Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007414

Physical Location & Seq

Genomic Coordinates Reverse (-)

31168191 .. 31174917

Gene Structure 6727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1258500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGCTGCCGCGCAAGAGTCATCGGATGCGGAGATGAAAAGAGTGGTGGTGATTGGAGGCGGCGTCGGCGGCTCCGTCGTAGCCCATTCTCTCCAGTTCTGCGCTGATGTTGTCCTTGTTGATCAGAAGGAGTATTTTGAGATCCCATGGGGAAGCTTGAGGGCAATGGTGGAGCCATCATTTGCCAAAAGATCCATCATTAATCACTGCGATTACCTTCCAAATGTGCGGATTGTTGCATCTACTGCAGCTAACATCACAGACCGTGAAGTATTGACTACAGATGGCCGTTTGCTTGTATATGATTACCTTGTTATTGCCACTGGTCACAAGGACTCTGTTCCAAAAACCAGAGTTGCGAGGCTCAGTCAGTACCAGGCAGAGTTCGAAAAGATCAATTCTGCTGAATCAATCCTGATTGTTGGAGGGGGCCCTACTGGTGTTGAACTTGCTGGTGAAATTGCCATTGATTTTCCAGAAAAGAAGGTGACACTTGTGCACAGGGGGTCAAGGCTACTAGAATTCATTGGCTTGAAGGCTTCCCAAAAGGCACTTGATTGGTTAATATCAAAAAATGTTGAAGTTGTTTTGAATGAGTCCGTTAATTTGAACAATGTATCTGATGGTTTTATTCAAACATCTTCTGGAGAAGTTATCGCAGCTGATTGCCACTTTGTGTGCACGGCTAAACCAATGGGTTCGTCATGGCTTAGGGAGAGTATTTTACAGAATGACTTGGATATGCAAGGAAGATTGATGGTTGATAGAAACATGAGGGTTCGTGGTCATAAAAATATCTTTGCAGTAGGAGATATAACCGATGTTAAGGAGATCAAACAAGGATATTTAGCACAAAGACATGCTGAAGTGACTGCCGAGAACCTGAAGCTATTGTTGAGCGGACGAAATGAAAGCAAGATGGCTACATATAAGCCTGGTTTAGAAATGGCACTTGTTTCACTTGGGAGGAAAGAGGGAATTGCTCAGTTCCCATTAGTGACAATTAGTGGTTGCATCCCAGGCATGATCAAATCCGGGGACTTATTTGTAGGAAAGACAAGGAAACGTCTTGGGCTGAAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

362

Amino Acids

39.38

Weight (kDa)

8.18

Isoelectric Point (pI)

31.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	14 - 287	1.9e-32	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox	PF00070	138 - 202	1.4e-08	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44190 AT3G44190 AT5G22140 AT5G22140
fragaria_vesca	FvH4_3g26670 FvH4_3g26670 FvH4_3g26670
malus_domestica	MD00G1071200.v1.1 MD02G1258500.v1.1
prunus_persica	Prupe.2G072100_v2.0.a1 Prupe.2G072100_v2.0.a1 Prupe.6G143400_v2.0.a1
pyrus_communis	pycom02g21970 pycom11g14620
rosa_chinensis	RchiOBHm_Chr5g0048121
rosa_laevigata	RLG00000034499
rosa_multiflora	Rmu_sc0001408.1_g000021
rosa_roxburghii	Rroxscaffold_1G00033780
rosa_rugosa	Rorug05G0236700 Rorug05G0236800
rosa_samantha	Rh5AG315900 Rh5BG326200 Rh5CG352700 Rh5DG337400
rosa_wichuraiana	Rw5G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	900
AccII	CGCG	1 cut(s)	11
AciI	CCGC	6 cut(s)	9, 29, 60, 69, 229, 900
AclWI	GGATC	2 cut(s)	136, 186
AcoI	YGGCCR	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	521
AcuI	CTGAAG	2 cut(s)	885, 905
AcyI	GRCGYC	1 cut(s)	63
AdeI	CACNNNGTG	1 cut(s)	676
AfaI	GTAC	1 cut(s)	374
AgsI	TTSAA	6 cut(s)	446, 535, 581, 592, 610, 635
AjnI	CCWGG	3 cut(s)	375, 934, 1018
AluBI	AGCT	4 cut(s)	156, 251, 662, 889
AluI	AGCT	4 cut(s)	156, 251, 662, 889
Alw21I	GWGCWC	2 cut(s)	501, 683
Alw44I	GTGCAC	2 cut(s)	497, 679
AlwI	GGATC	2 cut(s)	136, 186
AoxI	GGCC	2 cut(s)	286, 430
ApaI	GGGCCC	1 cut(s)	434
ApaLI	GTGCAC	2 cut(s)	497, 679
ApeKI	GCWGC	3 cut(s)	5, 248, 659
ApoI	RAATTY	1 cut(s)	521
AseI	ATTAAT	1 cut(s)	201
AspLEI	GCGC	2 cut(s)	13, 104
AspS9I	GGNCC	2 cut(s)	430, 431
AsuC2I	CCSGG	1 cut(s)	1036
AsuHPI	GGTGA	3 cut(s)	61, 467, 499
AsuII	TTCGAA	1 cut(s)	387
BaeGI	GKGCMC	3 cut(s)	434, 501, 683
BanII	GRGCYC	1 cut(s)	434
Bbv12I	GWGCWC	2 cut(s)	501, 683
BbvI	GCAGC	2 cut(s)	260, 671
BccI	CCATC	6 cut(s)	184, 203, 278, 617, 751, 913
BceAI	ACGGC	2 cut(s)	273, 699
BciT130I	CCWGG	3 cut(s)	377, 936, 1020
BclI	TGATCA	2 cut(s)	121, 1026
BcnI	CCSGG	1 cut(s)	1036
BfaI	CTAG	1 cut(s)	518
BfmI	CTRYAG	2 cut(s)	246, 279
BisI	GCNGC	6 cut(s)	6, 9, 61, 70, 249, 660
BlsI	GCNGC	6 cut(s)	7, 10, 62, 71, 250, 661
Bme1390I	CCNGG	4 cut(s)	377, 936, 1020, 1036
BmgT120I	GGNCC	2 cut(s)	430, 431
BmiI	GGNNCC	4 cut(s)	73, 174, 431, 432
BmrFI	CCNGG	4 cut(s)	377, 936, 1020, 1036
BmsI	GCATC	3 cut(s)	16, 248, 1023
BpmI	CTGGAG	2 cut(s)	77, 666
Bpu10I	CCTNAGC	1 cut(s)	710
Bpu14I	TTCGAA	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	178
BpuMI	CCSGG	1 cut(s)	1036
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	3 cut(s)	146, 1018, 1035
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bse1I	ACTGG	3 cut(s)	94, 328, 442
Bse3DI	GCAATG	1 cut(s)	171
BseBI	CCWGG	3 cut(s)	377, 936, 1020
BseDI	CCNNGG	3 cut(s)	146, 1018, 1035
BseGI	GGATG	2 cut(s)	31, 1014
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	2 cut(s)	379, 998
BseNI	ACTGG	3 cut(s)	94, 328, 442
BseSI	GKGCMC	3 cut(s)	434, 501, 683
BseXI	GCAGC	2 cut(s)	260, 671
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	2 cut(s)	288, 432
BsiHKAI	GWGCWC	2 cut(s)	501, 683
BsiSI	CCGG	1 cut(s)	1035
BslFI	GGGAC	1 cut(s)	1052
BsmFI	GGGAC	1 cut(s)	1052
BsnI	GGCC	2 cut(s)	288, 432
Bsp119I	TTCGAA	1 cut(s)	387
Bsp120I	GGGCCC	1 cut(s)	430
Bsp1286I	GDGCHC	3 cut(s)	434, 501, 683
Bsp143I	GATC	6 cut(s)	121, 141, 191, 393, 831, 1026
Bsp19I	CCATGG	1 cut(s)	146
BspACI	CCGC	6 cut(s)	9, 29, 60, 69, 229, 900
BspANI	GGCC	2 cut(s)	288, 432
BspCNI	CTCAG	2 cut(s)	378, 997
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	4 cut(s)	73, 174, 431, 432
BspMAI	CTGCAG	1 cut(s)	250
BspPI	GGATC	2 cut(s)	136, 186
BspT104I	TTCGAA	1 cut(s)	387
BsrBI	CCGCTC	1 cut(s)	900
BsrDI	GCAATG	1 cut(s)	171
BsrI	ACTGG	3 cut(s)	94, 328, 442
BssECI	CCNNGG	3 cut(s)	146, 1018, 1035
BssMI	GATC	6 cut(s)	121, 141, 191, 393, 831, 1026
BssNI	GRCGYC	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	146
Bst2UI	CCWGG	3 cut(s)	377, 936, 1020
Bst4CI	ACNGT	1 cut(s)	266
BstACI	GRCGYC	1 cut(s)	63
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstBI	TTCGAA	1 cut(s)	387
BstDEI	CTNAG	3 cut(s)	365, 710, 984
BstDSI	CCRYGG	1 cut(s)	146
BstF5I	GGATG	2 cut(s)	31, 1014
BstFNI	CGCG	1 cut(s)	11
BstHHI	GCGC	2 cut(s)	13, 104
BstKTI	GATC	6 cut(s)	124, 144, 194, 396, 834, 1029
BstMBI	GATC	6 cut(s)	121, 141, 191, 393, 831, 1026
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 69, 245, 1020
BstNI	CCWGG	3 cut(s)	377, 936, 1020
BstNSI	RCATGY	1 cut(s)	863
BstSCI	CCNGG	4 cut(s)	375, 934, 1018, 1034
BstSFI	CTRYAG	2 cut(s)	246, 279
BstSLI	GKGCMC	3 cut(s)	434, 501, 683
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	2 cut(s)	260, 671
BstX2I	RGATCY	2 cut(s)	141, 191
BstYI	RGATCY	2 cut(s)	141, 191
BsuRI	GGCC	2 cut(s)	288, 432
BtgI	CCRYGG	1 cut(s)	146
BtsCI	GGATG	2 cut(s)	31, 1014
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	2 cut(s)	205, 321
CfoI	GCGC	2 cut(s)	13, 104
Cfr13I	GGNCC	2 cut(s)	430, 431
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	5 cut(s)	147, 705, 772, 860, 1024
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	3 cut(s)	365, 710, 984
DpnI	GATC	6 cut(s)	123, 143, 193, 395, 833, 1028
DpnII	GATC	6 cut(s)	121, 141, 191, 393, 831, 1026
DraIII	CACNNNGTG	1 cut(s)	676
EaeI	YGGCCR	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	434
Eco57I	CTGAAG	2 cut(s)	885, 905
EcoO109I	RGGNCCY	2 cut(s)	430, 431
EcoRI	GAATTC	1 cut(s)	521
EcoRII	CCWGG	3 cut(s)	375, 934, 1018
EcoT14I	CCWWGG	1 cut(s)	146
EcoT38I	GRGCYC	1 cut(s)	434
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	5 cut(s)	150, 708, 775, 863, 1027
FaqI	GGGAC	1 cut(s)	1052
FatI	CATG	5 cut(s)	146, 704, 771, 859, 1023
FbaI	TGATCA	2 cut(s)	121, 1026
Fnu4HI	GCNGC	6 cut(s)	6, 9, 61, 70, 249, 660
FokI	GGATG	2 cut(s)	38, 1001
FriOI	GRGCYC	1 cut(s)	434
Fsp4HI	GCNGC	6 cut(s)	6, 9, 61, 70, 249, 660
FspBI	CTAG	1 cut(s)	518
GlaI	GCGC	2 cut(s)	12, 103
GluI	GCNGC	6 cut(s)	6, 9, 61, 70, 249, 660
GsuI	CTGGAG	2 cut(s)	77, 666
HaeIII	GGCC	2 cut(s)	288, 432
HapII	CCGG	1 cut(s)	1035
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	2 cut(s)	13, 104
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	5 cut(s)	150, 708, 775, 863, 1027
Hin6I	GCGC	2 cut(s)	11, 102
HinP1I	GCGC	2 cut(s)	11, 102
HindIII	AAGCTT	1 cut(s)	154
HinfI	GANTC	4 cut(s)	17, 335, 407, 596
HpaII	CCGG	1 cut(s)	1035
HphI	GGTGA	3 cut(s)	61, 467, 499
Hpy166II	GTNNAC	2 cut(s)	499, 681
Hpy188I	TCNGA	3 cut(s)	25, 126, 622
Hpy188III	TCNNGA	3 cut(s)	415, 476, 645
Hpy8I	GTNNAC	2 cut(s)	499, 681
Hpy99I	CGWCG	2 cut(s)	68, 80
HpyAV	CCTTC	4 cut(s)	121, 227, 478, 529
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	1066
HpyCH4V	TGCA	7 cut(s)	239, 248, 499, 681, 745, 803, 1014
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 69, 245, 1020
HpyF3I	CTNAG	3 cut(s)	365, 710, 984
HpySE526I	ACGT	1 cut(s)	1066
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	5 cut(s)	150, 708, 775, 863, 1027
HspAI	GCGC	2 cut(s)	11, 102
Ksp22I	TGATCA	2 cut(s)	121, 1026
Kzo9I	GATC	6 cut(s)	121, 141, 191, 393, 831, 1026
LmnI	GCTCC	2 cut(s)	77, 172
Lsp1109I	GCAGC	2 cut(s)	260, 671
LweI	GCATC	3 cut(s)	16, 248, 1023
MaeI	CTAG	1 cut(s)	518
MaeII	ACGT	1 cut(s)	1066
MaeIII	GTNAC	4 cut(s)	326, 487, 868, 997
MalI	GATC	6 cut(s)	123, 143, 193, 395, 833, 1028
MbiI	CCGCTC	1 cut(s)	900
MboI	GATC	6 cut(s)	121, 141, 191, 393, 831, 1026
MboII	GAAGA	2 cut(s)	633, 762
MflI	RGATCY	2 cut(s)	141, 191
MhlI	GDGCHC	3 cut(s)	434, 501, 683
MluCI	AATT	6 cut(s)	397, 459, 521, 604, 978, 1002
MlyI	GAGTC	3 cut(s)	26, 329, 605
MmeI	TCCRAC	1 cut(s)	403
MnlI	CCTC	7 cut(s)	50, 153, 354, 419, 768, 960, 967
MseI	TTAA	4 cut(s)	201, 563, 603, 825
MspA1I	CMGCKG	1 cut(s)	662
MspI	CCGG	1 cut(s)	1035
MspR9I	CCNGG	4 cut(s)	377, 936, 1020, 1036
MvaI	CCWGG	3 cut(s)	377, 936, 1020
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	4 cut(s)	66, 69, 245, 1020
NciI	CCSGG	1 cut(s)	1036
NcoI	CCATGG	1 cut(s)	146
NdeII	GATC	6 cut(s)	121, 141, 191, 393, 831, 1026
NlaIII	CATG	5 cut(s)	150, 708, 775, 863, 1027
NlaIV	GGNNCC	4 cut(s)	73, 174, 431, 432
NmeAIII	GCCGAG	1 cut(s)	901
NmuCI	GTSAC	4 cut(s)	326, 487, 868, 997
NspI	RCATGY	1 cut(s)	863
NspV	TTCGAA	1 cut(s)	387
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	407
PkrI	GCNGC	6 cut(s)	7, 10, 62, 71, 250, 661
PleI	GAGTC	3 cut(s)	25, 329, 604
PpsI	GAGTC	3 cut(s)	25, 329, 604
PshBI	ATTAAT	1 cut(s)	201
Psp6I	CCWGG	3 cut(s)	375, 934, 1018
PspGI	CCWGG	3 cut(s)	375, 934, 1018
PspN4I	GGNNCC	4 cut(s)	73, 174, 431, 432
PspOMI	GGGCCC	1 cut(s)	430
PspPI	GGNCC	2 cut(s)	430, 431
PstI	CTGCAG	1 cut(s)	250
PsuI	RGATCY	2 cut(s)	141, 191
PvuII	CAGCTG	1 cut(s)	662
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
SaqAI	TTAA	4 cut(s)	201, 563, 603, 825
SatI	GCNGC	6 cut(s)	6, 9, 61, 70, 249, 660
Sau3AI	GATC	6 cut(s)	121, 141, 191, 393, 831, 1026
Sau96I	GGNCC	2 cut(s)	430, 431
SchI	GAGTC	3 cut(s)	26, 329, 605
ScrFI	CCNGG	4 cut(s)	377, 936, 1020, 1036
SduI	GDGCHC	3 cut(s)	434, 501, 683
SfaNI	GCATC	3 cut(s)	16, 248, 1023
SfcI	CTRYAG	2 cut(s)	246, 279
SfuI	TTCGAA	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	157
SmoI	CTYRAG	1 cut(s)	157
Sse9I	AATT	6 cut(s)	397, 459, 521, 604, 978, 1002
SsiI	CCGC	6 cut(s)	9, 29, 60, 69, 229, 900
SspMI	CTAG	1 cut(s)	518
StyD4I	CCNGG	4 cut(s)	375, 934, 1018, 1034
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	1 cut(s)	1069
TaqI	TCGA	1 cut(s)	387
TasI	AATT	6 cut(s)	397, 459, 521, 604, 978, 1002
TauI	GCSGC	3 cut(s)	11, 63, 72
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	4 cut(s)	201, 563, 603, 825
Tru9I	TTAA	4 cut(s)	201, 563, 603, 825
TscAI	CASTG	2 cut(s)	212, 328
TseFI	GTSAC	4 cut(s)	326, 487, 868, 997
TseI	GCWGC	3 cut(s)	5, 248, 659
Tsp45I	GTSAC	4 cut(s)	326, 487, 868, 997
TspDTI	ATGAA	3 cut(s)	50, 514, 924
TspGWI	ACGGA	2 cut(s)	64, 589
TspRI	CASTG	2 cut(s)	212, 328
VneI	GTGCAC	2 cut(s)	497, 679
VspI	ATTAAT	1 cut(s)	201
XapI	RAATTY	1 cut(s)	521
XceI	RCATGY	1 cut(s)	863
XspI	CTAG	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.