Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0014507

Physical Location & Seq

Genomic Coordinates Reverse (-)

30162410 .. 30164998

Gene Structure 2589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1218800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCCTCCCTCTCCATCTCCTCCCCCAATTTCACCACCGCTTTCCTCGGCCACAAACTTAAATTTCTCGAAAATTCGAAGAAGCTGCCAACTTGTTGCTCCGTTGTACGAGCTCCTAGATGTGCTGCTGCTGGTACATCTTATGGAGGTAATGCTCCAAAATTCCCTAGAATCAGTGTTTGGGATCCGTATAAACGTCTTGGTGTGACCTATGAATCAATTGAAGCTGCTTTTGAGAAAATCTTGATGACCAGCTTCCAGCAGAGGAAGAAAACAAAAATTAATTTGAAGAGCAAGTTGAAAAAGAAAGTTGAAGAGTCTCCGCCTTGGGTTAAGAACCTGCTCAATTTTGTGGAAGTTCCACCTGTTGAAGTTATTTTTAGAAGATTGTTCCTCTTTGCGTTCATGGGTGGCTGGAGTATCATGAACTCAGCTGAAGGTGGACCTGCATTTCAGGTGGCGGTCTCCTTGGCAGCTTGCATCTATTTCCTCAACGAGAAGACAAAGAGCTTGGCCAGAGCTTCCATTTTCGGACTTGGAGCTCTTGTCACTGGTTGGGTATGCGGTTCGGTCTTGGTCCCGAATATTCCATCAATGCTCTTGCACCCGACTTGGACCCTCGAACTTCTAACTTCACTCGTAGTGTACCTGTTCTTGTTTCTTGCTTGCACCTTTCTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006457 GO:0006996 GO:0007275 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009639 GO:0009640 GO:0009657 GO:0009658 GO:0009704 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033157 GO:0034357 GO:0034762 GO:0034764 GO:0042170 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048518 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0055035 GO:0060341 GO:0061077 GO:0061458 GO:0065007 GO:0070201 GO:0071840 GO:0090087 GO:0090316 GO:1903533 GO:1903827 GO:1903829 GO:1904215 GO:1904216 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CPP1-like

Protein Analysis

228

Amino Acids

25.15

Weight (kDa)

9.77

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPP1-like	PF11833	70 - 226	5.8e-48	Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23040 AT5G23040
fragaria_vesca	FvH4_5g12961
malus_domestica	MD06G1208500.v1.1 MD14G1218800.v1.1
prunus_persica	Prupe.5G213000_v2.0.a1
pyrus_communis	pycom06g18630
rosa_chinensis	RchiOBHm_Chr7g0184201
rosa_laevigata	RLG00000004994
rosa_multiflora	Rmu_co8396789.1_g000001 Rmu_sc0012221.1_g000008
rosa_rugosa	Rorug06G0463800
rosa_samantha	Rh7AG082000 Rh7BG065200 Rh7CG065600 Rh7DG065300
rosa_wichuraiana	Rw7G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	348, 454
AciI	CCGC	4 cut(s)	39, 323, 461, 564
AclWI	GGATC	2 cut(s)	179, 192
AcoI	YGGCCR	2 cut(s)	49, 513
AcsI	RAATTY	3 cut(s)	62, 73, 161
AcuI	CTGAAG	1 cut(s)	456
AfaI	GTAC	3 cut(s)	108, 136, 647
AgsI	TTSAA	5 cut(s)	224, 289, 301, 314, 371
AjuI	GAANNNNNNNTTGG	2 cut(s)	163, 195
AluBI	AGCT	9 cut(s)	85, 113, 227, 255, 434, 476, 510, 521, 542
AluI	AGCT	9 cut(s)	85, 113, 227, 255, 434, 476, 510, 521, 542
Alw21I	GWGCWC	2 cut(s)	115, 544
Alw26I	GTCTC	2 cut(s)	324, 469
AlwI	GGATC	2 cut(s)	179, 192
AoxI	GGCC	3 cut(s)	3, 49, 513
ApeKI	GCWGC	5 cut(s)	85, 125, 128, 227, 473
ApoI	RAATTY	3 cut(s)	62, 73, 161
AseI	ATTAAT	1 cut(s)	282
AspS9I	GGNCC	3 cut(s)	443, 577, 615
AsuHPI	GGTGA	1 cut(s)	25
AsuII	TTCGAA	1 cut(s)	77
AvaII	GGWCC	3 cut(s)	443, 577, 615
BalI	TGGCCA	1 cut(s)	515
BamHI	GGATCC	1 cut(s)	184
BanII	GRGCYC	2 cut(s)	115, 544
BbsI	GAAGAC	1 cut(s)	506
Bbv12I	GWGCWC	2 cut(s)	115, 544
BbvI	GCAGC	5 cut(s)	72, 112, 115, 214, 485
BccI	CCATC	2 cut(s)	23, 598
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BcoDI	GTCTC	2 cut(s)	324, 469
BfaI	CTAG	2 cut(s)	117, 168
BfuAI	ACCTGC	2 cut(s)	348, 454
BisI	GCNGC	5 cut(s)	86, 126, 129, 228, 474
BlsI	GCNGC	5 cut(s)	87, 127, 130, 229, 475
Bme18I	GGWCC	3 cut(s)	443, 577, 615
BmgT120I	GGNCC	3 cut(s)	443, 577, 615
BmiI	GGNNCC	3 cut(s)	186, 579, 617
BmsI	GCATC	1 cut(s)	489
BpiI	GAAGAC	1 cut(s)	506
BpmI	CTGGAG	1 cut(s)	436
Bpu14I	TTCGAA	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	662
BsaI	GGTCTC	1 cut(s)	469
BsaJI	CCNNGG	3 cut(s)	46, 326, 468
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bse1I	ACTGG	1 cut(s)	556
BseDI	CCNNGG	3 cut(s)	46, 326, 468
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	556
BseRI	GAGGAG	1 cut(s)	10
BseXI	GCAGC	5 cut(s)	72, 112, 115, 214, 485
BshFI	GGCC	3 cut(s)	5, 51, 515
BsiHKAI	GWGCWC	2 cut(s)	115, 544
BslFI	GGGAC	1 cut(s)	563
BsmAI	GTCTC	2 cut(s)	324, 469
BsmFI	GGGAC	1 cut(s)	563
BsnI	GGCC	3 cut(s)	5, 51, 515
Bso31I	GGTCTC	1 cut(s)	469
Bsp119I	TTCGAA	1 cut(s)	77
Bsp1286I	GDGCHC	2 cut(s)	115, 544
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	4 cut(s)	39, 323, 461, 564
BspANI	GGCC	3 cut(s)	5, 51, 515
BspCNI	CTCAG	1 cut(s)	443
BspHI	TCATGA	1 cut(s)	423
BspLI	GGNNCC	3 cut(s)	186, 579, 617
BspMI	ACCTGC	2 cut(s)	348, 454
BspPI	GGATC	2 cut(s)	179, 192
BspQI	GCTCTTC	1 cut(s)	284
BspT104I	TTCGAA	1 cut(s)	77
BspTNI	GGTCTC	1 cut(s)	469
BsrI	ACTGG	1 cut(s)	556
BssECI	CCNNGG	3 cut(s)	46, 326, 468
BssMI	GATC	1 cut(s)	184
BssT1I	CCWWGG	2 cut(s)	326, 468
Bst6I	CTCTTC	2 cut(s)	284, 309
BstBI	TTCGAA	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	478, 667
BstDEI	CTNAG	1 cut(s)	430
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	2 cut(s)	324, 469
BstMBI	GATC	1 cut(s)	184
BstV1I	GCAGC	5 cut(s)	72, 112, 115, 214, 485
BstV2I	GAAGAC	1 cut(s)	506
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	3 cut(s)	5, 51, 515
BtsIMutI	CAGTG	2 cut(s)	181, 549
BveI	ACCTGC	2 cut(s)	348, 454
Cac8I	GCNNGC	2 cut(s)	478, 667
CciI	TCATGA	1 cut(s)	423
Cfr13I	GGNCC	3 cut(s)	443, 577, 615
Csp6I	GTAC	3 cut(s)	107, 135, 646
CviAII	CATG	2 cut(s)	406, 424
CviQI	GTAC	3 cut(s)	107, 135, 646
DdeI	CTNAG	1 cut(s)	430
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
EaeI	YGGCCR	2 cut(s)	49, 513
Eam1104I	CTCTTC	2 cut(s)	284, 309
EarI	CTCTTC	2 cut(s)	284, 309
EciI	GGCGGA	1 cut(s)	312
Ecl136II	GAGCTC	2 cut(s)	113, 542
Eco130I	CCWWGG	2 cut(s)	326, 468
Eco24I	GRGCYC	2 cut(s)	115, 544
Eco31I	GGTCTC	1 cut(s)	469
Eco47I	GGWCC	3 cut(s)	443, 577, 615
Eco53kI	GAGCTC	2 cut(s)	113, 542
Eco57I	CTGAAG	1 cut(s)	456
EcoICRI	GAGCTC	2 cut(s)	113, 542
EcoT14I	CCWWGG	2 cut(s)	326, 468
EcoT38I	GRGCYC	2 cut(s)	115, 544
ErhI	CCWWGG	2 cut(s)	326, 468
FaeI	CATG	2 cut(s)	409, 427
FaiI	YATR	6 cut(s)	144, 192, 213, 407, 425, 562
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	2 cut(s)	405, 423
Fnu4HI	GCNGC	5 cut(s)	86, 126, 129, 228, 474
FriOI	GRGCYC	2 cut(s)	115, 544
Fsp4HI	GCNGC	5 cut(s)	86, 126, 129, 228, 474
FspBI	CTAG	2 cut(s)	117, 168
GluI	GCNGC	5 cut(s)	86, 126, 129, 228, 474
GsuI	CTGGAG	1 cut(s)	436
HaeIII	GGCC	3 cut(s)	5, 51, 515
Hin1II	CATG	2 cut(s)	409, 427
HinfI	GANTC	3 cut(s)	171, 215, 317
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	2 cut(s)	443, 646
Hpy188I	TCNGA	1 cut(s)	533
Hpy188III	TCNNGA	4 cut(s)	68, 244, 424, 580
Hpy8I	GTNNAC	2 cut(s)	443, 646
HpyAV	CCTTC	1 cut(s)	431
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	4 cut(s)	449, 480, 604, 669
HpyF3I	CTNAG	1 cut(s)	430
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	2 cut(s)	409, 427
Kzo9I	GATC	1 cut(s)	184
LguI	GCTCTTC	1 cut(s)	284
LmnI	GCTCC	4 cut(s)	104, 118, 160, 539
Lsp1109I	GCAGC	5 cut(s)	72, 112, 115, 214, 485
LweI	GCATC	1 cut(s)	489
MaeI	CTAG	2 cut(s)	117, 168
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	2 cut(s)	205, 547
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	6 cut(s)	91, 280, 301, 326, 396, 511
MfeI	CAATTG	1 cut(s)	219
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	2 cut(s)	115, 544
MlsI	TGGCCA	1 cut(s)	515
MluCI	AATT	8 cut(s)	28, 62, 73, 161, 219, 279, 283, 346
MluNI	TGGCCA	1 cut(s)	515
MlyI	GAGTC	1 cut(s)	326
MnlI	CCTC	9 cut(s)	16, 20, 31, 56, 140, 258, 404, 500, 629
Mox20I	TGGCCA	1 cut(s)	515
MscI	TGGCCA	1 cut(s)	515
MseI	TTAA	3 cut(s)	60, 282, 333
Msp20I	TGGCCA	1 cut(s)	515
MspA1I	CMGCKG	1 cut(s)	434
MunI	CAATTG	1 cut(s)	219
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	2 cut(s)	409, 427
NlaIV	GGNNCC	3 cut(s)	186, 579, 617
NmeAIII	GCCGAG	1 cut(s)	27
NmuCI	GTSAC	2 cut(s)	205, 547
NspV	TTCGAA	1 cut(s)	77
PagI	TCATGA	1 cut(s)	423
PciSI	GCTCTTC	1 cut(s)	284
PfeI	GAWTC	2 cut(s)	171, 215
PkrI	GCNGC	5 cut(s)	87, 127, 130, 229, 475
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PshBI	ATTAAT	1 cut(s)	282
Psp124BI	GAGCTC	2 cut(s)	115, 544
PspN4I	GGNNCC	3 cut(s)	186, 579, 617
PspPI	GGNCC	3 cut(s)	443, 577, 615
PsuI	RGATCY	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	3 cut(s)	108, 136, 647
RsaNI	GTAC	3 cut(s)	107, 135, 646
SacI	GAGCTC	2 cut(s)	115, 544
SapI	GCTCTTC	1 cut(s)	284
SaqAI	TTAA	3 cut(s)	60, 282, 333
SatI	GCNGC	5 cut(s)	86, 126, 129, 228, 474
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	3 cut(s)	443, 577, 615
SchI	GAGTC	1 cut(s)	326
SduI	GDGCHC	2 cut(s)	115, 544
SfaNI	GCATC	1 cut(s)	489
SfuI	TTCGAA	1 cut(s)	77
SinI	GGWCC	3 cut(s)	443, 577, 615
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
Sse9I	AATT	8 cut(s)	28, 62, 73, 161, 219, 279, 283, 346
SsiI	CCGC	4 cut(s)	39, 323, 461, 564
SspI	AATATT	1 cut(s)	586
SspMI	CTAG	2 cut(s)	117, 168
SstI	GAGCTC	2 cut(s)	115, 544
StyI	CCWWGG	2 cut(s)	326, 468
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	3 cut(s)	69, 77, 621
TaqII	GACCGA	1 cut(s)	559
TasI	AATT	8 cut(s)	28, 62, 73, 161, 219, 279, 283, 346
TfiI	GAWTC	2 cut(s)	171, 215
Tru1I	TTAA	3 cut(s)	60, 282, 333
Tru9I	TTAA	3 cut(s)	60, 282, 333
TscAI	CASTG	2 cut(s)	181, 556
TseFI	GTSAC	2 cut(s)	205, 547
TseI	GCWGC	5 cut(s)	85, 125, 128, 227, 473
Tsp45I	GTSAC	2 cut(s)	205, 547
TspDTI	ATGAA	3 cut(s)	228, 394, 440
TspGWI	ACGGA	2 cut(s)	91, 177
TspRI	CASTG	2 cut(s)	181, 556
VpaK11BI	GGWCC	3 cut(s)	443, 577, 615
VspI	ATTAAT	1 cut(s)	282
XapI	RAATTY	3 cut(s)	62, 73, 161
XspI	CTAG	2 cut(s)	117, 168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.