Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0014507

Physical Location & Seq

Genomic Coordinates Forward (+)

5880465 .. 5882763

Gene Structure 2299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG082000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCCTCTCTCTCCATAGCTGCGCCCAATTTCACCACCTCTTTCATCGGCAAAAAAATTACTTTTCGTGAAAATACCAAGCGGCAAAACTGTTGCTTCTTTCGGCGAAGCCCTAGATGTGCAGCTCTATCCTACGGAGGTAATGCTCCGAAGTTTCCCCGGGTCAGTGTTTGGGATCCCTATAAGCGTCTTGGTGTGAACCAAGATGCTTCTGAGGAGGAGATATGGGGATCGCGCAACTTTCTCTTGCAACAGTATGCTGGACATGAGAGAAGTGAAGAGTCAATTGAAGCTGCTTTTGAGAAAATATTGATGACAAGCTTCCAGCAGAGGAAGAAAACAAAAATCAACTTGAAGAGCAGGTTAAAGAAGAAAGTAGAAGAGTCTCCACCTTGGGTTAAGAATTTGCTTAATTTCGTGGAACTTCCAGCGACTGAAGTTATTTTTAGAAGATTGTTCCTCTTTGCATTCATGGGTGGCTGGAGTATTATGAACTCAGCGGAAGGTGGACCTGCTTTTCAGGTGGCAGTGTCCTTGGCAGCTTGCATATATTTCCTCAACGAGAAGACAAAGAGCTTGGCTAGAGCTTCCATTTATGGACTTGGAGCACTTGTTACTGGTTGGGTGTGTGGTTCGATTTTGGTCCCAAATATTCCGTCAATGCTATTAAACCCGACGTGGACTCTCGAACTTCTAACATCACTAGTAGTTTATGTGTTCTTGTTCCTTGCTTGCACTTTTCTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006457 GO:0006996 GO:0007275 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009639 GO:0009640 GO:0009657 GO:0009658 GO:0009704 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0019866 GO:0022414 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0033157 GO:0034357 GO:0034762 GO:0034764 GO:0042170 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048518 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0055035 GO:0060341 GO:0061077 GO:0061458 GO:0065007 GO:0070201 GO:0071840 GO:0090087 GO:0090316 GO:1903533 GO:1903827 GO:1903829 GO:1904215 GO:1904216 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CPP1-like

Protein Analysis

249

Amino Acids

28.09

Weight (kDa)

9.65

Isoelectric Point (pI)

50.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPP1-like	PF11833	68 - 248	1.1e-60	Protein CHAPERONE-LIKE PROTEIN OF POR1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23040 AT5G23040
fragaria_vesca	FvH4_5g12961
malus_domestica	MD06G1208500.v1.1 MD14G1218800.v1.1
prunus_persica	Prupe.5G213000_v2.0.a1
pyrus_communis	pycom06g18630
rosa_chinensis	RchiOBHm_Chr7g0184201
rosa_laevigata	RLG00000004994
rosa_multiflora	Rmu_co8396789.1_g000001 Rmu_sc0012221.1_g000008
rosa_rugosa	Rorug06G0463800
rosa_samantha	Rh7AG082000 Rh7BG065200 Rh7CG065600 Rh7DG065300
rosa_wichuraiana	Rw7G005350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	351, 520
AccII	CGCG	1 cut(s)	235
AciI	CCGC	2 cut(s)	82, 500
AclWI	GGATC	3 cut(s)	170, 183, 238
AcsI	RAATTY	1 cut(s)	403
AcuI	CTGAAG	1 cut(s)	456
AgsI	TTSAA	2 cut(s)	290, 355
AhlI	ACTAGT	1 cut(s)	703
AjiI	CACGTC	1 cut(s)	678
AluBI	AGCT	7 cut(s)	20, 125, 293, 321, 542, 576, 587
AluI	AGCT	7 cut(s)	20, 125, 293, 321, 542, 576, 587
Alw21I	GWGCWC	1 cut(s)	610
Alw26I	GTCTC	1 cut(s)	390
AlwI	GGATC	3 cut(s)	170, 183, 238
AlwNI	CAGNNNCTG	1 cut(s)	434
Ama87I	CYCGRG	1 cut(s)	159
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	20, 122, 293, 539
ApoI	RAATTY	1 cut(s)	403
ArsI	GACNNNNNNTTYG	2 cut(s)	641, 673
AspLEI	GCGC	2 cut(s)	25, 237
AspS9I	GGNCC	2 cut(s)	509, 643
AsuC2I	CCSGG	2 cut(s)	160, 161
AsuHPI	GGTGA	1 cut(s)	25
AvaI	CYCGRG	1 cut(s)	159
AvaII	GGWCC	2 cut(s)	509, 643
BamHI	GGATCC	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	572
Bbv12I	GWGCWC	1 cut(s)	610
BbvI	GCAGC	4 cut(s)	7, 134, 280, 551
BcnI	CCSGG	2 cut(s)	160, 161
BcoDI	GTCTC	1 cut(s)	390
BcuI	ACTAGT	1 cut(s)	703
BfaI	CTAG	3 cut(s)	114, 582, 704
BfuAI	ACCTGC	2 cut(s)	351, 520
BisI	GCNGC	5 cut(s)	21, 83, 123, 294, 540
BlsI	GCNGC	5 cut(s)	22, 84, 124, 295, 541
Bme1390I	CCNGG	2 cut(s)	160, 161
Bme18I	GGWCC	2 cut(s)	509, 643
BmeT110I	CYCGRG	1 cut(s)	159
BmgBI	CACGTC	1 cut(s)	678
BmgT120I	GGNCC	2 cut(s)	509, 643
BmiI	GGNNCC	2 cut(s)	177, 645
BmrFI	CCNGG	2 cut(s)	160, 161
BmsI	GCATC	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	572
BpmI	CTGGAG	1 cut(s)	502
BpuEI	CTTGAG	1 cut(s)	728
BpuMI	CCSGG	2 cut(s)	160, 161
BsaJI	CCNNGG	4 cut(s)	158, 159, 392, 534
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bse1I	ACTGG	1 cut(s)	622
BseDI	CCNNGG	4 cut(s)	158, 159, 392, 534
BseMII	CTCAG	2 cut(s)	204, 510
BseNI	ACTGG	1 cut(s)	622
BseRI	GAGGAG	2 cut(s)	230, 233
BseXI	GCAGC	4 cut(s)	7, 134, 280, 551
BsgI	GTGCAG	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	610
BsiHKCI	CYCGRG	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	160
BslFI	GGGAC	1 cut(s)	629
BsmAI	GTCTC	1 cut(s)	390
BsmFI	GGGAC	1 cut(s)	629
BsmI	GAATGC	1 cut(s)	467
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	610
Bsp143I	GATC	2 cut(s)	175, 230
BspACI	CCGC	2 cut(s)	82, 500
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	205, 509
BspFNI	CGCG	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	177, 645
BspMI	ACCTGC	2 cut(s)	351, 520
BspPI	GGATC	3 cut(s)	170, 183, 238
BspQI	GCTCTTC	1 cut(s)	350
BsrI	ACTGG	1 cut(s)	622
BssECI	CCNNGG	4 cut(s)	158, 159, 392, 534
BssMI	GATC	2 cut(s)	175, 230
BssT1I	CCWWGG	2 cut(s)	392, 534
Bst4CI	ACNGT	2 cut(s)	92, 255
Bst6I	CTCTTC	3 cut(s)	273, 350, 375
BstC8I	GCNNGC	2 cut(s)	544, 733
BstDEI	CTNAG	2 cut(s)	213, 496
BstFNI	CGCG	1 cut(s)	235
BstHHI	GCGC	2 cut(s)	25, 237
BstKTI	GATC	2 cut(s)	178, 233
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	2 cut(s)	175, 230
BstSCI	CCNGG	2 cut(s)	158, 159
BstUI	CGCG	1 cut(s)	235
BstV1I	GCAGC	4 cut(s)	7, 134, 280, 551
BstV2I	GAAGAC	1 cut(s)	572
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	1 cut(s)	678
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	2 cut(s)	172, 534
BveI	ACCTGC	2 cut(s)	351, 520
Cac8I	GCNNGC	2 cut(s)	544, 733
CaiI	CAGNNNCTG	1 cut(s)	434
CfoI	GCGC	2 cut(s)	25, 237
Cfr13I	GGNCC	2 cut(s)	509, 643
Cfr9I	CCCGGG	1 cut(s)	159
CseI	GACGC	1 cut(s)	176
CviAII	CATG	2 cut(s)	266, 472
DdeI	CTNAG	2 cut(s)	213, 496
DpnI	GATC	2 cut(s)	177, 232
DpnII	GATC	2 cut(s)	175, 230
Eam1104I	CTCTTC	3 cut(s)	273, 350, 375
EarI	CTCTTC	3 cut(s)	273, 350, 375
Eco130I	CCWWGG	2 cut(s)	392, 534
Eco47I	GGWCC	2 cut(s)	509, 643
Eco57I	CTGAAG	1 cut(s)	456
Eco88I	CYCGRG	1 cut(s)	159
EcoT14I	CCWWGG	2 cut(s)	392, 534
ErhI	CCWWGG	2 cut(s)	392, 534
FaeI	CATG	2 cut(s)	269, 475
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	2 cut(s)	265, 471
Fnu4HI	GCNGC	5 cut(s)	21, 83, 123, 294, 540
Fsp4HI	GCNGC	5 cut(s)	21, 83, 123, 294, 540
FspBI	CTAG	3 cut(s)	114, 582, 704
GlaI	GCGC	2 cut(s)	24, 236
GluI	GCNGC	5 cut(s)	21, 83, 123, 294, 540
GsuI	CTGGAG	1 cut(s)	502
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	160
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	2 cut(s)	25, 237
Hin1II	CATG	2 cut(s)	269, 475
Hin6I	GCGC	2 cut(s)	23, 235
HinP1I	GCGC	2 cut(s)	23, 235
HindIII	AAGCTT	1 cut(s)	319
HinfI	GANTC	3 cut(s)	281, 383, 682
HpaII	CCGG	1 cut(s)	160
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	3 cut(s)	199, 509, 681
Hpy188I	TCNGA	2 cut(s)	150, 214
Hpy188III	TCNNGA	2 cut(s)	68, 686
Hpy8I	GTNNAC	3 cut(s)	199, 509, 681
Hpy99I	CGWCG	1 cut(s)	679
HpyAV	CCTTC	1 cut(s)	497
HpyCH4III	ACNGT	2 cut(s)	92, 255
HpyCH4IV	ACGT	1 cut(s)	677
HpyCH4V	TGCA	5 cut(s)	122, 250, 467, 546, 735
HpyF3I	CTNAG	2 cut(s)	213, 496
HpySE526I	ACGT	1 cut(s)	677
Hsp92II	CATG	2 cut(s)	269, 475
HspAI	GCGC	2 cut(s)	23, 235
Kzo9I	GATC	2 cut(s)	175, 230
LguI	GCTCTTC	1 cut(s)	350
LmnI	GCTCC	2 cut(s)	151, 605
LpnPI	CCDG	9 cut(s)	173, 246, 338, 346, 441, 466, 506, 525, 603
Lsp1109I	GCAGC	4 cut(s)	7, 134, 280, 551
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	3 cut(s)	114, 582, 704
MaeII	ACGT	1 cut(s)	677
MaeIII	GTNAC	1 cut(s)	613
MalI	GATC	2 cut(s)	177, 232
MboI	GATC	2 cut(s)	175, 230
MboII	GAAGA	7 cut(s)	290, 346, 367, 382, 392, 462, 577
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	610
MluCI	AATT	5 cut(s)	28, 57, 285, 403, 412
MlyI	GAGTC	3 cut(s)	290, 392, 676
MnlI	CCTC	8 cut(s)	16, 49, 131, 208, 211, 324, 470, 566
MseI	TTAA	4 cut(s)	365, 399, 411, 668
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	2 cut(s)	160, 161
MunI	CAATTG	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	467
MvnI	CGCG	1 cut(s)	235
NciI	CCSGG	2 cut(s)	160, 161
NdeII	GATC	2 cut(s)	175, 230
NlaIII	CATG	2 cut(s)	269, 475
NlaIV	GGNNCC	2 cut(s)	177, 645
PciSI	GCTCTTC	1 cut(s)	350
PctI	GAATGC	1 cut(s)	467
PkrI	GCNGC	5 cut(s)	22, 84, 124, 295, 541
PleI	GAGTC	3 cut(s)	289, 391, 676
PpsI	GAGTC	3 cut(s)	289, 391, 676
PspN4I	GGNNCC	2 cut(s)	177, 645
PspPI	GGNCC	2 cut(s)	509, 643
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	175
SapI	GCTCTTC	1 cut(s)	350
SaqAI	TTAA	4 cut(s)	365, 399, 411, 668
SatI	GCNGC	5 cut(s)	21, 83, 123, 294, 540
Sau3AI	GATC	2 cut(s)	175, 230
Sau96I	GGNCC	2 cut(s)	509, 643
SchI	GAGTC	3 cut(s)	290, 392, 676
ScrFI	CCNGG	2 cut(s)	160, 161
SduI	GDGCHC	1 cut(s)	610
SfaNI	GCATC	1 cut(s)	196
SinI	GGWCC	2 cut(s)	509, 643
SmaI	CCCGGG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	743
SmoI	CTYRAG	1 cut(s)	743
SpeI	ACTAGT	1 cut(s)	703
Sse9I	AATT	5 cut(s)	28, 57, 285, 403, 412
SsiI	CCGC	2 cut(s)	82, 500
SspI	AATATT	2 cut(s)	309, 652
SspMI	CTAG	3 cut(s)	114, 582, 704
StyD4I	CCNGG	2 cut(s)	158, 159
StyI	CCWWGG	2 cut(s)	392, 534
TaaI	ACNGT	2 cut(s)	92, 255
TaiI	ACGT	1 cut(s)	680
TaqI	TCGA	2 cut(s)	635, 687
TasI	AATT	5 cut(s)	28, 57, 285, 403, 412
TauI	GCSGC	1 cut(s)	85
Tru1I	TTAA	4 cut(s)	365, 399, 411, 668
Tru9I	TTAA	4 cut(s)	365, 399, 411, 668
TscAI	CASTG	2 cut(s)	172, 534
TseI	GCWGC	4 cut(s)	20, 122, 293, 539
TspDTI	ATGAA	3 cut(s)	34, 460, 506
TspGWI	ACGGA	2 cut(s)	150, 645
TspMI	CCCGGG	1 cut(s)	159
TspRI	CASTG	2 cut(s)	172, 534
VpaK11BI	GGWCC	2 cut(s)	509, 643
XapI	RAATTY	1 cut(s)	403
XmaI	CCCGGG	1 cut(s)	159
XspI	CTAG	3 cut(s)	114, 582, 704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.