Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007414

Physical Location & Seq

Genomic Coordinates Forward (+)

45347726 .. 45351267

Gene Structure 3542 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG337400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGTGGAGCCATCATTTGGGGAGAGATCTGTGATCAACCATAGAGATTACCTCACAAATGGCCAAATTATTACATCTGGAGCAATCAATATCACTGACACTGAAGTATTGACGGGAGAAGGCCGTCTAATTCCCTATGACTACCTTGTCATTGCCACTGGCCATGCAGATTCTGTTCCTAAAAATAAGACTGGGAGGCTTAAGGAATACCAAGAAGATTATCAGAAGATAAGATCAGCTAATTCCATTTTGATTGTTGGAGGAGGACCTACTGGTGTAGAGCTTGCTGGAGAAATTGCTACTGACTTCCCAGATAAGAAAATCACTCTGGTTCATACTGGTTCAAGGTTGTTGGAATTTATTGGACCAAAAGCTGCAAACAAGACTCTTAATTGGTTGCAGTCAAGGAATGTTGAAGTGATACTGGAGCAATCAGTCAGTTTAAACACAATCTCCGAGTCACCTGGAAGCAAAACATATCAGACTTCAGAAGGACAAACGTTTCATGCAGATTGTCATTTTCTATGCACAGGGAAACGTGTGGGTTCAGCTTGGCTCAAAGAAACAGTTTTGAAGAGTAGCTTGGATGAATTTGGGAGATTAATAGTTGATGAGAATTTGAGAGTCAAAGGGAGAAAAAACATCTTTGCAGTTGGAGACATTACTAATATTAAAGAAATTAAGCAAGGGTATTTGGCACAAAAACAGGCTTTGGTGGCTGCAAAGAACATAAAGCTCTTGCTTGCAGGAGGAAGAGAGAGTAAAATGGCAACTTACGAAGCTCATTCGGTGCTAGCACTTGTTTCACTTGGAAGGAAACATGGCCTTGCACAGTTCCCATACACTACTTGTATTGGACGCCTTCCTGGACTGATCAAATCTAAAGATCTTTTTGTGGGGAAGACAAGGAAGCAGCTGGGGCTACTGCCGCAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

312

Amino Acids

34.16

Weight (kDa)

9.24

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	24 - 237	3.6e-32	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3	PF13738	47 - 219	2.6e-06	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox	PF00070	83 - 146	9.4e-08	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44190 AT3G44190 AT5G22140 AT5G22140
fragaria_vesca	FvH4_3g26670 FvH4_3g26670 FvH4_3g26670
malus_domestica	MD00G1071200.v1.1 MD02G1258500.v1.1
prunus_persica	Prupe.2G072100_v2.0.a1 Prupe.2G072100_v2.0.a1 Prupe.6G143400_v2.0.a1
pyrus_communis	pycom02g21970 pycom11g14620
rosa_chinensis	RchiOBHm_Chr5g0048121
rosa_laevigata	RLG00000034499
rosa_multiflora	Rmu_sc0001408.1_g000021
rosa_roxburghii	Rroxscaffold_1G00033780
rosa_rugosa	Rorug05G0236700 Rorug05G0236800
rosa_samantha	Rh5AG315900 Rh5BG326200 Rh5CG352700 Rh5DG337400
rosa_wichuraiana	Rw5G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
AccB7I	CCANNNNNTGG	1 cut(s)	17
AciI	CCGC	1 cut(s)	929
AclI	AACGTT	1 cut(s)	500
AcoI	YGGCCR	2 cut(s)	61, 160
AcsI	RAATTY	3 cut(s)	356, 590, 616
AcuI	CTGAAG	2 cut(s)	123, 471
AcyI	GRCGYC	1 cut(s)	859
AfiI	CCNNNNNNNGG	1 cut(s)	17
AflII	CTTAAG	1 cut(s)	200
AflIII	ACRYGT	1 cut(s)	538
AgsI	TTSAA	3 cut(s)	345, 416, 574
AjnI	CCWGG	2 cut(s)	463, 865
AjuI	GAANNNNNNNTTGG	2 cut(s)	566, 598
AluBI	AGCT	8 cut(s)	239, 283, 374, 551, 582, 736, 782, 916
AluI	AGCT	8 cut(s)	239, 283, 374, 551, 582, 736, 782, 916
Alw26I	GTCTC	1 cut(s)	651
AlwNI	CAGNNNCTG	1 cut(s)	173
AoxI	GGCC	4 cut(s)	61, 121, 160, 823
ApeKI	GCWGC	3 cut(s)	374, 719, 913
ApoI	RAATTY	3 cut(s)	356, 590, 616
AseI	ATTAAT	1 cut(s)	602
AspS9I	GGNCC	2 cut(s)	266, 365
AsuHPI	GGTGA	1 cut(s)	453
AsuNHI	GCTAGC	1 cut(s)	793
AvaII	GGWCC	2 cut(s)	266, 365
BalI	TGGCCA	2 cut(s)	63, 162
BbsI	GAAGAC	1 cut(s)	908
BbvI	GCAGC	3 cut(s)	361, 706, 925
BccI	CCATC	1 cut(s)	19
BceAI	ACGGC	1 cut(s)	108
BciT130I	CCWGG	2 cut(s)	465, 867
BclI	TGATCA	2 cut(s)	33, 873
BcoDI	GTCTC	1 cut(s)	651
BfaI	CTAG	1 cut(s)	794
BfrI	CTTAAG	1 cut(s)	200
BglII	AGATCT	2 cut(s)	26, 886
BisI	GCNGC	4 cut(s)	375, 720, 914, 929
BlsI	GCNGC	4 cut(s)	376, 721, 915, 930
Bme1390I	CCNGG	2 cut(s)	465, 867
Bme18I	GGWCC	2 cut(s)	266, 365
BmgT120I	GGNCC	2 cut(s)	266, 365
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	2 cut(s)	465, 867
BmrI	ACTGGG	1 cut(s)	201
BmtI	GCTAGC	1 cut(s)	797
BmuI	ACTGGG	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	908
BplI	GAGNNNNNCTC	2 cut(s)	36, 68
BpmI	CTGGAG	3 cut(s)	99, 309, 446
BsaHI	GRCGYC	1 cut(s)	859
BsaXI	ACNNNNNCTCC	2 cut(s)	437, 467
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse1I	ACTGG	5 cut(s)	163, 196, 277, 343, 429
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	2 cut(s)	465, 867
BseGI	GGATG	1 cut(s)	592
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMI	GCAATG	1 cut(s)	150
BseNI	ACTGG	5 cut(s)	163, 196, 277, 343, 429
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	3 cut(s)	361, 706, 925
BseYI	CCCAGC	1 cut(s)	916
BshFI	GGCC	4 cut(s)	63, 123, 162, 825
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	651
BsnI	GGCC	4 cut(s)	63, 123, 162, 825
Bsp143I	GATC	5 cut(s)	26, 33, 233, 873, 886
BspACI	CCGC	1 cut(s)	929
BspANI	GGCC	4 cut(s)	63, 123, 162, 825
BspLI	GGNNCC	1 cut(s)	9
BspOI	GCTAGC	1 cut(s)	797
BspTI	CTTAAG	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	150
BsrI	ACTGG	5 cut(s)	163, 196, 277, 343, 429
BssMI	GATC	5 cut(s)	26, 33, 233, 873, 886
BssNI	GRCGYC	1 cut(s)	859
Bst2UI	CCWGG	2 cut(s)	465, 867
Bst4CI	ACNGT	2 cut(s)	568, 834
Bst6I	CTCTTC	2 cut(s)	569, 748
BstACI	GRCGYC	1 cut(s)	859
BstAFI	CTTAAG	1 cut(s)	200
BstC8I	GCNNGC	3 cut(s)	285, 744, 795
BstF5I	GGATG	1 cut(s)	592
BstKTI	GATC	5 cut(s)	29, 36, 236, 876, 889
BstMAI	GTCTC	1 cut(s)	651
BstMBI	GATC	5 cut(s)	26, 33, 233, 873, 886
BstMWI	GCNNNNNNNGC	3 cut(s)	716, 919, 928
BstNI	CCWGG	2 cut(s)	465, 867
BstSCI	CCNGG	2 cut(s)	463, 865
BstV1I	GCAGC	3 cut(s)	361, 706, 925
BstV2I	GAAGAC	1 cut(s)	908
BstX2I	RGATCY	2 cut(s)	26, 886
BstYI	RGATCY	2 cut(s)	26, 886
BsuRI	GGCC	4 cut(s)	63, 123, 162, 825
BtsCI	GGATG	1 cut(s)	592
BtsIMutI	CAGTG	3 cut(s)	93, 99, 156
Cac8I	GCNNGC	3 cut(s)	285, 744, 795
CaiI	CAGNNNCTG	1 cut(s)	173
Cfr13I	GGNCC	2 cut(s)	266, 365
CseI	GACGC	1 cut(s)	867
CviAII	CATG	3 cut(s)	164, 506, 821
DpnI	GATC	5 cut(s)	28, 35, 235, 875, 888
DpnII	GATC	5 cut(s)	26, 33, 233, 873, 886
DraI	TTTAAA	1 cut(s)	444
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
EaeI	YGGCCR	2 cut(s)	61, 160
Eam1104I	CTCTTC	2 cut(s)	569, 748
EarI	CTCTTC	2 cut(s)	569, 748
Eco47I	GGWCC	2 cut(s)	266, 365
Eco57I	CTGAAG	2 cut(s)	123, 471
EcoO109I	RGGNCCY	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	463, 865
FaeI	CATG	3 cut(s)	167, 509, 824
FalI	AAGNNNNNCTT	2 cut(s)	566, 598
FatI	CATG	3 cut(s)	163, 505, 820
FbaI	TGATCA	2 cut(s)	33, 873
Fnu4HI	GCNGC	4 cut(s)	375, 720, 914, 929
FokI	GGATG	1 cut(s)	599
Fsp4HI	GCNGC	4 cut(s)	375, 720, 914, 929
FspBI	CTAG	1 cut(s)	794
GluI	GCNGC	4 cut(s)	375, 720, 914, 929
GsaI	CCCAGC	1 cut(s)	920
GsuI	CTGGAG	3 cut(s)	99, 309, 446
HaeIII	GGCC	4 cut(s)	63, 123, 162, 825
HgaI	GACGC	1 cut(s)	867
Hin1I	GRCGYC	1 cut(s)	859
Hin1II	CATG	3 cut(s)	167, 509, 824
HinfI	GANTC	4 cut(s)	170, 385, 458, 624
HphI	GGTGA	1 cut(s)	453
Hpy188I	TCNGA	4 cut(s)	225, 457, 483, 490
Hpy188III	TCNNGA	1 cut(s)	78
HpyAV	CCTTC	4 cut(s)	113, 485, 807, 872
HpyCH4III	ACNGT	2 cut(s)	568, 834
HpyCH4IV	ACGT	2 cut(s)	500, 538
HpyCH4V	TGCA	9 cut(s)	167, 377, 400, 509, 528, 650, 722, 746, 830
HpyF10VI	GCNNNNNNNGC	3 cut(s)	716, 919, 928
HpySE526I	ACGT	2 cut(s)	500, 538
Hsp92I	GRCGYC	1 cut(s)	859
Hsp92II	CATG	3 cut(s)	167, 509, 824
Ksp22I	TGATCA	2 cut(s)	33, 873
Kzo9I	GATC	5 cut(s)	26, 33, 233, 873, 886
LmnI	GCTCC	3 cut(s)	7, 80, 427
Lsp1109I	GCAGC	3 cut(s)	361, 706, 925
MaeI	CTAG	1 cut(s)	794
MaeII	ACGT	2 cut(s)	500, 538
MaeIII	GTNAC	1 cut(s)	459
MalI	GATC	5 cut(s)	28, 35, 235, 875, 888
MboI	GATC	5 cut(s)	26, 33, 233, 873, 886
MboII	GAAGA	5 cut(s)	227, 238, 586, 765, 913
MflI	RGATCY	2 cut(s)	26, 886
MlsI	TGGCCA	2 cut(s)	63, 162
MluCI	AATT	9 cut(s)	66, 129, 241, 294, 356, 391, 590, 616, 678
MluNI	TGGCCA	2 cut(s)	63, 162
MlyI	GAGTC	3 cut(s)	379, 467, 633
MmeI	TCCRAC	3 cut(s)	238, 333, 634
MnlI	CCTC	5 cut(s)	62, 189, 254, 257, 743
Mox20I	TGGCCA	2 cut(s)	63, 162
MscI	TGGCCA	2 cut(s)	63, 162
MseI	TTAA	7 cut(s)	201, 390, 443, 602, 672, 681, 937
Msp20I	TGGCCA	2 cut(s)	63, 162
MspA1I	CMGCKG	1 cut(s)	916
MspCI	CTTAAG	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	465, 867
MssI	GTTTAAAC	1 cut(s)	444
MvaI	CCWGG	2 cut(s)	465, 867
MwoI	GCNNNNNNNGC	3 cut(s)	716, 919, 928
NdeII	GATC	5 cut(s)	26, 33, 233, 873, 886
NheI	GCTAGC	1 cut(s)	793
NlaIII	CATG	3 cut(s)	167, 509, 824
NlaIV	GGNNCC	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	459
PfeI	GAWTC	1 cut(s)	170
PflMI	CCANNNNNTGG	1 cut(s)	17
PfoI	TCCNGGA	1 cut(s)	865
PkrI	GCNGC	4 cut(s)	376, 721, 915, 930
PleI	GAGTC	3 cut(s)	379, 466, 632
PmeI	GTTTAAAC	1 cut(s)	444
PpsI	GAGTC	3 cut(s)	379, 466, 632
PpuMI	RGGWCCY	1 cut(s)	266
PshBI	ATTAAT	1 cut(s)	602
Psp1406I	AACGTT	1 cut(s)	500
Psp5II	RGGWCCY	1 cut(s)	266
Psp6I	CCWGG	2 cut(s)	463, 865
PspFI	CCCAGC	1 cut(s)	916
PspGI	CCWGG	2 cut(s)	463, 865
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	2 cut(s)	266, 365
PspPPI	RGGWCCY	1 cut(s)	266
PstNI	CAGNNNCTG	1 cut(s)	173
PsuI	RGATCY	2 cut(s)	26, 886
PvuII	CAGCTG	1 cut(s)	916
SaqAI	TTAA	7 cut(s)	201, 390, 443, 602, 672, 681, 937
SatI	GCNGC	4 cut(s)	375, 720, 914, 929
Sau3AI	GATC	5 cut(s)	26, 33, 233, 873, 886
Sau96I	GGNCC	2 cut(s)	266, 365
SchI	GAGTC	3 cut(s)	379, 467, 633
ScrFI	CCNGG	2 cut(s)	465, 867
SinI	GGWCC	2 cut(s)	266, 365
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	9 cut(s)	66, 129, 241, 294, 356, 391, 590, 616, 678
SsiI	CCGC	1 cut(s)	929
SspI	AATATT	1 cut(s)	670
SspMI	CTAG	1 cut(s)	794
StyD4I	CCNGG	2 cut(s)	463, 865
TaaI	ACNGT	2 cut(s)	568, 834
TaiI	ACGT	2 cut(s)	503, 541
TasI	AATT	9 cut(s)	66, 129, 241, 294, 356, 391, 590, 616, 678
TauI	GCSGC	1 cut(s)	931
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	7 cut(s)	201, 390, 443, 602, 672, 681, 937
Tru9I	TTAA	7 cut(s)	201, 390, 443, 602, 672, 681, 937
TscAI	CASTG	3 cut(s)	100, 106, 163
TseFI	GTSAC	1 cut(s)	459
TseI	GCWGC	3 cut(s)	374, 719, 913
Tsp45I	GTSAC	1 cut(s)	459
TspDTI	ATGAA	3 cut(s)	323, 494, 603
TspRI	CASTG	3 cut(s)	100, 106, 163
Van91I	CCANNNNNTGG	1 cut(s)	17
Vha464I	CTTAAG	1 cut(s)	200
VpaK11BI	GGWCC	2 cut(s)	266, 365
VspI	ATTAAT	1 cut(s)	602
XapI	RAATTY	3 cut(s)	356, 590, 616
XspI	CTAG	1 cut(s)	794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.