Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8396789.1

Orthogroup ID

OG0014507

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1250

Gene Structure 1249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8396789.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 505 bp

gattatgtaaattgatttcgatttcttttgttcttgctagtacttttcgtgaaaataccaagcggcaaaactgttgcttctttcggcgaagccctagatgtgcagctctatcctacggaggtaatgctccgaagtttccccgggtcagtgtttgggatccctataagcgtcttggtgtgaaccaagatgcttctgaggaggagatatggggatcgcgcaactttctcttgcaacagtatgctggacatgagagaagtgaagagtcaattgaagctgcttttgagaaaatattgatgacaagcttccagcagaggaagaaaacaaaaatcaacttgaagagcaggttaaagaagaaagtagaagagtctccaccttgggttaagaatttgcttaatttcgtggaacttccagcgactgaagttatttttagaagattgttcctctttgcattcatgggtggctggagtattatgaactcagcggaaggtggacctgcttttcaggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006457 GO:0006996 GO:0007275 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009639 GO:0009640 GO:0009657 GO:0009658 GO:0009704 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033157 GO:0034357 GO:0034762 GO:0034764 GO:0042170 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048518 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0055035 GO:0060341 GO:0061077 GO:0061458 GO:0065007 GO:0070201 GO:0071840 GO:0090087 GO:0090316 GO:1903533 GO:1903827 GO:1903829 GO:1904215 GO:1904216 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CPP1-like

Protein Analysis

168

Amino Acids

19.36

Weight (kDa)

9.73

Isoelectric Point (pI)

60.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23040 AT5G23040
fragaria_vesca	FvH4_5g12961
malus_domestica	MD06G1208500.v1.1 MD14G1218800.v1.1
prunus_persica	Prupe.5G213000_v2.0.a1
pyrus_communis	pycom06g18630
rosa_chinensis	RchiOBHm_Chr7g0184201
rosa_laevigata	RLG00000004994
rosa_multiflora	Rmu_co8396789.1_g000001 Rmu_sc0012221.1_g000008
rosa_rugosa	Rorug06G0463800
rosa_samantha	Rh7AG082000 Rh7BG065200 Rh7CG065600 Rh7DG065300
rosa_wichuraiana	Rw7G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	332, 501
AccII	CGCG	1 cut(s)	216
AciI	CCGC	2 cut(s)	63, 481
AclWI	GGATC	3 cut(s)	151, 164, 219
AcsI	RAATTY	1 cut(s)	384
AcuI	CTGAAG	1 cut(s)	437
AfaI	GTAC	1 cut(s)	42
AgsI	TTSAA	2 cut(s)	271, 336
AluBI	AGCT	3 cut(s)	106, 274, 302
AluI	AGCT	3 cut(s)	106, 274, 302
Alw26I	GTCTC	1 cut(s)	371
AlwI	GGATC	3 cut(s)	151, 164, 219
AlwNI	CAGNNNCTG	1 cut(s)	415
Ama87I	CYCGRG	1 cut(s)	140
ApeKI	GCWGC	2 cut(s)	103, 274
ApoI	RAATTY	1 cut(s)	384
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	490
AsuC2I	CCSGG	2 cut(s)	141, 142
AvaI	CYCGRG	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	490
BamHI	GGATCC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	115, 261
BcnI	CCSGG	2 cut(s)	141, 142
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	2 cut(s)	38, 95
BfuAI	ACCTGC	2 cut(s)	332, 501
BisI	GCNGC	3 cut(s)	64, 104, 275
BlsI	GCNGC	3 cut(s)	65, 105, 276
BmcAI	AGTACT	1 cut(s)	42
Bme1390I	CCNGG	2 cut(s)	141, 142
Bme18I	GGWCC	1 cut(s)	490
BmeT110I	CYCGRG	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	490
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	2 cut(s)	141, 142
BmsI	GCATC	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	483
BpuMI	CCSGG	2 cut(s)	141, 142
BsaJI	CCNNGG	3 cut(s)	139, 140, 373
BseDI	CCNNGG	3 cut(s)	139, 140, 373
BseMII	CTCAG	2 cut(s)	185, 491
BseRI	GAGGAG	2 cut(s)	211, 214
BseXI	GCAGC	2 cut(s)	115, 261
BsgI	GTGCAG	1 cut(s)	122
Bsh1236I	CGCG	1 cut(s)	216
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	141
BsmAI	GTCTC	1 cut(s)	371
BsmI	GAATGC	1 cut(s)	448
BsoBI	CYCGRG	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	156, 211
BspACI	CCGC	2 cut(s)	63, 481
BspCNI	CTCAG	2 cut(s)	186, 490
BspFNI	CGCG	1 cut(s)	216
BspLI	GGNNCC	1 cut(s)	158
BspMI	ACCTGC	2 cut(s)	332, 501
BspPI	GGATC	3 cut(s)	151, 164, 219
BspQI	GCTCTTC	1 cut(s)	331
BssECI	CCNNGG	3 cut(s)	139, 140, 373
BssMI	GATC	2 cut(s)	156, 211
BssT1I	CCWWGG	1 cut(s)	373
Bst4CI	ACNGT	2 cut(s)	73, 236
Bst6I	CTCTTC	3 cut(s)	254, 331, 356
BstDEI	CTNAG	2 cut(s)	194, 477
BstFNI	CGCG	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	2 cut(s)	159, 214
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	2 cut(s)	156, 211
BstSCI	CCNGG	2 cut(s)	139, 140
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	2 cut(s)	115, 261
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	153
BveI	ACCTGC	2 cut(s)	332, 501
CaiI	CAGNNNCTG	1 cut(s)	415
CfoI	GCGC	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	490
Cfr9I	CCCGGG	1 cut(s)	140
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	41
CviAII	CATG	2 cut(s)	247, 453
CviJI	RGCY	5 cut(s)	92, 106, 274, 302, 461
CviKI_1	RGCY	5 cut(s)	92, 106, 274, 302, 461
CviQI	GTAC	1 cut(s)	41
DdeI	CTNAG	2 cut(s)	194, 477
DpnI	GATC	2 cut(s)	158, 213
DpnII	GATC	2 cut(s)	156, 211
Eam1104I	CTCTTC	3 cut(s)	254, 331, 356
EarI	CTCTTC	3 cut(s)	254, 331, 356
Eco130I	CCWWGG	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	490
Eco57I	CTGAAG	1 cut(s)	437
Eco88I	CYCGRG	1 cut(s)	140
EcoT14I	CCWWGG	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	2 cut(s)	250, 456
FaiI	YATR	7 cut(s)	6, 164, 207, 239, 248, 454, 472
FatI	CATG	2 cut(s)	246, 452
Fnu4HI	GCNGC	3 cut(s)	64, 104, 275
Fsp4HI	GCNGC	3 cut(s)	64, 104, 275
FspBI	CTAG	2 cut(s)	38, 95
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	3 cut(s)	64, 104, 275
GsuI	CTGGAG	1 cut(s)	483
HapII	CCGG	1 cut(s)	141
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	2 cut(s)	250, 456
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HindIII	AAGCTT	1 cut(s)	300
HinfI	GANTC	2 cut(s)	262, 364
HpaII	CCGG	1 cut(s)	141
Hpy166II	GTNNAC	2 cut(s)	180, 490
Hpy188I	TCNGA	2 cut(s)	131, 195
Hpy188III	TCNNGA	1 cut(s)	49
Hpy8I	GTNNAC	2 cut(s)	180, 490
HpyAV	CCTTC	1 cut(s)	478
HpyCH4III	ACNGT	2 cut(s)	73, 236
HpyCH4V	TGCA	3 cut(s)	103, 231, 448
HpyF3I	CTNAG	2 cut(s)	194, 477
Hsp92II	CATG	2 cut(s)	250, 456
HspAI	GCGC	1 cut(s)	216
Kzo9I	GATC	2 cut(s)	156, 211
LguI	GCTCTTC	1 cut(s)	331
LmnI	GCTCC	1 cut(s)	132
LpnPI	CCDG	7 cut(s)	154, 227, 319, 327, 422, 447, 487
Lsp1109I	GCAGC	2 cut(s)	115, 261
LweI	GCATC	1 cut(s)	177
MaeI	CTAG	2 cut(s)	38, 95
MalI	GATC	2 cut(s)	158, 213
MboI	GATC	2 cut(s)	156, 211
MboII	GAAGA	6 cut(s)	271, 327, 348, 363, 373, 443
MfeI	CAATTG	1 cut(s)	266
MflI	RGATCY	1 cut(s)	156
MluCI	AATT	4 cut(s)	10, 266, 384, 393
MlyI	GAGTC	2 cut(s)	271, 373
MnlI	CCTC	5 cut(s)	112, 189, 192, 305, 451
MseI	TTAA	3 cut(s)	346, 380, 392
MspA1I	CMGCKG	1 cut(s)	481
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	141, 142
MunI	CAATTG	1 cut(s)	266
Mva1269I	GAATGC	1 cut(s)	448
MvnI	CGCG	1 cut(s)	216
NciI	CCSGG	2 cut(s)	141, 142
NdeII	GATC	2 cut(s)	156, 211
NlaIII	CATG	2 cut(s)	250, 456
NlaIV	GGNNCC	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	331
PctI	GAATGC	1 cut(s)	448
PkrI	GCNGC	3 cut(s)	65, 105, 276
PleI	GAGTC	2 cut(s)	270, 372
PpsI	GAGTC	2 cut(s)	270, 372
PspN4I	GGNNCC	1 cut(s)	158
PspPI	GGNCC	1 cut(s)	490
PstNI	CAGNNNCTG	1 cut(s)	415
PsuI	RGATCY	1 cut(s)	156
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
SapI	GCTCTTC	1 cut(s)	331
SaqAI	TTAA	3 cut(s)	346, 380, 392
SatI	GCNGC	3 cut(s)	64, 104, 275
Sau3AI	GATC	2 cut(s)	156, 211
Sau96I	GGNCC	1 cut(s)	490
ScaI	AGTACT	1 cut(s)	42
SchI	GAGTC	2 cut(s)	271, 373
ScrFI	CCNGG	2 cut(s)	141, 142
SetI	ASST	8 cut(s)	108, 123, 276, 304, 346, 375, 489, 495
SfaNI	GCATC	1 cut(s)	177
SinI	GGWCC	1 cut(s)	490
SmaI	CCCGGG	1 cut(s)	142
Sse9I	AATT	4 cut(s)	10, 266, 384, 393
SsiI	CCGC	2 cut(s)	63, 481
SspI	AATATT	1 cut(s)	290
SspMI	CTAG	2 cut(s)	38, 95
StyD4I	CCNGG	2 cut(s)	139, 140
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	2 cut(s)	73, 236
TaqI	TCGA	1 cut(s)	19
TasI	AATT	4 cut(s)	10, 266, 384, 393
TatI	WGTACW	1 cut(s)	40
TauI	GCSGC	1 cut(s)	66
Tru1I	TTAA	3 cut(s)	346, 380, 392
Tru9I	TTAA	3 cut(s)	346, 380, 392
TscAI	CASTG	1 cut(s)	153
TseI	GCWGC	2 cut(s)	103, 274
TspDTI	ATGAA	2 cut(s)	441, 487
TspGWI	ACGGA	1 cut(s)	131
TspMI	CCCGGG	1 cut(s)	140
TspRI	CASTG	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	490
XapI	RAATTY	1 cut(s)	384
XmaI	CCCGGG	1 cut(s)	140
XspI	CTAG	2 cut(s)	38, 95
ZrmI	AGTACT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.