Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0012775

Physical Location & Seq

Genomic Coordinates Reverse (-)

372144 .. 374479

Gene Structure 2336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1005800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAATTTTCTCACTCTTTTAAGAGTCCCCAGCTTCCTCCTCTGGTACAAAAGACAGCCCGATGGGTCTCCAAGAGCTTCTAGAGTTGTTGCTTACTACGGATTGAAGAAACCTCCGTATAAACTTGATGCTTTGGAGCCGTATATGAGTCAGAGAACATTGGACGTTCATTGGGGAGGCCATCATCAAAACTATGTGGAAGGTCTGAACAAACAGCTAGAGAAGAGTGACATACTATATGGCTGCACTTTCGATGAACTTGTCAAAGCAACATATAATAATGGGAATCCTTTACCTGAATTTAAGAACGCTGCTCAGGTCTGGAATCATGACTTCTTTTGGGAGTCCATGCAACCGGGAGGAGGAGACATGCCCCAACTGGGTGTCCTTCAGCAGATAGAAAAGGATTTTGGTTCGTTTACTAATTTCAGAGAGAAGTTTACAGAAGCAGCACTTACACTATTTGGGTCTGGCTGGGTTTGGCTTGTTTTAAAGAGAGAAGAGAGACGACTTCAGATAATTAAAACTTCAAATGCCATTTGCCCAATTGTTTGGGGTGACGTACCTATAATCAGTTTGGATCTGTGGGAGCATGCTTATTATCTGGATTACAAGAATGACAGAGGAAAGTACGTGGATGCGTTTATGAACCATCTTGTGTCTTGGAATGCGGCAATGGCACGCATGGCTCGAGCTGAGGCCTTTGTGAATTTAAACGAACCTAACATCCCTGTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

247

Amino Acids

28.46

Weight (kDa)

6.6

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	33 - 117	1.8e-18	Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C	PF02777	129 - 227	5.3e-36	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23310
fragaria_vesca	FvH4_4g37110 FvH4_4g37110
malus_domestica	MD00G1043500.v1.1 MD13G1005800.v1.1 MD16G1002100.v1.1
prunus_persica	Prupe.1G347200_v2.0.a1 Prupe.1G347200_v2.0.a1
pyrus_communis	pycom13g00480 pycom16g00360
rosa_chinensis	RchiOBHm_Chr4g0446901
rosa_roxburghii	Rroxscaffold_5G00387240
rosa_rugosa	Rorug04G0375800
rosa_samantha	Rh4AG437000 Rh4BG446200 Rh4CG463500 Rh4DG444800
rosa_wichuraiana	Rw4G037390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	671
AclWI	GGATC	1 cut(s)	588
AcsI	RAATTY	3 cut(s)	4, 299, 709
AcuI	CTGAAG	2 cut(s)	374, 497
AfaI	GTAC	3 cut(s)	47, 564, 632
AfiI	CCNNNNNNNGG	2 cut(s)	362, 380
AgsI	TTSAA	2 cut(s)	106, 531
AjuI	GAANNNNNNNTTGG	2 cut(s)	393, 425
AloI	GAACNNNNNNTCC	1 cut(s)	711
AluBI	AGCT	4 cut(s)	33, 77, 217, 695
AluI	AGCT	4 cut(s)	33, 77, 217, 695
Alw26I	GTCTC	3 cut(s)	72, 360, 499
AlwI	GGATC	1 cut(s)	588
Ama87I	CYCGRG	1 cut(s)	690
AoxI	GGCC	2 cut(s)	178, 699
ApeKI	GCWGC	3 cut(s)	243, 311, 449
ApoI	RAATTY	3 cut(s)	4, 299, 709
AsuC2I	CCSGG	1 cut(s)	357
AsuHPI	GGTGA	1 cut(s)	569
AvaI	CYCGRG	1 cut(s)	690
BbvCI	CCTCAGC	1 cut(s)	696
BbvI	GCAGC	3 cut(s)	230, 298, 461
BccI	CCATC	3 cut(s)	56, 189, 660
BceAI	ACGGC	1 cut(s)	124
BcnI	CCSGG	1 cut(s)	357
BcoDI	GTCTC	3 cut(s)	72, 360, 499
BfaI	CTAG	2 cut(s)	81, 218
BisI	GCNGC	4 cut(s)	244, 312, 450, 672
BlsI	GCNGC	4 cut(s)	245, 313, 451, 673
Bme1390I	CCNGG	1 cut(s)	357
BmeT110I	CYCGRG	1 cut(s)	690
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	357
BmrI	ACTGGG	1 cut(s)	389
BmsI	GCATC	2 cut(s)	118, 628
BmuI	ACTGGG	1 cut(s)	389
Bpu10I	CCTNAGC	2 cut(s)	315, 696
BpuMI	CCSGG	1 cut(s)	357
BsaAI	YACGTR	1 cut(s)	634
BsaI	GGTCTC	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	2 cut(s)	362, 380
Bse1I	ACTGG	1 cut(s)	384
Bse3DI	GCAATG	1 cut(s)	681
BseGI	GGATG	2 cut(s)	643, 726
BseLI	CCNNNNNNNGG	2 cut(s)	362, 380
BseMI	GCAATG	1 cut(s)	681
BseMII	CTCAG	2 cut(s)	329, 687
BseNI	ACTGG	1 cut(s)	384
BseRI	GAGGAG	3 cut(s)	29, 375, 378
BseXI	GCAGC	3 cut(s)	230, 298, 461
BseYI	CCCAGC	2 cut(s)	29, 474
BsgI	GTGCAG	1 cut(s)	229
BshFI	GGCC	2 cut(s)	180, 701
BsiHKCI	CYCGRG	1 cut(s)	690
BsiSI	CCGG	1 cut(s)	356
BslFI	GGGAC	1 cut(s)	11
BslI	CCNNNNNNNGG	2 cut(s)	362, 380
BsmAI	GTCTC	3 cut(s)	72, 360, 499
BsmBI	CGTCTC	1 cut(s)	499
BsmFI	GGGAC	1 cut(s)	11
BsmI	GAATGC	1 cut(s)	673
BsnI	GGCC	2 cut(s)	180, 701
Bso31I	GGTCTC	1 cut(s)	72
BsoBI	CYCGRG	1 cut(s)	690
Bsp143I	GATC	1 cut(s)	580
BspACI	CCGC	1 cut(s)	671
BspANI	GGCC	2 cut(s)	180, 701
BspCNI	CTCAG	2 cut(s)	328, 688
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	138
BspPI	GGATC	1 cut(s)	588
BspTNI	GGTCTC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	681
BsrI	ACTGG	1 cut(s)	384
BssMI	GATC	1 cut(s)	580
Bst6I	CTCTTC	2 cut(s)	218, 495
BstBAI	YACGTR	1 cut(s)	634
BstC8I	GCNNGC	2 cut(s)	594, 682
BstDEI	CTNAG	3 cut(s)	315, 696, 738
BstF5I	GGATG	2 cut(s)	643, 726
BstKTI	GATC	1 cut(s)	583
BstMAI	GTCTC	3 cut(s)	72, 360, 499
BstMBI	GATC	1 cut(s)	580
BstMWI	GCNNNNNNNGC	2 cut(s)	677, 686
BstNSI	RCATGY	2 cut(s)	373, 596
BstSCI	CCNGG	1 cut(s)	355
BstV1I	GCAGC	3 cut(s)	230, 298, 461
BstX2I	RGATCY	1 cut(s)	580
BstXI	CCANNNNNNTGG	1 cut(s)	552
BstYI	RGATCY	1 cut(s)	580
BsuRI	GGCC	2 cut(s)	180, 701
BtsCI	GGATG	2 cut(s)	643, 726
Cac8I	GCNNGC	2 cut(s)	594, 682
CciI	TCATGA	1 cut(s)	328
Csp6I	GTAC	3 cut(s)	46, 563, 631
CviAII	CATG	5 cut(s)	329, 349, 370, 593, 685
CviQI	GTAC	3 cut(s)	46, 563, 631
DdeI	CTNAG	3 cut(s)	315, 696, 738
DpnI	GATC	1 cut(s)	582
DpnII	GATC	1 cut(s)	580
DraI	TTTAAA	2 cut(s)	492, 714
Eam1104I	CTCTTC	2 cut(s)	218, 495
EarI	CTCTTC	2 cut(s)	218, 495
Eco147I	AGGCCT	1 cut(s)	701
Eco31I	GGTCTC	1 cut(s)	72
Eco57I	CTGAAG	2 cut(s)	374, 497
Eco88I	CYCGRG	1 cut(s)	690
Esp3I	CGTCTC	1 cut(s)	499
FaeI	CATG	5 cut(s)	332, 352, 373, 596, 688
FalI	AAGNNNNNCTT	2 cut(s)	438, 470
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	5 cut(s)	328, 348, 369, 592, 684
Fnu4HI	GCNGC	4 cut(s)	244, 312, 450, 672
FokI	GGATG	2 cut(s)	650, 713
Fsp4HI	GCNGC	4 cut(s)	244, 312, 450, 672
FspBI	CTAG	2 cut(s)	81, 218
GluI	GCNGC	4 cut(s)	244, 312, 450, 672
GsaI	CCCAGC	2 cut(s)	33, 478
HaeIII	GGCC	2 cut(s)	180, 701
HapII	CCGG	1 cut(s)	356
Hin1II	CATG	5 cut(s)	332, 352, 373, 596, 688
HinfI	GANTC	5 cut(s)	24, 148, 286, 325, 344
HpaII	CCGG	1 cut(s)	356
HphI	GGTGA	1 cut(s)	569
Hpy166II	GTNNAC	2 cut(s)	420, 441
Hpy188I	TCNGA	4 cut(s)	153, 207, 431, 516
Hpy188III	TCNNGA	4 cut(s)	81, 322, 329, 605
Hpy8I	GTNNAC	2 cut(s)	420, 441
HpyAV	CCTTC	2 cut(s)	194, 398
HpyCH4IV	ACGT	3 cut(s)	165, 561, 633
HpyCH4V	TGCA	2 cut(s)	246, 352
HpyF10VI	GCNNNNNNNGC	2 cut(s)	677, 686
HpyF3I	CTNAG	3 cut(s)	315, 696, 738
HpySE526I	ACGT	3 cut(s)	165, 561, 633
Hsp92II	CATG	5 cut(s)	332, 352, 373, 596, 688
Kzo9I	GATC	1 cut(s)	580
LmnI	GCTCC	2 cut(s)	136, 589
Lsp1109I	GCAGC	3 cut(s)	230, 298, 461
LweI	GCATC	2 cut(s)	118, 628
MaeI	CTAG	2 cut(s)	81, 218
MaeII	ACGT	3 cut(s)	165, 561, 633
MaeIII	GTNAC	2 cut(s)	227, 557
MalI	GATC	1 cut(s)	582
MboI	GATC	1 cut(s)	580
MboII	GAAGA	3 cut(s)	118, 235, 512
MfeI	CAATTG	1 cut(s)	546
MflI	RGATCY	1 cut(s)	580
MluCI	AATT	6 cut(s)	4, 299, 424, 519, 546, 709
MlyI	GAGTC	3 cut(s)	33, 157, 353
MnlI	CCTC	8 cut(s)	47, 50, 123, 170, 353, 356, 617, 691
MseI	TTAA	5 cut(s)	20, 303, 491, 522, 713
MslI	CAYNNNNRTG	1 cut(s)	731
MspI	CCGG	1 cut(s)	356
MspR9I	CCNGG	1 cut(s)	357
MunI	CAATTG	1 cut(s)	546
Mva1269I	GAATGC	1 cut(s)	673
MwoI	GCNNNNNNNGC	2 cut(s)	677, 686
NciI	CCSGG	1 cut(s)	357
NdeII	GATC	1 cut(s)	580
NlaIII	CATG	5 cut(s)	332, 352, 373, 596, 688
NlaIV	GGNNCC	1 cut(s)	138
NmuCI	GTSAC	2 cut(s)	227, 557
NspI	RCATGY	2 cut(s)	373, 596
PaeI	GCATGC	1 cut(s)	596
PaeR7I	CTCGAG	1 cut(s)	690
PagI	TCATGA	1 cut(s)	328
PceI	AGGCCT	1 cut(s)	701
PcsI	WCGNNNNNNNCGW	1 cut(s)	688
PctI	GAATGC	1 cut(s)	673
PfeI	GAWTC	2 cut(s)	286, 325
PkrI	GCNGC	4 cut(s)	245, 313, 451, 673
PleI	GAGTC	3 cut(s)	32, 156, 352
PpsI	GAGTC	3 cut(s)	32, 156, 352
Ppu21I	YACGTR	1 cut(s)	634
PspFI	CCCAGC	2 cut(s)	29, 474
PspN4I	GGNNCC	1 cut(s)	138
PspXI	VCTCGAGB	1 cut(s)	690
PsuI	RGATCY	1 cut(s)	580
RsaI	GTAC	3 cut(s)	47, 564, 632
RsaNI	GTAC	3 cut(s)	46, 563, 631
RseI	CAYNNNNRTG	1 cut(s)	731
SaqAI	TTAA	5 cut(s)	20, 303, 491, 522, 713
SatI	GCNGC	4 cut(s)	244, 312, 450, 672
Sau3AI	GATC	1 cut(s)	580
SchI	GAGTC	3 cut(s)	33, 157, 353
ScrFI	CCNGG	1 cut(s)	357
SfaNI	GCATC	2 cut(s)	118, 628
Sfr274I	CTCGAG	1 cut(s)	690
SlaI	CTCGAG	1 cut(s)	690
SmiMI	CAYNNNNRTG	1 cut(s)	731
SmlI	CTYRAG	1 cut(s)	690
SmoI	CTYRAG	1 cut(s)	690
SphI	GCATGC	1 cut(s)	596
Sse9I	AATT	6 cut(s)	4, 299, 424, 519, 546, 709
SseBI	AGGCCT	1 cut(s)	701
SsiI	CCGC	1 cut(s)	671
SspMI	CTAG	2 cut(s)	81, 218
StuI	AGGCCT	1 cut(s)	701
StyD4I	CCNGG	1 cut(s)	355
TaiI	ACGT	3 cut(s)	168, 564, 636
TaqI	TCGA	2 cut(s)	252, 691
TasI	AATT	6 cut(s)	4, 299, 424, 519, 546, 709
TauI	GCSGC	1 cut(s)	674
TfiI	GAWTC	2 cut(s)	286, 325
Tru1I	TTAA	5 cut(s)	20, 303, 491, 522, 713
Tru9I	TTAA	5 cut(s)	20, 303, 491, 522, 713
TseFI	GTSAC	2 cut(s)	227, 557
TseI	GCWGC	3 cut(s)	243, 311, 449
Tsp45I	GTSAC	2 cut(s)	227, 557
TspDTI	ATGAA	4 cut(s)	17, 158, 270, 662
TspGWI	ACGGA	2 cut(s)	105, 114
XapI	RAATTY	3 cut(s)	4, 299, 709
XbaI	TCTAGA	1 cut(s)	80
XceI	RCATGY	2 cut(s)	373, 596
XhoI	CTCGAG	1 cut(s)	690
XspI	CTAG	2 cut(s)	81, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.