Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014507

Physical Location & Seq

Genomic Coordinates Reverse (-)

7729171 .. 7731200

Gene Structure 2030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTCCTCGTCTCTTCTTCTCTCCGGTTCTACTGTATCTTCTTCGTTTATCGCTCCATCTAAGCCTTCTCTCGTACGAAATTCCAGTAAGACATCACTGTTACCATTTCGTAATGTTTCGAGAAGCTTCAAAACCGTCAAGTGCACCGTTGATTCTTCATATGGAGGCAATGTTCCCACGTTCCCTCGGACGAGAGTTTGGGACCCGTACAAACGTCTAGGAGTTAGTCCATATGCTTCCGAGGAAGAAATCTGGGCCTCTCGTAACTTTCTTTTACAGCAGTACGCTGGACATGAAAGAAGCGAAGAGTCTATAGAAGGAGCCTTTGAGAAGCTTCTCATGTCTAGTTTTATCAGAAGGAAGAAGACTAAAATCAATCTTAAATCAAAGTTGAAGAAGAAAGTTGAGGAATCTCCTCCGTGGCTCAAAGCTCTTCTCGATTTCGTTGAAATGCCTCCCATGGACACTATTTTCAGAAGACTTTTCCTCTTTGCCTTCATGGGTGGTTGGAGTATCATGAACTCTGCAGAAGGCGGTCCTGCGTTTCAGGTGGCGGTATCATTGGCTGCGTGCGTATATTTTCTGAATGAGAAGACAAAGAGCTTGGGGAGAGCTTGCTTAATCGGAATTGGAGCTTTAGTTGCCGGGTGGTTCTGCGGTTCGTTAATCATTCCCATGATTCCGACGTTTCTCATTCAGCCTACATGGACACTCGAGCTCCTAACATCACTGGTCGCTTATGTGTTTTTGTTTCTTTCTTGTACTTTCCTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006457 GO:0006996 GO:0007275 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009639 GO:0009640 GO:0009657 GO:0009658 GO:0009704 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033157 GO:0034357 GO:0034762 GO:0034764 GO:0042170 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048518 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0055035 GO:0060341 GO:0061077 GO:0061458 GO:0065007 GO:0070201 GO:0071840 GO:0090087 GO:0090316 GO:1903533 GO:1903827 GO:1903829 GO:1904215 GO:1904216 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CPP1-like

Protein Analysis

258

Amino Acids

28.82

Weight (kDa)

9.68

Isoelectric Point (pI)

59.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPP1-like	PF11833	79 - 257	1.3e-58	Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23040 AT5G23040
fragaria_vesca	FvH4_5g12961
malus_domestica	MD06G1208500.v1.1 MD14G1218800.v1.1
prunus_persica	Prupe.5G213000_v2.0.a1
pyrus_communis	pycom06g18630
rosa_chinensis	RchiOBHm_Chr7g0184201
rosa_laevigata	RLG00000004994
rosa_multiflora	Rmu_co8396789.1_g000001 Rmu_sc0012221.1_g000008
rosa_rugosa	Rorug06G0463800
rosa_samantha	Rh7AG082000 Rh7BG065200 Rh7CG065600 Rh7DG065300
rosa_wichuraiana	Rw7G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	534, 554, 657
AcsI	RAATTY	1 cut(s)	79
AfaI	GTAC	4 cut(s)	75, 209, 284, 763
AgsI	TTSAA	3 cut(s)	130, 394, 449
AloI	GAACNNNNNNTCC	2 cut(s)	156, 188
AluBI	AGCT	7 cut(s)	126, 334, 431, 603, 614, 635, 718
AluI	AGCT	7 cut(s)	126, 334, 431, 603, 614, 635, 718
Alw21I	GWGCWC	2 cut(s)	146, 720
Alw26I	GTCTC	1 cut(s)	15
Alw44I	GTGCAC	1 cut(s)	142
Ama87I	CYCGRG	1 cut(s)	713
AoxI	GGCC	1 cut(s)	255
ApaLI	GTGCAC	1 cut(s)	142
ApeKI	GCWGC	1 cut(s)	566
ApoI	RAATTY	1 cut(s)	79
AspS9I	GGNCC	3 cut(s)	202, 255, 536
AsuC2I	CCSGG	1 cut(s)	646
AvaI	CYCGRG	1 cut(s)	713
AvaII	GGWCC	2 cut(s)	202, 536
BaeGI	GKGCMC	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	720
BbsI	GAAGAC	3 cut(s)	371, 484, 599
Bbv12I	GWGCWC	2 cut(s)	146, 720
BbvI	GCAGC	1 cut(s)	553
BccI	CCATC	1 cut(s)	64
BcnI	CCSGG	1 cut(s)	646
BcoDI	GTCTC	1 cut(s)	15
BfaI	CTAG	2 cut(s)	218, 345
BfmI	CTRYAG	2 cut(s)	312, 525
BisI	GCNGC	1 cut(s)	567
BlsI	GCNGC	1 cut(s)	568
Bme1390I	CCNGG	1 cut(s)	646
Bme18I	GGWCC	2 cut(s)	202, 536
BmeT110I	CYCGRG	1 cut(s)	713
BmgT120I	GGNCC	3 cut(s)	202, 255, 536
BmiI	GGNNCC	3 cut(s)	203, 204, 322
BmrFI	CCNGG	1 cut(s)	646
BpiI	GAAGAC	3 cut(s)	371, 484, 599
BpuEI	CTTGAG	1 cut(s)	755
BpuMI	CCSGG	1 cut(s)	646
BsaJI	CCNNGG	4 cut(s)	185, 240, 419, 459
BsaWI	WCCGGW	1 cut(s)	23
BsaXI	ACNNNNNCTCC	6 cut(s)	156, 186, 624, 654, 702, 732
Bse1I	ACTGG	2 cut(s)	84, 735
Bse3DI	GCAATG	1 cut(s)	175
BseDI	CCNNGG	4 cut(s)	185, 240, 419, 459
BseMI	GCAATG	1 cut(s)	175
BseNI	ACTGG	2 cut(s)	84, 735
BseRI	GAGGAG	1 cut(s)	405
BseSI	GKGCMC	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	553
BshFI	GGCC	1 cut(s)	257
BsiHKAI	GWGCWC	2 cut(s)	146, 720
BsiHKCI	CYCGRG	1 cut(s)	713
BsiSI	CCGG	2 cut(s)	24, 645
BsiWI	CGTACG	1 cut(s)	73
BslFI	GGGAC	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	15
BsmBI	CGTCTC	1 cut(s)	15
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	257
BsoBI	CYCGRG	1 cut(s)	713
Bsp1286I	GDGCHC	2 cut(s)	146, 720
Bsp19I	CCATGG	1 cut(s)	459
BspACI	CCGC	3 cut(s)	534, 554, 657
BspANI	GGCC	1 cut(s)	257
BspHI	TCATGA	1 cut(s)	516
BspLI	GGNNCC	3 cut(s)	203, 204, 322
BspMAI	CTGCAG	1 cut(s)	529
BspQI	GCTCTTC	1 cut(s)	438
BsrDI	GCAATG	1 cut(s)	175
BsrI	ACTGG	2 cut(s)	84, 735
BssECI	CCNNGG	4 cut(s)	185, 240, 419, 459
BssT1I	CCWWGG	1 cut(s)	459
Bst4CI	ACNGT	4 cut(s)	34, 99, 136, 148
Bst6I	CTCTTC	3 cut(s)	18, 300, 438
BstC8I	GCNNGC	2 cut(s)	571, 616
BstDEI	CTNAG	1 cut(s)	60
BstDSI	CCRYGG	2 cut(s)	419, 459
BstMAI	GTCTC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	1 cut(s)	641
BstSCI	CCNGG	1 cut(s)	644
BstSFI	CTRYAG	2 cut(s)	312, 525
BstSLI	GKGCMC	1 cut(s)	146
BstV1I	GCAGC	1 cut(s)	553
BstV2I	GAAGAC	3 cut(s)	371, 484, 599
BsuRI	GGCC	1 cut(s)	257
BtgI	CCRYGG	2 cut(s)	419, 459
BtsIMutI	CAGTG	2 cut(s)	95, 728
Cac8I	GCNNGC	2 cut(s)	571, 616
CciI	TCATGA	1 cut(s)	516
Cfr13I	GGNCC	3 cut(s)	202, 255, 536
Csp6I	GTAC	4 cut(s)	74, 208, 283, 762
CviAII	CATG	7 cut(s)	293, 340, 460, 499, 517, 676, 705
CviQI	GTAC	4 cut(s)	74, 208, 283, 762
DdeI	CTNAG	1 cut(s)	60
Eam1104I	CTCTTC	3 cut(s)	18, 300, 438
EarI	CTCTTC	3 cut(s)	18, 300, 438
Ecl136II	GAGCTC	1 cut(s)	718
Eco130I	CCWWGG	1 cut(s)	459
Eco24I	GRGCYC	1 cut(s)	720
Eco47I	GGWCC	2 cut(s)	202, 536
Eco53kI	GAGCTC	1 cut(s)	718
Eco88I	CYCGRG	1 cut(s)	713
EcoICRI	GAGCTC	1 cut(s)	718
EcoO109I	RGGNCCY	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	459
EcoT38I	GRGCYC	1 cut(s)	720
ErhI	CCWWGG	1 cut(s)	459
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	7 cut(s)	296, 343, 463, 502, 520, 679, 708
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	7 cut(s)	292, 339, 459, 498, 516, 675, 704
FauNDI	CATATG	2 cut(s)	160, 232
Fnu4HI	GCNGC	1 cut(s)	567
FriOI	GRGCYC	1 cut(s)	720
Fsp4HI	GCNGC	1 cut(s)	567
FspBI	CTAG	2 cut(s)	218, 345
GluI	GCNGC	1 cut(s)	567
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	2 cut(s)	24, 645
Hin1II	CATG	7 cut(s)	296, 343, 463, 502, 520, 679, 708
HindIII	AAGCTT	2 cut(s)	124, 332
HinfI	GANTC	4 cut(s)	152, 308, 410, 679
HpaII	CCGG	2 cut(s)	24, 645
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	7 cut(s)	189, 241, 356, 476, 585, 626, 684
Hpy188III	TCNNGA	3 cut(s)	120, 437, 517
Hpy8I	GTNNAC	1 cut(s)	144
Hpy99I	CGWCG	1 cut(s)	688
HpyAV	CCTTC	5 cut(s)	75, 311, 351, 505, 524
HpyCH4III	ACNGT	4 cut(s)	34, 99, 136, 148
HpyCH4IV	ACGT	3 cut(s)	179, 214, 686
HpyCH4V	TGCA	2 cut(s)	144, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	641
HpyF3I	CTNAG	1 cut(s)	60
HpySE526I	ACGT	3 cut(s)	179, 214, 686
Hsp92II	CATG	7 cut(s)	296, 343, 463, 502, 520, 679, 708
KflI	GGGWCCC	1 cut(s)	202
LguI	GCTCTTC	1 cut(s)	438
LmnI	GCTCC	4 cut(s)	58, 320, 632, 723
LpnPI	CCDG	8 cut(s)	37, 97, 238, 273, 533, 552, 658, 716
Lsp1109I	GCAGC	1 cut(s)	553
MaeI	CTAG	2 cut(s)	218, 345
MaeII	ACGT	3 cut(s)	179, 214, 686
MaeIII	GTNAC	2 cut(s)	99, 263
MhlI	GDGCHC	2 cut(s)	146, 720
MluCI	AATT	2 cut(s)	79, 627
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	2 cut(s)	488, 707
MnlI	CCTC	9 cut(s)	16, 158, 195, 235, 268, 400, 426, 465, 497
MseI	TTAA	3 cut(s)	381, 620, 665
MslI	CAYNNNNRTG	1 cut(s)	674
MspI	CCGG	2 cut(s)	24, 645
MspR9I	CCNGG	1 cut(s)	646
MwoI	GCNNNNNNNGC	1 cut(s)	641
NciI	CCSGG	1 cut(s)	646
NcoI	CCATGG	1 cut(s)	459
NdeI	CATATG	2 cut(s)	160, 232
NlaIII	CATG	7 cut(s)	296, 343, 463, 502, 520, 679, 708
NlaIV	GGNNCC	3 cut(s)	203, 204, 322
PaeR7I	CTCGAG	1 cut(s)	713
PagI	TCATGA	1 cut(s)	516
PciSI	GCTCTTC	1 cut(s)	438
PfeI	GAWTC	3 cut(s)	152, 410, 679
Pfl23II	CGTACG	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	568
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PpuMI	RGGWCCY	1 cut(s)	202
Psp124BI	GAGCTC	1 cut(s)	720
Psp5II	RGGWCCY	1 cut(s)	202
PspLI	CGTACG	1 cut(s)	73
PspN4I	GGNNCC	3 cut(s)	203, 204, 322
PspPI	GGNCC	3 cut(s)	202, 255, 536
PspPPI	RGGWCCY	1 cut(s)	202
PspXI	VCTCGAGB	1 cut(s)	713
PstI	CTGCAG	1 cut(s)	529
RsaI	GTAC	4 cut(s)	75, 209, 284, 763
RsaNI	GTAC	4 cut(s)	74, 208, 283, 762
RseI	CAYNNNNRTG	1 cut(s)	674
SacI	GAGCTC	1 cut(s)	720
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	3 cut(s)	381, 620, 665
SatI	GCNGC	1 cut(s)	567
Sau96I	GGNCC	3 cut(s)	202, 255, 536
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	646
SduI	GDGCHC	2 cut(s)	146, 720
SfcI	CTRYAG	2 cut(s)	312, 525
Sfr274I	CTCGAG	1 cut(s)	713
SinI	GGWCC	2 cut(s)	202, 536
SlaI	CTCGAG	1 cut(s)	713
SmiMI	CAYNNNNRTG	1 cut(s)	674
SmlI	CTYRAG	2 cut(s)	713, 770
SmoI	CTYRAG	2 cut(s)	713, 770
Sse9I	AATT	2 cut(s)	79, 627
SsiI	CCGC	3 cut(s)	534, 554, 657
SspMI	CTAG	2 cut(s)	218, 345
SstI	GAGCTC	1 cut(s)	720
StyD4I	CCNGG	1 cut(s)	644
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	4 cut(s)	34, 99, 136, 148
TaiI	ACGT	3 cut(s)	182, 217, 689
TaqI	TCGA	3 cut(s)	119, 438, 714
TasI	AATT	2 cut(s)	79, 627
TatI	WGTACW	1 cut(s)	761
TfiI	GAWTC	3 cut(s)	152, 410, 679
Tru1I	TTAA	3 cut(s)	381, 620, 665
Tru9I	TTAA	3 cut(s)	381, 620, 665
TscAI	CASTG	2 cut(s)	102, 735
TseI	GCWGC	1 cut(s)	566
TspDTI	ATGAA	4 cut(s)	147, 309, 487, 533
TspGWI	ACGGA	1 cut(s)	408
TspRI	CASTG	2 cut(s)	102, 735
VneI	GTGCAC	1 cut(s)	142
VpaK11BI	GGWCC	2 cut(s)	202, 536
XapI	RAATTY	1 cut(s)	79
XhoI	CTCGAG	1 cut(s)	713
XspI	CTAG	2 cut(s)	218, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.