Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0014507

Physical Location & Seq

Genomic Coordinates Forward (+)

7330369 .. 7332276

Gene Structure 1908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g12961.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCGACCATGGCCTCTCTCGCCGTCGCCGCCCCCAATTTCACGACCTCCTTCCTCGGCAAGAAACTTAGCTTTCGTGAAAATACGAAGCTGCAAAAGAGTTGCTCCTTCCTGCGAAACCCTAGGTGTGCAGCTACATCCTATGGAGGTAATACTCCCAAGTTCCCTCGGGTCAGTGTTTGGGATCCATATAAGCGTCTTGGTGTGAACCAGGATGCTTCTGAGGAGGAGATTTGGGGATCGCGCAACTTTCTATTGCAACAGTATGCGGGACATGAGAGAAGTGAGGAGTCAATTGAAGCTGCTTTCGAGAAAATATTGATGACAAGCTTCAAGCAGAGGAAGAAAACAAAAATCAACTTGAAGAGCAGGTTAAAGAACAAAGTTGAAGAGTCTCCACCTTGGGTTAAGAATTTGCTCAGTTTTGTGGAAATTCCAGCCACTGAAGTTATTTTTAGAAGATTGTTCCTCTTTGCATTCATGGGTGGCTGGAGTATTATGAACTCAGCTGAAGGGGGACCTGCTTTTCAGGTGGCTGTGTCCTTGGCAGCTTGCATATACTTCCTAAATGATAAGATAAAGAGCTTGGCCAGAGCTTCTGTTTATGGACTTGGAGCACTCGTTGCAGGTTGGGTGTGCGGTTCAATCTTGATTCCAAATATTCCTTCAATGTTCTTAAACCCGACTTGGACTCTCGAACTTCTAACGTCACTAGTAGTTTATGTGTTCCTGTTCCTTGCTTGCACTTTTCTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006457 GO:0006996 GO:0007275 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009639 GO:0009640 GO:0009657 GO:0009658 GO:0009704 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033157 GO:0034357 GO:0034762 GO:0034764 GO:0042170 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048518 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0055035 GO:0060341 GO:0061077 GO:0061458 GO:0065007 GO:0070201 GO:0071840 GO:0090087 GO:0090316 GO:1903533 GO:1903827 GO:1903829 GO:1904215 GO:1904216 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CPP1-like

Protein Analysis

253

Amino Acids

28.21

Weight (kDa)

9.61

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPP1-like	PF11833	71 - 251	8.8e-60	Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23040 AT5G23040
fragaria_vesca	FvH4_5g12961
malus_domestica	MD06G1208500.v1.1 MD14G1218800.v1.1
prunus_persica	Prupe.5G213000_v2.0.a1
pyrus_communis	pycom06g18630
rosa_chinensis	RchiOBHm_Chr7g0184201
rosa_laevigata	RLG00000004994
rosa_multiflora	Rmu_co8396789.1_g000001 Rmu_sc0012221.1_g000008
rosa_rugosa	Rorug06G0463800
rosa_samantha	Rh7AG082000 Rh7BG065200 Rh7CG065600 Rh7DG065300
rosa_wichuraiana	Rw7G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	360, 529, 617
AccII	CGCG	1 cut(s)	244
AciI	CCGC	3 cut(s)	30, 269, 639
AclWI	GGATC	3 cut(s)	179, 192, 247
AcoI	YGGCCR	1 cut(s)	588
AcsI	RAATTY	2 cut(s)	412, 432
AcuI	CTGAAG	2 cut(s)	465, 531
AgsI	TTSAA	6 cut(s)	299, 334, 364, 389, 645, 669
AhlI	ACTAGT	1 cut(s)	712
AjnI	CCWGG	1 cut(s)	210
AjuI	GAANNNNNNNTTGG	2 cut(s)	649, 681
AluBI	AGCT	9 cut(s)	72, 91, 134, 302, 330, 509, 551, 585, 596
AluI	AGCT	9 cut(s)	72, 91, 134, 302, 330, 509, 551, 585, 596
Alw21I	GWGCWC	1 cut(s)	619
Alw26I	GTCTC	1 cut(s)	399
AlwI	GGATC	3 cut(s)	179, 192, 247
AlwNI	CAGNNNCTG	1 cut(s)	443
Ama87I	CYCGRG	1 cut(s)	168
AoxI	GGCC	2 cut(s)	12, 588
ApeKI	GCWGC	4 cut(s)	91, 131, 302, 548
ApoI	RAATTY	2 cut(s)	412, 432
AspA2I	CCTAGG	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	1 cut(s)	518
AvaI	CYCGRG	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	518
AvrII	CCTAGG	1 cut(s)	122
BalI	TGGCCA	1 cut(s)	590
BamHI	GGATCC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	619
BbvI	GCAGC	4 cut(s)	78, 143, 289, 560
BceAI	ACGGC	1 cut(s)	8
BciT130I	CCWGG	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	399
BcuI	ACTAGT	1 cut(s)	712
BfaI	CTAG	2 cut(s)	123, 713
BfuAI	ACCTGC	3 cut(s)	360, 529, 617
BisI	GCNGC	5 cut(s)	30, 92, 132, 303, 549
BlnI	CCTAGG	1 cut(s)	122
BlsI	GCNGC	5 cut(s)	31, 93, 133, 304, 550
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	1 cut(s)	518
BmeT110I	CYCGRG	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	518
BmiI	GGNNCC	2 cut(s)	186, 519
BmrFI	CCNGG	1 cut(s)	212
BmsI	GCATC	1 cut(s)	205
BpmI	CTGGAG	1 cut(s)	511
BpuEI	CTTGAG	1 cut(s)	737
BsaJI	CCNNGG	6 cut(s)	9, 55, 122, 167, 401, 543
BsaXI	ACNNNNNCTCC	2 cut(s)	606, 636
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	6 cut(s)	9, 55, 122, 167, 401, 543
BseGI	GGATG	2 cut(s)	137, 220
BseMII	CTCAG	3 cut(s)	213, 433, 519
BseRI	GAGGAG	3 cut(s)	239, 242, 302
BseXI	GCAGC	4 cut(s)	78, 143, 289, 560
BsgI	GTGCAG	1 cut(s)	150
Bsh1236I	CGCG	1 cut(s)	244
BshFI	GGCC	2 cut(s)	14, 590
BsiHKAI	GWGCWC	1 cut(s)	619
BsiHKCI	CYCGRG	1 cut(s)	168
BslFI	GGGAC	2 cut(s)	285, 531
BsmAI	GTCTC	1 cut(s)	399
BsmFI	GGGAC	2 cut(s)	285, 531
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	2 cut(s)	14, 590
BsoBI	CYCGRG	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	619
Bsp143I	GATC	2 cut(s)	184, 239
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	3 cut(s)	30, 269, 639
BspANI	GGCC	2 cut(s)	14, 590
BspCNI	CTCAG	3 cut(s)	214, 432, 518
BspFNI	CGCG	1 cut(s)	244
BspLI	GGNNCC	2 cut(s)	186, 519
BspMI	ACCTGC	3 cut(s)	360, 529, 617
BspPI	GGATC	3 cut(s)	179, 192, 247
BspQI	GCTCTTC	1 cut(s)	359
BssECI	CCNNGG	6 cut(s)	9, 55, 122, 167, 401, 543
BssMI	GATC	2 cut(s)	184, 239
BssT1I	CCWWGG	4 cut(s)	9, 122, 401, 543
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	264
Bst6I	CTCTTC	2 cut(s)	359, 384
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstC8I	GCNNGC	2 cut(s)	553, 742
BstDEI	CTNAG	4 cut(s)	68, 222, 419, 505
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	137, 220
BstFNI	CGCG	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	2 cut(s)	187, 242
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	2 cut(s)	184, 239
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 20, 29, 623
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	210
BstUI	CGCG	1 cut(s)	244
BstV1I	GCAGC	4 cut(s)	78, 143, 289, 560
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	14, 590
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	137, 220
BtsIMutI	CAGTG	2 cut(s)	181, 441
BveI	ACCTGC	3 cut(s)	360, 529, 617
Cac8I	GCNNGC	2 cut(s)	553, 742
CaiI	CAGNNNCTG	1 cut(s)	443
CfoI	GCGC	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	518
CseI	GACGC	1 cut(s)	185
CviAII	CATG	3 cut(s)	10, 275, 481
DdeI	CTNAG	4 cut(s)	68, 222, 419, 505
DpnI	GATC	2 cut(s)	186, 241
DpnII	GATC	2 cut(s)	184, 239
EaeI	YGGCCR	1 cut(s)	588
Eam1104I	CTCTTC	2 cut(s)	359, 384
EarI	CTCTTC	2 cut(s)	359, 384
Eco130I	CCWWGG	4 cut(s)	9, 122, 401, 543
Eco47I	GGWCC	1 cut(s)	518
Eco57I	CTGAAG	2 cut(s)	465, 531
Eco88I	CYCGRG	1 cut(s)	168
EcoO109I	RGGNCCY	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	210
EcoT14I	CCWWGG	4 cut(s)	9, 122, 401, 543
ErhI	CCWWGG	4 cut(s)	9, 122, 401, 543
FaeI	CATG	3 cut(s)	13, 278, 484
FaqI	GGGAC	2 cut(s)	285, 531
FatI	CATG	3 cut(s)	9, 274, 480
FauI	CCCGC	1 cut(s)	262
Fnu4HI	GCNGC	5 cut(s)	30, 92, 132, 303, 549
FokI	GGATG	2 cut(s)	124, 227
Fsp4HI	GCNGC	5 cut(s)	30, 92, 132, 303, 549
FspBI	CTAG	2 cut(s)	123, 713
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	5 cut(s)	30, 92, 132, 303, 549
GsuI	CTGGAG	1 cut(s)	511
HaeIII	GGCC	2 cut(s)	14, 590
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	3 cut(s)	13, 278, 484
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	328
HinfI	GANTC	4 cut(s)	290, 392, 652, 691
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	1 cut(s)	223
Hpy188III	TCNNGA	5 cut(s)	43, 77, 310, 649, 695
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	4 cut(s)	61, 118, 506, 675
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4IV	ACGT	1 cut(s)	707
HpyCH4V	TGCA	7 cut(s)	94, 131, 259, 476, 555, 626, 744
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 20, 29, 623
HpyF3I	CTNAG	4 cut(s)	68, 222, 419, 505
HpySE526I	ACGT	1 cut(s)	707
Hsp92II	CATG	3 cut(s)	13, 278, 484
HspAI	GCGC	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	184, 239
LguI	GCTCTTC	1 cut(s)	359
LmnI	GCTCC	2 cut(s)	110, 614
Lsp1109I	GCAGC	4 cut(s)	78, 143, 289, 560
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	2 cut(s)	123, 713
MaeII	ACGT	1 cut(s)	707
MaeIII	GTNAC	1 cut(s)	708
MalI	GATC	2 cut(s)	186, 241
MboI	GATC	2 cut(s)	184, 239
MboII	GAAGA	4 cut(s)	355, 376, 401, 471
MfeI	CAATTG	1 cut(s)	294
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	619
MlsI	TGGCCA	1 cut(s)	590
MluCI	AATT	4 cut(s)	37, 294, 412, 432
MluNI	TGGCCA	1 cut(s)	590
MlyI	GAGTC	3 cut(s)	299, 401, 685
Mox20I	TGGCCA	1 cut(s)	590
MscI	TGGCCA	1 cut(s)	590
MseI	TTAA	3 cut(s)	374, 408, 677
Msp20I	TGGCCA	1 cut(s)	590
MspA1I	CMGCKG	1 cut(s)	509
MspR9I	CCNGG	1 cut(s)	212
MunI	CAATTG	1 cut(s)	294
Mva1269I	GAATGC	1 cut(s)	476
MvaI	CCWGG	1 cut(s)	212
MvnI	CGCG	1 cut(s)	244
MwoI	GCNNNNNNNGC	4 cut(s)	11, 20, 29, 623
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	2 cut(s)	184, 239
NlaIII	CATG	3 cut(s)	13, 278, 484
NlaIV	GGNNCC	2 cut(s)	186, 519
NmeAIII	GCCGAG	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	708
PciSI	GCTCTTC	1 cut(s)	359
PctI	GAATGC	1 cut(s)	476
PfeI	GAWTC	1 cut(s)	652
PkrI	GCNGC	5 cut(s)	31, 93, 133, 304, 550
PleI	GAGTC	3 cut(s)	298, 400, 685
PpsI	GAGTC	3 cut(s)	298, 400, 685
PpuMI	RGGWCCY	1 cut(s)	518
Psp5II	RGGWCCY	1 cut(s)	518
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	186, 519
PspPI	GGNCC	1 cut(s)	518
PspPPI	RGGWCCY	1 cut(s)	518
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	509
SapI	GCTCTTC	1 cut(s)	359
SaqAI	TTAA	3 cut(s)	374, 408, 677
SatI	GCNGC	5 cut(s)	30, 92, 132, 303, 549
Sau3AI	GATC	2 cut(s)	184, 239
Sau96I	GGNCC	1 cut(s)	518
SchI	GAGTC	3 cut(s)	299, 401, 685
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	619
SfaNI	GCATC	1 cut(s)	205
SinI	GGWCC	1 cut(s)	518
SmlI	CTYRAG	1 cut(s)	752
SmoI	CTYRAG	1 cut(s)	752
SpeI	ACTAGT	1 cut(s)	712
Sse9I	AATT	4 cut(s)	37, 294, 412, 432
SsiI	CCGC	3 cut(s)	30, 269, 639
SspI	AATATT	2 cut(s)	318, 661
SspMI	CTAG	2 cut(s)	123, 713
StyD4I	CCNGG	1 cut(s)	210
StyI	CCWWGG	4 cut(s)	9, 122, 401, 543
TaaI	ACNGT	1 cut(s)	264
TaiI	ACGT	1 cut(s)	710
TaqI	TCGA	2 cut(s)	309, 696
TasI	AATT	4 cut(s)	37, 294, 412, 432
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	652
Tru1I	TTAA	3 cut(s)	374, 408, 677
Tru9I	TTAA	3 cut(s)	374, 408, 677
TscAI	CASTG	2 cut(s)	181, 448
TseFI	GTSAC	1 cut(s)	708
TseI	GCWGC	4 cut(s)	91, 131, 302, 548
Tsp45I	GTSAC	1 cut(s)	708
TspDTI	ATGAA	2 cut(s)	469, 515
TspRI	CASTG	2 cut(s)	181, 448
VpaK11BI	GGWCC	1 cut(s)	518
XapI	RAATTY	2 cut(s)	412, 432
XmaJI	CCTAGG	1 cut(s)	122
XspI	CTAG	2 cut(s)	123, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.