RAATTY	3 cut(s)	509, 743, 769
AseI	ATTAAT	2 cut(s)	755, 1091
AspLEI	GCGC	2 cut(s)	92, 853
AspS9I	GGNCC	3 cut(s)	150, 419, 518
AsuHPI	GGTGA	3 cut(s)	49, 91, 606
AvaII	GGWCC	3 cut(s)	150, 419, 518
BalI	TGGCCA	2 cut(s)	216, 315
BbsI	GAAGAC	2 cut(s)	913, 1062
BbvI	GCAGC	3 cut(s)	514, 859, 1079
BccI	CCATC	2 cut(s)	172, 913
BceAI	ACGGC	1 cut(s)	261
BciT130I	CCWGG	2 cut(s)	618, 1020
BclI	TGATCA	3 cut(s)	109, 186, 1026
BcoDI	GTCTC	2 cut(s)	804, 1103
BfoI	RGCGCY	1 cut(s)	93
BfrI	CTTAAG	1 cut(s)	353
BglII	AGATCT	2 cut(s)	179, 1039
BisI	GCNGC	4 cut(s)	49, 528, 873, 1068
BlsI	GCNGC	4 cut(s)	50, 529, 874, 1069
BmcAI	AGTACT	1 cut(s)	723
Bme1390I	CCNGG	2 cut(s)	618, 1020
Bme18I	GGWCC	3 cut(s)	150, 419, 518
BmgT120I	GGNCC	3 cut(s)	150, 419, 518
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	2 cut(s)	618, 1020
BmrI	ACTGGG	1 cut(s)	354
BmuI	ACTGGG	1 cut(s)	354
BpiI	GAAGAC	2 cut(s)	913, 1062
BplI	GAGNNNNNCTC	2 cut(s)	189, 221
BpmI	CTGGAG	3 cut(s)	252, 462, 599
BpuEI	CTTGAG	1 cut(s)	166
BsaAI	YACGTR	1 cut(s)	1106
BsaHI	GRCGYC	1 cut(s)	1012
BsaJI	CCNNGG	2 cut(s)	134, 153
BsaXI	ACNNNNNCTCC	4 cut(s)	36, 66, 590, 620
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 345
Bse1I	ACTGG	5 cut(s)	316, 349, 430, 496, 582
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	2 cut(s)	618, 1020
BseDI	CCNNGG	2 cut(s)	134, 153
BseGI	GGATG	1 cut(s)	745
BseLI	CCNNNNNNNGG	2 cut(s)	170, 345
BseMI	GCAATG	1 cut(s)	303
BseNI	ACTGG	5 cut(s)	316, 349, 430, 496, 582
BseRI	GAGGAG	1 cut(s)	429
BseXI	GCAGC	3 cut(s)	514, 859, 1079
BseYI	CCCAGC	1 cut(s)	1070
BshFI	GGCC	3 cut(s)	216, 276, 315
BslI	CCNNNNNNNGG	2 cut(s)	170, 345
BsmAI	GTCTC	2 cut(s)	804, 1103
BsnI	GGCC	3 cut(s)	216, 276, 315
Bsp143I	GATC	7 cut(s)	39, 109, 179, 186, 386, 1026, 1039
Bsp19I	CCATGG	2 cut(s)	134, 153
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	3 cut(s)	216, 276, 315
BspLI	GGNNCC	1 cut(s)	162
BspTI	CTTAAG	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	303
BsrI	ACTGG	5 cut(s)	316, 349, 430, 496, 582
BssECI	CCNNGG	2 cut(s)	134, 153
BssMI	GATC	7 cut(s)	39, 109, 179, 186, 386, 1026, 1039
BssNI	GRCGYC	1 cut(s)	1012
BssT1I	CCWWGG	2 cut(s)	134, 153
Bst2UI	CCWGG	2 cut(s)	618, 1020
Bst4CI	ACNGT	2 cut(s)	721, 987
Bst6I	CTCTTC	1 cut(s)	722
BstACI	GRCGYC	1 cut(s)	1012
BstAFI	CTTAAG	1 cut(s)	353
BstBAI	YACGTR	1 cut(s)	1106
BstC8I	GCNNGC	7 cut(s)	58, 62, 142, 438, 897, 948, 981
BstDSI	CCRYGG	2 cut(s)	134, 153
BstF5I	GGATG	1 cut(s)	745
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	2 cut(s)	92, 853
BstKTI	GATC	7 cut(s)	42, 112, 182, 189, 389, 1029, 1042
BstMAI	GTCTC	2 cut(s)	804, 1103
BstMBI	GATC	7 cut(s)	39, 109, 179, 186, 386, 1026, 1039
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 869, 1073
BstNI	CCWGG	2 cut(s)	618, 1020
BstSCI	CCNGG	2 cut(s)	616, 1018
BstV1I	GCAGC	3 cut(s)	514, 859, 1079
BstV2I	GAAGAC	2 cut(s)	913, 1062
BstX2I	RGATCY	2 cut(s)	179, 1039
BstYI	RGATCY	2 cut(s)	179, 1039
BsuRI	GGCC	3 cut(s)	216, 276, 315
BtgI	CCRYGG	2 cut(s)	134, 153
BtsCI	GGATG	1 cut(s)	745
BtsIMutI	CAGTG	3 cut(s)	246, 252, 309
Cac8I	GCNNGC	7 cut(s)	58, 62, 142, 438, 897, 948, 981
CaiI	CAGNNNCTG	1 cut(s)	326
CfoI	GCGC	2 cut(s)	92, 853
Cfr13I	GGNCC	3 cut(s)	150, 419, 518
CseI	GACGC	1 cut(s)	1020
Csp6I	GTAC	2 cut(s)	722, 1103
CviAII	CATG	4 cut(s)	135, 154, 317, 974
CviQI	GTAC	2 cut(s)	722, 1103
DpnI	GATC	7 cut(s)	41, 111, 181, 188, 388, 1028, 1041
DpnII	GATC	7 cut(s)	39, 109, 179, 186, 386, 1026, 1039
DraI	TTTAAA	1 cut(s)	597
DrdI	GACNNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	299
EaeI	YGGCCR	2 cut(s)	214, 313
Eam1104I	CTCTTC	1 cut(s)	722
EarI	CTCTTC	1 cut(s)	722
Eco130I	CCWWGG	2 cut(s)	134, 153
Eco47I	GGWCC	3 cut(s)	150, 419, 518
Eco47III	AGCGCT	1 cut(s)	91
Eco57I	CTGAAG	3 cut(s)	276, 624, 746
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRI	GAATTC	1 cut(s)	509
EcoRII	CCWGG	2 cut(s)	616, 1018
EcoT14I	CCWWGG	2 cut(s)	134, 153
ErhI	CCWWGG	2 cut(s)	134, 153
FaeI	CATG	4 cut(s)	138, 157, 320, 977
FalI	AAGNNNNNCTT	2 cut(s)	719, 751
FatI	CATG	4 cut(s)	134, 153, 316, 973
FbaI	TGATCA	3 cut(s)	109, 186, 1026
Fnu4HI	GCNGC	4 cut(s)	49, 528, 873, 1068
FokI	GGATG	1 cut(s)	752
Fsp4HI	GCNGC	4 cut(s)	49, 528, 873, 1068
GlaI	GCGC	2 cut(s)	91, 852
GluI	GCNGC	4 cut(s)	49, 528, 873, 1068
GsaI	CCCAGC	1 cut(s)	1074
GsuI	CTGGAG	3 cut(s)	252, 462, 599
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	3 cut(s)	216, 276, 315
HgaI	GACGC	1 cut(s)	1020
HhaI	GCGC	2 cut(s)	92, 853
Hin1I	GRCGYC	1 cut(s)	1012
Hin1II	CATG	4 cut(s)	138, 157, 320, 977
Hin6I	GCGC	2 cut(s)	90, 851
HinP1I	GCGC	2 cut(s)	90, 851
HindIII	AAGCTT	1 cut(s)	142
HinfI	GANTC	6 cut(s)	130, 323, 538, 611, 777, 1119
HphI	GGTGA	3 cut(s)	49, 91, 606
Hpy188I	TCNGA	6 cut(s)	44, 114, 378, 610, 636, 643
Hpy188III	TCNNGA	1 cut(s)	231
HpyAV	CCTTC	5 cut(s)	109, 266, 638, 960, 1025
HpyCH4III	ACNGT	2 cut(s)	721, 987
HpyCH4IV	ACGT	3 cut(s)	653, 795, 1105
HpyCH4V	TGCA	8 cut(s)	82, 320, 530, 681, 803, 875, 899, 983
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 869, 1073
HpySE526I	ACGT	3 cut(s)	653, 795, 1105
Hsp92I	GRCGYC	1 cut(s)	1012
Hsp92II	CATG	4 cut(s)	138, 157, 320, 977
HspAI	GCGC	2 cut(s)	90, 851
Ksp22I	TGATCA	3 cut(s)	109, 186, 1026
Kzo9I	GATC	7 cut(s)	39, 109, 179, 186, 386, 1026, 1039
LmnI	GCTCC	3 cut(s)	160, 233, 580
Lsp1109I	GCAGC	3 cut(s)	514, 859, 1079
MaeII	ACGT	3 cut(s)	653, 795, 1105
MaeIII	GTNAC	1 cut(s)	612
MalI	GATC	7 cut(s)	41, 111, 181, 188, 388, 1028, 1041
MboI	GATC	7 cut(s)	39, 109, 179, 186, 386, 1026, 1039
MboII	GAAGA	5 cut(s)	380, 391, 739, 918, 1067
MflI	RGATCY	2 cut(s)	179, 1039
MlsI	TGGCCA	2 cut(s)	216, 315
MluNI	TGGCCA	2 cut(s)	216, 315
MlyI	GAGTC	4 cut(s)	532, 620, 786, 1113
MmeI	TCCRAC	3 cut(s)	391, 486, 787
MnlI	CCTC	9 cut(s)	38, 113, 141, 215, 342, 407, 410, 552, 896
Mox20I	TGGCCA	2 cut(s)	216, 315
MscI	TGGCCA	2 cut(s)	216, 315
MseI	TTAA	7 cut(s)	354, 543, 596, 755, 825, 1091, 1144
Msp20I	TGGCCA	2 cut(s)	216, 315
MspA1I	CMGCKG	1 cut(s)	1070
MspCI	CTTAAG	1 cut(s)	353
MspR9I	CCNGG	2 cut(s)	618, 1020
MssI	GTTTAAAC	1 cut(s)	597
MvaI	CCWGG	2 cut(s)	618, 1020
MwoI	GCNNNNNNNGC	3 cut(s)	57, 869, 1073
NcoI	CCATGG	2 cut(s)	134, 153
NdeII	GATC	7 cut(s)	39, 109, 179, 186, 386, 1026, 1039
NlaIII	CATG	4 cut(s)	138, 157, 320, 977
NlaIV	GGNNCC	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	612
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PfeI	GAWTC	2 cut(s)	130, 323
PflMI	CCANNNNNTGG	1 cut(s)	170
PfoI	TCCNGGA	1 cut(s)	1018
PkrI	GCNGC	4 cut(s)	50, 529, 874, 1069
PleI	GAGTC	4 cut(s)	532, 619, 785, 1113
PmeI	GTTTAAAC	1 cut(s)	597
PpsI	GAGTC	4 cut(s)	532, 619, 785, 1113
Ppu21I	YACGTR	1 cut(s)	1106
PpuMI	RGGWCCY	1 cut(s)	419
PshBI	ATTAAT	2 cut(s)	755, 1091
Psp1406I	AACGTT	1 cut(s)	653
Psp5II	RGGWCCY	1 cut(s)	419
Psp6I	CCWGG	2 cut(s)	616, 1018
PspFI	CCCAGC	1 cut(s)	1070
PspGI	CCWGG	2 cut(s)	616, 1018
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	3 cut(s)	150, 419, 518
PspPPI	RGGWCCY	1 cut(s)	419
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	2 cut(s)	179, 1039
PvuII	CAGCTG	1 cut(s)	1070
RsaI	GTAC	2 cut(s)	723, 1104
RsaNI	GTAC	2 cut(s)	722, 1103
SaqAI	TTAA	7 cut(s)	354, 543, 596, 755, 825, 1091, 1144
SatI	GCNGC	4 cut(s)	49, 528, 873, 1068
Sau3AI	GATC	7 cut(s)	39, 109, 179, 186, 386, 1026, 1039
Sau96I	GGNCC	3 cut(s)	150, 419, 518
ScaI	AGTACT	1 cut(s)	723
SchI	GAGTC	4 cut(s)	532, 620, 786, 1113
ScrFI	CCNGG	2 cut(s)	618, 1020
SinI	GGWCC	3 cut(s)	150, 419, 518
SmlI	CTYRAG	2 cut(s)	145, 353
SmoI	CTYRAG	2 cut(s)	145, 353
SsiI	CCGC	1 cut(s)	48
SspI	AATATT	2 cut(s)	122, 823
StyD4I	CCNGG	2 cut(s)	616, 1018
StyI	CCWWGG	2 cut(s)	134, 153
TaaI	ACNGT	2 cut(s)	721, 987
TaiI	ACGT	3 cut(s)	656, 798, 1108
TaqI	TCGA	1 cut(s)	557
TatI	WGTACW	1 cut(s)	721
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	2 cut(s)	130, 323
Tru1I	TTAA	7 cut(s)	354, 543, 596, 755, 825, 1091, 1144
Tru9I	TTAA	7 cut(s)	354, 543, 596, 755, 825, 1091, 1144
TscAI	CASTG	3 cut(s)	253, 259, 316
TseFI	GTSAC	1 cut(s)	612
TseI	GCWGC	3 cut(s)	527, 872, 1067
Tsp45I	GTSAC	1 cut(s)	612
TspDTI	ATGAA	3 cut(s)	476, 502, 756
TspRI	CASTG	3 cut(s)	253, 259, 316
Van91I	CCANNNNNTGG	1 cut(s)	170
Vha464I	CTTAAG	1 cut(s)	353
VpaK11BI	GGWCC	3 cut(s)	150, 419, 518
VspI	ATTAAT	2 cut(s)	755, 1091
XapI	RAATTY	3 cut(s)	509, 743, 769
XcmI	CCANNNNNNNNNTGG	1 cut(s)	999
ZrmI	AGTACT	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.