Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0014507

Physical Location & Seq

Genomic Coordinates Reverse (-)

22301112 .. 22303257

Gene Structure 2146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g18630.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCCTCCCTCTCCGTCTCCTTCCCCAATTTCACCACCACTTTCCTCGGCCCCAAACTTAAATTTCTCGAAAATTCGAAGAAGCTGCGAACCTGTTGTTCCGCTGTACGAGCTCCTAGATGTGCTGCTGCTGCTGATACGTCTTATGGAGGTAATGCTCCAAAATTCCCTAGAATCAGTGTTTGGGATCGATATAAACGTCTTGGTGTGACCTATGATGCGTCTGAGGAAGAAATTTGGGGATCGCGCAATTTTCTCTTACAACAGTATGCTGGACATGAAAGAAGCGAAGAATCAATTGAAGCTGCTTTTGAGAAAATCCTGATGACCAGCTTCTGGCAGAGGAAGAAAACAAAAATTAATTTGAAGAGCAAGTTAAAAAAGAAAGTTGAAGAGTCTCCGCCATGGGTTAAGAACTTGCTCAATTTTGTGGAAGTTCCACCTGTTGAAGTTATCTTTAGAAGATTGTTCCTCTTTGCGTTCATGGGTGGCTGGAGTATCATGAACTCAGCTGAAGGTGGACCTGCATTTCAGGTGGCGGTATCCCTGGCAGCTTGCATCTATTTCCTCAACGAGAAGACAAAGAGCTTGGCCAGAGCTTCCATTTTTGGACTTGGAGCTCTCGTCACTGGTTGGGTATGCGGTTCGGTTTTGGTCCCGAATATTCCATCAATGCTGTTACACCCGACTTGGACCCTTGAACTTGCAACCTCACTCGTAGTTTATCTGTTCTTGTTTCTTGCTTGTACCTTTCTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006457 GO:0006996 GO:0007275 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009639 GO:0009640 GO:0009657 GO:0009658 GO:0009704 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033157 GO:0034357 GO:0034762 GO:0034764 GO:0042170 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048518 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0055035 GO:0060341 GO:0061077 GO:0061458 GO:0065007 GO:0070201 GO:0071840 GO:0090087 GO:0090316 GO:1903533 GO:1903827 GO:1903829 GO:1904215 GO:1904216 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CPP1-like

Protein Analysis

254

Amino Acids

28.36

Weight (kDa)

9.53

Isoelectric Point (pI)

40.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23040 AT5G23040
fragaria_vesca	FvH4_5g12961
malus_domestica	MD06G1208500.v1.1 MD14G1218800.v1.1
prunus_persica	Prupe.5G213000_v2.0.a1
pyrus_communis	pycom06g18630
rosa_chinensis	RchiOBHm_Chr7g0184201
rosa_laevigata	RLG00000004994
rosa_multiflora	Rmu_co8396789.1_g000001 Rmu_sc0012221.1_g000008
rosa_rugosa	Rorug06G0463800
rosa_samantha	Rh7AG082000 Rh7BG065200 Rh7CG065600 Rh7DG065300
rosa_wichuraiana	Rw7G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	532
AccB7I	CCANNNNNTGG	1 cut(s)	336
AccII	CGCG	1 cut(s)	247
AciI	CCGC	4 cut(s)	102, 401, 539, 642
AclWI	GGATC	2 cut(s)	195, 250
AcoI	YGGCCR	1 cut(s)	591
AcsI	RAATTY	4 cut(s)	62, 73, 164, 234
AcuI	CTGAAG	1 cut(s)	534
AfaI	GTAC	2 cut(s)	108, 748
AfiI	CCNNNNNNNGG	1 cut(s)	336
AgsI	TTSAA	5 cut(s)	302, 367, 392, 449, 701
AjnI	CCWGG	1 cut(s)	546
AjuI	GAANNNNNNNTTGG	2 cut(s)	166, 198
AluBI	AGCT	9 cut(s)	85, 113, 305, 333, 512, 554, 588, 599, 620
AluI	AGCT	9 cut(s)	85, 113, 305, 333, 512, 554, 588, 599, 620
Alw21I	GWGCWC	2 cut(s)	115, 622
Alw26I	GTCTC	2 cut(s)	22, 402
AlwI	GGATC	2 cut(s)	195, 250
AlwNI	CAGNNNCTG	1 cut(s)	336
AoxI	GGCC	3 cut(s)	3, 49, 591
ApeKI	GCWGC	6 cut(s)	85, 125, 128, 131, 305, 551
ApoI	RAATTY	4 cut(s)	62, 73, 164, 234
AseI	ATTAAT	1 cut(s)	360
AspLEI	GCGC	1 cut(s)	249
AspS9I	GGNCC	4 cut(s)	50, 521, 655, 693
AsuHPI	GGTGA	1 cut(s)	25
AsuII	TTCGAA	1 cut(s)	77
AvaII	GGWCC	3 cut(s)	521, 655, 693
BalI	TGGCCA	1 cut(s)	593
BanII	GRGCYC	2 cut(s)	115, 622
BbsI	GAAGAC	1 cut(s)	584
Bbv12I	GWGCWC	2 cut(s)	115, 622
BbvI	GCAGC	6 cut(s)	72, 112, 115, 118, 292, 563
BccI	CCATC	1 cut(s)	676
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BciT130I	CCWGG	1 cut(s)	548
BciVI	GTATCC	1 cut(s)	553
BcoDI	GTCTC	2 cut(s)	22, 402
BfaI	CTAG	2 cut(s)	117, 171
BfuAI	ACCTGC	1 cut(s)	532
BfuI	GTATCC	1 cut(s)	553
BisI	GCNGC	6 cut(s)	86, 126, 129, 132, 306, 552
BlsI	GCNGC	6 cut(s)	87, 127, 130, 133, 307, 553
Bme1390I	CCNGG	1 cut(s)	548
Bme18I	GGWCC	3 cut(s)	521, 655, 693
BmgT120I	GGNCC	4 cut(s)	50, 521, 655, 693
BmiI	GGNNCC	3 cut(s)	52, 657, 695
BmrFI	CCNGG	1 cut(s)	548
BmsI	GCATC	2 cut(s)	208, 567
BpiI	GAAGAC	1 cut(s)	584
BpmI	CTGGAG	1 cut(s)	514
Bpu14I	TTCGAA	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	740
Bsa29I	ATCGAT	1 cut(s)	190
BsaJI	CCNNGG	3 cut(s)	46, 404, 546
BsaXI	ACNNNNNCTCC	2 cut(s)	609, 639
Bsc4I	CCNNNNNNNGG	1 cut(s)	336
Bse1I	ACTGG	1 cut(s)	634
BseBI	CCWGG	1 cut(s)	548
BseCI	ATCGAT	1 cut(s)	190
BseDI	CCNNGG	3 cut(s)	46, 404, 546
BseLI	CCNNNNNNNGG	1 cut(s)	336
BseMII	CTCAG	2 cut(s)	216, 522
BseNI	ACTGG	1 cut(s)	634
BseXI	GCAGC	6 cut(s)	72, 112, 115, 118, 292, 563
Bsh1236I	CGCG	1 cut(s)	247
BshFI	GGCC	3 cut(s)	5, 51, 593
BshVI	ATCGAT	1 cut(s)	190
BsiHKAI	GWGCWC	2 cut(s)	115, 622
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	1 cut(s)	336
BsmAI	GTCTC	2 cut(s)	22, 402
BsmBI	CGTCTC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	641
BsnI	GGCC	3 cut(s)	5, 51, 593
Bsp119I	TTCGAA	1 cut(s)	77
Bsp1286I	GDGCHC	2 cut(s)	115, 622
Bsp143I	GATC	2 cut(s)	187, 242
Bsp19I	CCATGG	1 cut(s)	404
BspACI	CCGC	4 cut(s)	102, 401, 539, 642
BspANI	GGCC	3 cut(s)	5, 51, 593
BspCNI	CTCAG	2 cut(s)	217, 521
BspDI	ATCGAT	1 cut(s)	190
BspFNI	CGCG	1 cut(s)	247
BspHI	TCATGA	1 cut(s)	501
BspLI	GGNNCC	3 cut(s)	52, 657, 695
BspMI	ACCTGC	1 cut(s)	532
BspPI	GGATC	2 cut(s)	195, 250
BspQI	GCTCTTC	1 cut(s)	362
BspT104I	TTCGAA	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	634
BssECI	CCNNGG	3 cut(s)	46, 404, 546
BssMI	GATC	2 cut(s)	187, 242
BssT1I	CCWWGG	1 cut(s)	404
Bst2UI	CCWGG	1 cut(s)	548
Bst4CI	ACNGT	1 cut(s)	267
Bst6I	CTCTTC	2 cut(s)	362, 387
BstBI	TTCGAA	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	556
BstDEI	CTNAG	2 cut(s)	225, 508
BstDSI	CCRYGG	1 cut(s)	404
BstFNI	CGCG	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	2 cut(s)	190, 245
BstMAI	GTCTC	2 cut(s)	22, 402
BstMBI	GATC	2 cut(s)	187, 242
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 131
BstNI	CCWGG	1 cut(s)	548
BstSCI	CCNGG	1 cut(s)	546
BstUI	CGCG	1 cut(s)	247
BstV1I	GCAGC	6 cut(s)	72, 112, 115, 118, 292, 563
BstV2I	GAAGAC	1 cut(s)	584
Bsu15I	ATCGAT	1 cut(s)	190
BsuI	GTATCC	1 cut(s)	553
BsuRI	GGCC	3 cut(s)	5, 51, 593
BsuTUI	ATCGAT	1 cut(s)	190
BtgI	CCRYGG	1 cut(s)	404
BtsIMutI	CAGTG	2 cut(s)	184, 627
BveI	ACCTGC	1 cut(s)	532
Cac8I	GCNNGC	1 cut(s)	556
CaiI	CAGNNNCTG	1 cut(s)	336
CciI	TCATGA	1 cut(s)	501
CfoI	GCGC	1 cut(s)	249
Cfr13I	GGNCC	4 cut(s)	50, 521, 655, 693
ClaI	ATCGAT	1 cut(s)	190
CseI	GACGC	1 cut(s)	210
Csp6I	GTAC	2 cut(s)	107, 747
CviAII	CATG	4 cut(s)	278, 405, 484, 502
CviQI	GTAC	2 cut(s)	107, 747
DdeI	CTNAG	2 cut(s)	225, 508
DpnI	GATC	2 cut(s)	189, 244
DpnII	GATC	2 cut(s)	187, 242
EaeI	YGGCCR	1 cut(s)	591
Eam1104I	CTCTTC	2 cut(s)	362, 387
EarI	CTCTTC	2 cut(s)	362, 387
EciI	GGCGGA	1 cut(s)	390
Ecl136II	GAGCTC	2 cut(s)	113, 620
Eco130I	CCWWGG	1 cut(s)	404
Eco24I	GRGCYC	2 cut(s)	115, 622
Eco47I	GGWCC	3 cut(s)	521, 655, 693
Eco53kI	GAGCTC	2 cut(s)	113, 620
Eco57I	CTGAAG	1 cut(s)	534
EcoICRI	GAGCTC	2 cut(s)	113, 620
EcoRII	CCWGG	1 cut(s)	546
EcoT14I	CCWWGG	1 cut(s)	404
EcoT38I	GRGCYC	2 cut(s)	115, 622
ErhI	CCWWGG	1 cut(s)	404
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	4 cut(s)	281, 408, 487, 505
FaiI	YATR	9 cut(s)	147, 195, 216, 270, 279, 406, 485, 503, 640
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	4 cut(s)	277, 404, 483, 501
Fnu4HI	GCNGC	6 cut(s)	86, 126, 129, 132, 306, 552
FriOI	GRGCYC	2 cut(s)	115, 622
Fsp4HI	GCNGC	6 cut(s)	86, 126, 129, 132, 306, 552
FspBI	CTAG	2 cut(s)	117, 171
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	6 cut(s)	86, 126, 129, 132, 306, 552
GsuI	CTGGAG	1 cut(s)	514
HaeIII	GGCC	3 cut(s)	5, 51, 593
HgaI	GACGC	1 cut(s)	210
HhaI	GCGC	1 cut(s)	249
Hin1II	CATG	4 cut(s)	281, 408, 487, 505
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HinfI	GANTC	3 cut(s)	174, 293, 395
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	521
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	4 cut(s)	68, 322, 502, 658
Hpy8I	GTNNAC	1 cut(s)	521
HpyAV	CCTTC	2 cut(s)	31, 509
HpyCH4III	ACNGT	1 cut(s)	267
HpyCH4IV	ACGT	2 cut(s)	140, 199
HpyCH4V	TGCA	3 cut(s)	527, 558, 707
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 131
HpyF3I	CTNAG	2 cut(s)	225, 508
HpySE526I	ACGT	2 cut(s)	140, 199
Hsp92II	CATG	4 cut(s)	281, 408, 487, 505
HspAI	GCGC	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	187, 242
LguI	GCTCTTC	1 cut(s)	362
LmnI	GCTCC	3 cut(s)	118, 163, 617
Lsp1109I	GCAGC	6 cut(s)	72, 112, 115, 118, 292, 563
LweI	GCATC	2 cut(s)	208, 567
MaeI	CTAG	2 cut(s)	117, 171
MaeII	ACGT	2 cut(s)	140, 199
MaeIII	GTNAC	3 cut(s)	208, 625, 678
MalI	GATC	2 cut(s)	189, 244
MboI	GATC	2 cut(s)	187, 242
MboII	GAAGA	8 cut(s)	91, 242, 302, 358, 379, 404, 474, 589
MfeI	CAATTG	1 cut(s)	297
MhlI	GDGCHC	2 cut(s)	115, 622
MlsI	TGGCCA	1 cut(s)	593
MluNI	TGGCCA	1 cut(s)	593
MlyI	GAGTC	1 cut(s)	404
MnlI	CCTC	9 cut(s)	16, 20, 56, 143, 220, 336, 482, 578, 721
Mox20I	TGGCCA	1 cut(s)	593
MscI	TGGCCA	1 cut(s)	593
MseI	TTAA	4 cut(s)	60, 360, 377, 411
Msp20I	TGGCCA	1 cut(s)	593
MspA1I	CMGCKG	2 cut(s)	104, 512
MspR9I	CCNGG	1 cut(s)	548
MunI	CAATTG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	548
MvnI	CGCG	1 cut(s)	247
MwoI	GCNNNNNNNGC	2 cut(s)	110, 131
NcoI	CCATGG	1 cut(s)	404
NdeII	GATC	2 cut(s)	187, 242
NlaIII	CATG	4 cut(s)	281, 408, 487, 505
NlaIV	GGNNCC	3 cut(s)	52, 657, 695
NmeAIII	GCCGAG	1 cut(s)	27
NmuCI	GTSAC	2 cut(s)	208, 625
NspV	TTCGAA	1 cut(s)	77
PagI	TCATGA	1 cut(s)	501
PciSI	GCTCTTC	1 cut(s)	362
PcsI	WCGNNNNNNNCGW	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	174, 293
PflMI	CCANNNNNTGG	1 cut(s)	336
PkrI	GCNGC	6 cut(s)	87, 127, 130, 133, 307, 553
PleI	GAGTC	1 cut(s)	403
PpsI	GAGTC	1 cut(s)	403
PshBI	ATTAAT	1 cut(s)	360
Psp124BI	GAGCTC	2 cut(s)	115, 622
Psp6I	CCWGG	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	546
PspN4I	GGNNCC	3 cut(s)	52, 657, 695
PspPI	GGNCC	4 cut(s)	50, 521, 655, 693
PstNI	CAGNNNCTG	1 cut(s)	336
PvuII	CAGCTG	1 cut(s)	512
RsaI	GTAC	2 cut(s)	108, 748
RsaNI	GTAC	2 cut(s)	107, 747
SacI	GAGCTC	2 cut(s)	115, 622
SapI	GCTCTTC	1 cut(s)	362
SaqAI	TTAA	4 cut(s)	60, 360, 377, 411
SatI	GCNGC	6 cut(s)	86, 126, 129, 132, 306, 552
Sau3AI	GATC	2 cut(s)	187, 242
Sau96I	GGNCC	4 cut(s)	50, 521, 655, 693
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	1 cut(s)	548
SduI	GDGCHC	2 cut(s)	115, 622
SfaNI	GCATC	2 cut(s)	208, 567
SfuI	TTCGAA	1 cut(s)	77
SinI	GGWCC	3 cut(s)	521, 655, 693
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
SsiI	CCGC	4 cut(s)	102, 401, 539, 642
SspI	AATATT	1 cut(s)	664
SspMI	CTAG	2 cut(s)	117, 171
SstI	GAGCTC	2 cut(s)	115, 622
StyD4I	CCNGG	1 cut(s)	546
StyI	CCWWGG	1 cut(s)	404
TaaI	ACNGT	1 cut(s)	267
TaiI	ACGT	2 cut(s)	143, 202
TaqI	TCGA	3 cut(s)	69, 77, 190
TfiI	GAWTC	2 cut(s)	174, 293
Tru1I	TTAA	4 cut(s)	60, 360, 377, 411
Tru9I	TTAA	4 cut(s)	60, 360, 377, 411
TscAI	CASTG	2 cut(s)	184, 634
TseFI	GTSAC	2 cut(s)	208, 625
TseI	GCWGC	6 cut(s)	85, 125, 128, 131, 305, 551
Tsp45I	GTSAC	2 cut(s)	208, 625
TspDTI	ATGAA	3 cut(s)	294, 472, 518
TspGWI	ACGGA	1 cut(s)	4
TspRI	CASTG	2 cut(s)	184, 634
Van91I	CCANNNNNTGG	1 cut(s)	336
VpaK11BI	GGWCC	3 cut(s)	521, 655, 693
VspI	ATTAAT	1 cut(s)	360
XapI	RAATTY	4 cut(s)	62, 73, 164, 234
XspI	CTAG	2 cut(s)	117, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.