Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0012775

Physical Location & Seq

Genomic Coordinates Forward (+)

33715383 .. 33718618

Gene Structure 3236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g37110.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGATATCCGCTTCTTCTCTTCCAAGCTCTCATCTTTTGTTGATTCACTCTTCTCACTGTTTTAAGACTCCCAAGCTATCTCATCAGTGTAAGCAGCAGAAAAGAAGGGCTGATGGGTCACAACGAGCTTCTAAAGTTGTTGCCTACTATGGCTTGAAGGAACCACCTTATAAACTTGATGCTTTGGAGCCGTATATGAGTCAGAGGACATTGGAGGTCCATTGGGGAGGCCATCATCGTAACTACGTGGAAGGTTTGAACAAACAGCTAGAGAAGAGCGACATACTGTATGGCTACACTTTTGATGAACTTGTCAAAGCAACATATAATAATGGGAATCCCTTACCTGAGTTTAACAATGCTGCCCAGGTCTGGAATCATGACTTCTTTTGGGATTCCATGCAACCTGGAGGAGGGGACATGCCCAAACTAGGTGTACTTGAGCAGATTGAAAAGGATTTTGGTTCCTATGCAAGTTTCAGAGAGAAGTTTATAGAGGCAGCACTAACTCTGTTTGGCTCAGGCTGGGTTTGGCTTGTTTTAAAGAGAGAAGAGAGACAACTCAAGATAGTTAGAACTTCAAATGCCATTTGCCCAATTGTCTGGGATGACATACCGATAATCTGTTTGGATATGTGGGAGCATGCTTATTATCTGGATTACAAGAATGACAAAGGAAAGTATGTGGATACATTTATGAACCATCTTGTGTCTTGGAATGCGGCAATGGTGCGCATGGCCCGTGCTGAGGCGTTTGTGAATTTAGGAGAACCTAATATCCCTGTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

264

Amino Acids

30.24

Weight (kDa)

6.79

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	50 - 134	5.5e-19	Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C	PF02777	146 - 203	2.8e-14	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23310
fragaria_vesca	FvH4_4g37110 FvH4_4g37110
malus_domestica	MD00G1043500.v1.1 MD13G1005800.v1.1 MD16G1002100.v1.1
prunus_persica	Prupe.1G347200_v2.0.a1 Prupe.1G347200_v2.0.a1
pyrus_communis	pycom13g00480 pycom16g00360
rosa_chinensis	RchiOBHm_Chr4g0446901
rosa_roxburghii	Rroxscaffold_5G00387240
rosa_rugosa	Rorug04G0375800
rosa_samantha	Rh4AG437000 Rh4BG446200 Rh4CG463500 Rh4DG444800
rosa_wichuraiana	Rw4G037390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	171
Acc16I	TGCGCA	1 cut(s)	734
AciI	CCGC	2 cut(s)	9, 722
AcsI	RAATTY	1 cut(s)	760
AfaI	GTAC	1 cut(s)	438
AfiI	CCNNNNNNNGG	4 cut(s)	372, 413, 431, 748
AgsI	TTSAA	4 cut(s)	157, 259, 452, 582
AjnI	CCWGG	2 cut(s)	366, 406
AjuI	GAANNNNNNNTTGG	2 cut(s)	444, 476
AloI	GAACNNNNNNTCC	1 cut(s)	762
AluBI	AGCT	4 cut(s)	27, 76, 128, 268
AluI	AGCT	4 cut(s)	27, 76, 128, 268
Alw26I	GTCTC	1 cut(s)	550
AoxI	GGCC	2 cut(s)	229, 738
ApeKI	GCWGC	3 cut(s)	94, 362, 500
ApoI	RAATTY	1 cut(s)	760
AspLEI	GCGC	1 cut(s)	735
AspS9I	GGNCC	2 cut(s)	217, 739
AvaII	GGWCC	1 cut(s)	217
BbvCI	CCTCAGC	1 cut(s)	747
BbvI	GCAGC	3 cut(s)	106, 349, 512
BccI	CCATC	3 cut(s)	107, 240, 711
BceAI	ACGGC	1 cut(s)	175
BciT130I	CCWGG	2 cut(s)	368, 408
BciVI	GTATCC	1 cut(s)	682
BcoDI	GTCTC	1 cut(s)	550
BfaI	CTAG	2 cut(s)	269, 431
BfuI	GTATCC	1 cut(s)	682
BisI	GCNGC	4 cut(s)	95, 363, 501, 723
BlsI	GCNGC	4 cut(s)	96, 364, 502, 724
Bme1390I	CCNGG	2 cut(s)	368, 408
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	2 cut(s)	217, 739
BmiI	GGNNCC	3 cut(s)	162, 189, 466
BmrFI	CCNGG	2 cut(s)	368, 408
BmsI	GCATC	1 cut(s)	169
BpmI	CTGGAG	1 cut(s)	429
Bpu10I	CCTNAGC	2 cut(s)	520, 747
BpuEI	CTTGAG	2 cut(s)	461, 548
BsaAI	YACGTR	1 cut(s)	247
BsaJI	CCNNGG	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	4 cut(s)	372, 413, 431, 748
Bse3DI	GCAATG	1 cut(s)	732
BseBI	CCWGG	2 cut(s)	368, 408
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	1 cut(s)	613
BseLI	CCNNNNNNNGG	4 cut(s)	372, 413, 431, 748
BseMI	GCAATG	1 cut(s)	732
BseMII	CTCAG	3 cut(s)	339, 534, 738
BseRI	GAGGAG	1 cut(s)	426
BseXI	GCAGC	3 cut(s)	106, 349, 512
BseYI	CCCAGC	1 cut(s)	525
BshFI	GGCC	2 cut(s)	231, 740
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	4 cut(s)	372, 413, 431, 748
BsmAI	GTCTC	1 cut(s)	550
BsmFI	GGGAC	1 cut(s)	431
BsmI	GAATGC	1 cut(s)	724
BsnI	GGCC	2 cut(s)	231, 740
BspACI	CCGC	2 cut(s)	9, 722
BspANI	GGCC	2 cut(s)	231, 740
BspCNI	CTCAG	3 cut(s)	340, 533, 739
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	3 cut(s)	162, 189, 466
BspQI	GCTCTTC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	732
BssECI	CCNNGG	1 cut(s)	366
Bst2UI	CCWGG	2 cut(s)	368, 408
Bst4CI	ACNGT	2 cut(s)	59, 288
Bst6I	CTCTTC	4 cut(s)	24, 55, 269, 546
BstBAI	YACGTR	1 cut(s)	247
BstC8I	GCNNGC	1 cut(s)	645
BstDEI	CTNAG	3 cut(s)	348, 520, 747
BstENI	CCTNNNNNAGG	1 cut(s)	411
BstF5I	GGATG	1 cut(s)	613
BstHHI	GCGC	1 cut(s)	735
BstMAI	GTCTC	1 cut(s)	550
BstNI	CCWGG	2 cut(s)	368, 408
BstNSI	RCATGY	2 cut(s)	424, 647
BstSCI	CCNGG	2 cut(s)	366, 406
BstV1I	GCAGC	3 cut(s)	106, 349, 512
BstXI	CCANNNNNNTGG	1 cut(s)	603
BsuI	GTATCC	1 cut(s)	682
BsuRI	GGCC	2 cut(s)	231, 740
BtsCI	GGATG	1 cut(s)	613
BtsIMutI	CAGTG	2 cut(s)	55, 92
Cac8I	GCNNGC	1 cut(s)	645
CciI	TCATGA	1 cut(s)	379
CfoI	GCGC	1 cut(s)	735
Cfr13I	GGNCC	2 cut(s)	217, 739
Csp6I	GTAC	1 cut(s)	437
CviAII	CATG	5 cut(s)	380, 400, 421, 644, 736
CviQI	GTAC	1 cut(s)	437
DdeI	CTNAG	3 cut(s)	348, 520, 747
DraI	TTTAAA	1 cut(s)	543
Eam1104I	CTCTTC	4 cut(s)	24, 55, 269, 546
EarI	CTCTTC	4 cut(s)	24, 55, 269, 546
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	217
EcoNI	CCTNNNNNAGG	1 cut(s)	411
EcoRII	CCWGG	2 cut(s)	366, 406
EcoRV	GATATC	1 cut(s)	6
FaeI	CATG	5 cut(s)	383, 403, 424, 647, 739
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	5 cut(s)	379, 399, 420, 643, 735
Fnu4HI	GCNGC	4 cut(s)	95, 363, 501, 723
FokI	GGATG	1 cut(s)	620
Fsp4HI	GCNGC	4 cut(s)	95, 363, 501, 723
FspAI	RTGCGCAY	1 cut(s)	734
FspBI	CTAG	2 cut(s)	269, 431
FspI	TGCGCA	1 cut(s)	734
GlaI	GCGC	1 cut(s)	734
GluI	GCNGC	4 cut(s)	95, 363, 501, 723
GsaI	CCCAGC	1 cut(s)	529
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	2 cut(s)	231, 740
HhaI	GCGC	1 cut(s)	735
Hin1II	CATG	5 cut(s)	383, 403, 424, 647, 739
Hin6I	GCGC	1 cut(s)	733
HinP1I	GCGC	1 cut(s)	733
HinfI	GANTC	6 cut(s)	43, 67, 199, 337, 376, 395
Hpy166II	GTNNAC	1 cut(s)	437
Hpy188I	TCNGA	2 cut(s)	204, 482
Hpy188III	TCNNGA	4 cut(s)	373, 380, 565, 656
Hpy8I	GTNNAC	1 cut(s)	437
HpyAV	CCTTC	3 cut(s)	99, 151, 245
HpyCH4III	ACNGT	2 cut(s)	59, 288
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	2 cut(s)	403, 473
HpyF3I	CTNAG	3 cut(s)	348, 520, 747
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	5 cut(s)	383, 403, 424, 647, 739
HspAI	GCGC	1 cut(s)	733
LguI	GCTCTTC	1 cut(s)	269
LmnI	GCTCC	2 cut(s)	187, 640
Lsp1109I	GCAGC	3 cut(s)	106, 349, 512
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	2 cut(s)	269, 431
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	2 cut(s)	117, 239
MboII	GAAGA	5 cut(s)	6, 11, 42, 286, 563
MfeI	CAATTG	1 cut(s)	597
MluCI	AATT	2 cut(s)	597, 760
MlyI	GAGTC	2 cut(s)	61, 208
MnlI	CCTC	7 cut(s)	198, 208, 221, 404, 407, 490, 742
MseI	TTAA	4 cut(s)	63, 354, 542, 790
MspR9I	CCNGG	2 cut(s)	368, 408
MunI	CAATTG	1 cut(s)	597
Mva1269I	GAATGC	1 cut(s)	724
MvaI	CCWGG	2 cut(s)	368, 408
NlaIII	CATG	5 cut(s)	383, 403, 424, 647, 739
NlaIV	GGNNCC	3 cut(s)	162, 189, 466
NmuCI	GTSAC	1 cut(s)	117
NsbI	TGCGCA	1 cut(s)	734
NspI	RCATGY	2 cut(s)	424, 647
PaeI	GCATGC	1 cut(s)	647
PagI	TCATGA	1 cut(s)	379
PciSI	GCTCTTC	1 cut(s)	269
PctI	GAATGC	1 cut(s)	724
PfeI	GAWTC	4 cut(s)	43, 337, 376, 395
PkrI	GCNGC	4 cut(s)	96, 364, 502, 724
PleI	GAGTC	2 cut(s)	61, 207
PpsI	GAGTC	2 cut(s)	61, 207
Ppu21I	YACGTR	1 cut(s)	247
PsiI	TTATAA	1 cut(s)	171
Psp6I	CCWGG	2 cut(s)	366, 406
PspFI	CCCAGC	1 cut(s)	525
PspGI	CCWGG	2 cut(s)	366, 406
PspN4I	GGNNCC	3 cut(s)	162, 189, 466
PspPI	GGNCC	2 cut(s)	217, 739
RsaI	GTAC	1 cut(s)	438
RsaNI	GTAC	1 cut(s)	437
SapI	GCTCTTC	1 cut(s)	269
SaqAI	TTAA	4 cut(s)	63, 354, 542, 790
SatI	GCNGC	4 cut(s)	95, 363, 501, 723
Sau96I	GGNCC	2 cut(s)	217, 739
SchI	GAGTC	2 cut(s)	61, 208
ScrFI	CCNGG	2 cut(s)	368, 408
SfaNI	GCATC	1 cut(s)	169
SinI	GGWCC	1 cut(s)	217
SmlI	CTYRAG	2 cut(s)	440, 563
SmoI	CTYRAG	2 cut(s)	440, 563
SphI	GCATGC	1 cut(s)	647
Sse9I	AATT	2 cut(s)	597, 760
SsiI	CCGC	2 cut(s)	9, 722
SspMI	CTAG	2 cut(s)	269, 431
StyD4I	CCNGG	2 cut(s)	366, 406
TaaI	ACNGT	2 cut(s)	59, 288
TaiI	ACGT	1 cut(s)	249
TasI	AATT	2 cut(s)	597, 760
TatI	WGTACW	1 cut(s)	436
TauI	GCSGC	1 cut(s)	725
TfiI	GAWTC	4 cut(s)	43, 337, 376, 395
Tru1I	TTAA	4 cut(s)	63, 354, 542, 790
Tru9I	TTAA	4 cut(s)	63, 354, 542, 790
TscAI	CASTG	2 cut(s)	62, 92
TseFI	GTSAC	1 cut(s)	117
TseI	GCWGC	3 cut(s)	94, 362, 500
Tsp45I	GTSAC	1 cut(s)	117
TspDTI	ATGAA	2 cut(s)	321, 713
TspRI	CASTG	2 cut(s)	62, 92
VpaK11BI	GGWCC	1 cut(s)	217
XagI	CCTNNNNNAGG	1 cut(s)	411
XapI	RAATTY	1 cut(s)	760
XceI	RCATGY	2 cut(s)	424, 647
XspI	CTAG	2 cut(s)	269, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.