Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012775

Physical Location & Seq

Genomic Coordinates Forward (+)

7850444 .. 7852534

Gene Structure 2091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAGTTCTTGTGTTGTGACGACAAGCTGTTTCTATACAATTTCAGATTCTAGTATACGTTTGAAATCCCCCAAGCTCCTCAATCTGAGTAACCAGCAGAGAAGACGCTCTCTTAGGTCTCGAGGTGGTTTAAAGGTTGAAGCTTACTACGGTCTAAAGACACCTCCTTATCCACTTGATGCTTTGGAGCCGTATATGAGTAGAAGAACACTAGAAGTGCATTGGGGAAAACACCATCGAGGTTATGTAGATAATCTGAATAAACAGTTAGGGAAAGATGATAGACTCTATGGATACACCATGGAAGAGCTTATCAAGGCTACATACAACAACGGGAATCCTTTACCCGAGTTCAACAACGCTGCACAGGTCTATAACCATGATTTCTTCTGGGAGTCGATGCAACCTGGTGGTGGAGACACGCCTCAAAAGGGTGTTCTTGAGCAGATTGATAAGGATTTTGGTTCTTTCACAAATTTTAGAGAAAAGTTCACTAATGCAGCTCTTACTCAGTTTGGTTCTGGATGGGTCTGGCTTGTCTTAAAGAGGGAAGAGAGAAGGCTTGAGGTGGTCAAAACCTCAAACGCCATTAACCCACTCGTGTGGGACGATATTCCAATCATCTGCGTGGATGTGTGGGAGCACTCTTATTATCTGGACTACAAGAACGACAGGGCTAAGTATATAAACACATTTCTGAACCACTTGGTGTCGTGGAACGCTGCCATGAGTCGGATGGCCCGTGCAGAAGCGTTTGTGAATCTTGGTGAACCCAACATCCCAATCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

263

Amino Acids

30.36

Weight (kDa)

8.62

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	50 - 134	2.1e-19	Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C	PF02777	143 - 244	5.8e-37	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23310
fragaria_vesca	FvH4_4g37110 FvH4_4g37110
malus_domestica	MD00G1043500.v1.1 MD13G1005800.v1.1 MD16G1002100.v1.1
prunus_persica	Prupe.1G347200_v2.0.a1 Prupe.1G347200_v2.0.a1
pyrus_communis	pycom13g00480 pycom16g00360
rosa_chinensis	RchiOBHm_Chr4g0446901
rosa_roxburghii	Rroxscaffold_5G00387240
rosa_rugosa	Rorug04G0375800
rosa_samantha	Rh4AG437000 Rh4BG446200 Rh4CG463500 Rh4DG444800
rosa_wichuraiana	Rw4G037390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	475
AdeI	CACNNNGTG	1 cut(s)	709
AfiI	CCNNNNNNNGG	3 cut(s)	413, 431, 732
AgsI	TTSAA	3 cut(s)	64, 140, 355
AjnI	CCWGG	1 cut(s)	406
AleI	CACNNNNGTG	1 cut(s)	601
AloI	GAACNNNNNNTCC	1 cut(s)	762
AluBI	AGCT	5 cut(s)	27, 76, 143, 310, 503
AluI	AGCT	5 cut(s)	27, 76, 143, 310, 503
Alw21I	GWGCWC	1 cut(s)	645
Alw26I	GTCTC	2 cut(s)	123, 411
Ama87I	CYCGRG	2 cut(s)	120, 347
AoxI	GGCC	1 cut(s)	738
ApeKI	GCWGC	3 cut(s)	362, 500, 722
ApoI	RAATTY	1 cut(s)	475
AspS9I	GGNCC	1 cut(s)	739
AsuHPI	GGTGA	1 cut(s)	779
AvaI	CYCGRG	2 cut(s)	120, 347
BauI	CACGAG	1 cut(s)	599
BbsI	GAAGAC	1 cut(s)	109
Bbv12I	GWGCWC	1 cut(s)	645
BbvI	GCAGC	3 cut(s)	349, 512, 709
BccI	CCATC	3 cut(s)	243, 519, 730
BceAI	ACGGC	1 cut(s)	175
BciT130I	CCWGG	1 cut(s)	408
BciVI	GTATCC	1 cut(s)	287
BcoDI	GTCTC	2 cut(s)	123, 411
BfaI	CTAG	2 cut(s)	51, 212
BfuI	GTATCC	1 cut(s)	287
BisI	GCNGC	3 cut(s)	363, 501, 723
BlsI	GCNGC	3 cut(s)	364, 502, 724
Bme1390I	CCNGG	1 cut(s)	408
BmeT110I	CYCGRG	2 cut(s)	120, 347
BmgT120I	GGNCC	1 cut(s)	739
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	408
BmsI	GCATC	2 cut(s)	169, 390
BpiI	GAAGAC	1 cut(s)	109
BpuEI	CTTGAG	2 cut(s)	461, 584
BsaI	GGTCTC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	3 cut(s)	413, 431, 732
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	4 cut(s)	530, 637, 741, 777
BseLI	CCNNNNNNNGG	3 cut(s)	413, 431, 732
BseMII	CTCAG	2 cut(s)	77, 524
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	3 cut(s)	349, 512, 709
BsgI	GTGCAG	2 cut(s)	348, 765
BshFI	GGCC	1 cut(s)	740
BsiHKAI	GWGCWC	1 cut(s)	645
BsiHKCI	CYCGRG	2 cut(s)	120, 347
BslFI	GGGAC	1 cut(s)	620
BslI	CCNNNNNNNGG	3 cut(s)	413, 431, 732
BsmAI	GTCTC	2 cut(s)	123, 411
BsmFI	GGGAC	1 cut(s)	620
BsnI	GGCC	1 cut(s)	740
Bso31I	GGTCTC	1 cut(s)	123
BsoBI	CYCGRG	2 cut(s)	120, 347
Bsp1286I	GDGCHC	1 cut(s)	645
Bsp19I	CCATGG	1 cut(s)	300
BspANI	GGCC	1 cut(s)	740
BspCNI	CTCAG	2 cut(s)	78, 523
BspLI	GGNNCC	1 cut(s)	189
BspQI	GCTCTTC	1 cut(s)	300
BspTNI	GGTCTC	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	300
BssNAI	GTATAC	1 cut(s)	56
BssSI	CACGAG	1 cut(s)	599
BssT1I	CCWWGG	1 cut(s)	300
Bst1107I	GTATAC	1 cut(s)	56
Bst2BI	CACGAG	1 cut(s)	599
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	2 cut(s)	152, 267
Bst6I	CTCTTC	2 cut(s)	300, 546
BstDEI	CTNAG	4 cut(s)	86, 113, 510, 678
BstDSI	CCRYGG	1 cut(s)	300
BstF5I	GGATG	4 cut(s)	530, 637, 741, 777
BstMAI	GTCTC	2 cut(s)	123, 411
BstNI	CCWGG	1 cut(s)	408
BstSCI	CCNGG	1 cut(s)	406
BstV1I	GCAGC	3 cut(s)	349, 512, 709
BstV2I	GAAGAC	1 cut(s)	109
BstXI	CCANNNNNNTGG	1 cut(s)	603
BstZ17I	GTATAC	1 cut(s)	56
BsuI	GTATCC	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	740
BtgI	CCRYGG	1 cut(s)	300
BtsCI	GGATG	4 cut(s)	530, 637, 741, 777
Cfr13I	GGNCC	1 cut(s)	739
CseI	GACGC	1 cut(s)	114
CsiI	ACCWGGT	1 cut(s)	406
CviAII	CATG	3 cut(s)	301, 380, 727
DdeI	CTNAG	4 cut(s)	86, 113, 510, 678
DraI	TTTAAA	1 cut(s)	132
DraIII	CACNNNGTG	1 cut(s)	709
Eam1104I	CTCTTC	2 cut(s)	300, 546
EarI	CTCTTC	2 cut(s)	300, 546
Eco130I	CCWWGG	1 cut(s)	300
Eco31I	GGTCTC	1 cut(s)	123
Eco88I	CYCGRG	2 cut(s)	120, 347
EcoRII	CCWGG	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	3 cut(s)	304, 383, 730
FaqI	GGGAC	1 cut(s)	620
FatI	CATG	3 cut(s)	300, 379, 726
FblI	GTMKAC	1 cut(s)	55
Fnu4HI	GCNGC	3 cut(s)	363, 501, 723
FokI	GGATG	4 cut(s)	537, 644, 748, 764
Fsp4HI	GCNGC	3 cut(s)	363, 501, 723
FspBI	CTAG	2 cut(s)	51, 212
GluI	GCNGC	3 cut(s)	363, 501, 723
HaeIII	GGCC	1 cut(s)	740
HgaI	GACGC	1 cut(s)	114
Hin1II	CATG	3 cut(s)	304, 383, 730
HindIII	AAGCTT	1 cut(s)	141
HinfI	GANTC	6 cut(s)	47, 285, 337, 395, 730, 760
HphI	GGTGA	1 cut(s)	779
Hpy166II	GTNNAC	3 cut(s)	56, 492, 770
Hpy188I	TCNGA	5 cut(s)	46, 87, 258, 699, 735
Hpy188III	TCNNGA	4 cut(s)	120, 440, 522, 656
Hpy8I	GTNNAC	3 cut(s)	56, 492, 770
HpyAV	CCTTC	1 cut(s)	552
HpyCH4III	ACNGT	2 cut(s)	152, 267
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	5 cut(s)	220, 365, 403, 500, 746
HpyF3I	CTNAG	4 cut(s)	86, 113, 510, 678
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	3 cut(s)	304, 383, 730
LguI	GCTCTTC	1 cut(s)	300
LmnI	GCTCC	3 cut(s)	81, 187, 640
LpnPI	CCDG	9 cut(s)	107, 353, 376, 393, 420, 507, 517, 641, 658
Lsp1109I	GCAGC	3 cut(s)	349, 512, 709
LweI	GCATC	2 cut(s)	169, 390
MabI	ACCWGGT	1 cut(s)	406
MaeI	CTAG	2 cut(s)	51, 212
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	2 cut(s)	16, 89
MboII	GAAGA	5 cut(s)	114, 216, 317, 379, 563
MhlI	GDGCHC	1 cut(s)	645
MluCI	AATT	2 cut(s)	39, 475
MlyI	GAGTC	3 cut(s)	279, 404, 739
MmeI	TCCRAC	1 cut(s)	713
MnlI	CCTC	8 cut(s)	89, 116, 174, 233, 435, 540, 559, 589
MseI	TTAA	4 cut(s)	131, 542, 591, 790
MslI	CAYNNNNRTG	2 cut(s)	601, 626
MspR9I	CCNGG	1 cut(s)	408
MvaI	CCWGG	1 cut(s)	408
NcoI	CCATGG	1 cut(s)	300
NlaIII	CATG	3 cut(s)	304, 383, 730
NlaIV	GGNNCC	1 cut(s)	189
NmuCI	GTSAC	1 cut(s)	16
OliI	CACNNNNGTG	1 cut(s)	601
PaeR7I	CTCGAG	1 cut(s)	120
PciSI	GCTCTTC	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	2 cut(s)	606, 739
PfeI	GAWTC	3 cut(s)	47, 337, 760
PkrI	GCNGC	3 cut(s)	364, 502, 724
PleI	GAGTC	3 cut(s)	279, 403, 738
PpsI	GAGTC	3 cut(s)	279, 403, 738
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	739
RseI	CAYNNNNRTG	2 cut(s)	601, 626
SapI	GCTCTTC	1 cut(s)	300
SaqAI	TTAA	4 cut(s)	131, 542, 591, 790
SatI	GCNGC	3 cut(s)	363, 501, 723
Sau96I	GGNCC	1 cut(s)	739
SchI	GAGTC	3 cut(s)	279, 404, 739
ScrFI	CCNGG	1 cut(s)	408
SduI	GDGCHC	1 cut(s)	645
SexAI	ACCWGGT	1 cut(s)	406
SfaNI	GCATC	2 cut(s)	169, 390
Sfr274I	CTCGAG	1 cut(s)	120
SlaI	CTCGAG	1 cut(s)	120
SmiMI	CAYNNNNRTG	2 cut(s)	601, 626
SmlI	CTYRAG	3 cut(s)	120, 440, 563
SmoI	CTYRAG	3 cut(s)	120, 440, 563
Sse9I	AATT	2 cut(s)	39, 475
SspMI	CTAG	2 cut(s)	51, 212
StyD4I	CCNGG	1 cut(s)	406
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	2 cut(s)	152, 267
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	3 cut(s)	121, 238, 398
TasI	AATT	2 cut(s)	39, 475
TfiI	GAWTC	3 cut(s)	47, 337, 760
Tru1I	TTAA	4 cut(s)	131, 542, 591, 790
Tru9I	TTAA	4 cut(s)	131, 542, 591, 790
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	3 cut(s)	362, 500, 722
Tsp45I	GTSAC	1 cut(s)	16
XapI	RAATTY	1 cut(s)	475
XcmI	CCANNNNNNNNNTGG	1 cut(s)	733
XhoI	CTCGAG	1 cut(s)	120
XmiI	GTMKAC	1 cut(s)	55
XspI	CTAG	2 cut(s)	51, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.