Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0012775

Physical Location & Seq

Genomic Coordinates Forward (+)

7831034 .. 7832655

Gene Structure 1622 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1043500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAACTTGTCAAAGCAACAATATAATAATGGGAATCCTTTACTGAATTTTAAGACGCTGGTCTGGAATCATGACTTCTTTTGGGAGTCCATGCAACCGGGAGGAGGAGACATGCCCCAACTGGGTGTCCTTCAGCAGATAGAAAAGGATTTTGGTTCGTTTACTAATTTCAGAGAGAAGTTTACAGAAGCAGCACTTACACTATTTGGGTCTGGCTGGGTTTGGCTTGTTTTAAAGAGAGAAGAGAGACGACTTCAGATAATTAAAACTTCAAATGCCATTTGCCCAATTGTTTGGGGTGACGTACCTATAATCAGTTTGGATCTGTGGGAGCATGCTTATTATCTGGATTACAAGAATGACAGAGGAAAGTACGTGGATGCGTTTATGAACCATCTTGTGTCTTGGAATGCGGCAATGGCACGCATGGCTCGAGCTGAGGCCTTTGTGAATTTAAACGAACCTAACATCCCTGTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

161

Amino Acids

18.53

Weight (kDa)

5.9

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_C	PF02777	43 - 141	1.7e-36	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23310
fragaria_vesca	FvH4_4g37110 FvH4_4g37110
malus_domestica	MD00G1043500.v1.1 MD13G1005800.v1.1 MD16G1002100.v1.1
prunus_persica	Prupe.1G347200_v2.0.a1 Prupe.1G347200_v2.0.a1
pyrus_communis	pycom13g00480 pycom16g00360
rosa_chinensis	RchiOBHm_Chr4g0446901
rosa_roxburghii	Rroxscaffold_5G00387240
rosa_rugosa	Rorug04G0375800
rosa_samantha	Rh4AG437000 Rh4BG446200 Rh4CG463500 Rh4DG444800
rosa_wichuraiana	Rw4G037390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	413
AclWI	GGATC	1 cut(s)	330
AcsI	RAATTY	2 cut(s)	46, 451
AcuI	CTGAAG	2 cut(s)	116, 239
AfaI	GTAC	2 cut(s)	306, 374
AfiI	CCNNNNNNNGG	2 cut(s)	104, 122
AgsI	TTSAA	1 cut(s)	273
AjuI	GAANNNNNNNTTGG	2 cut(s)	135, 167
AloI	GAACNNNNNNTCC	1 cut(s)	453
AluBI	AGCT	1 cut(s)	437
AluI	AGCT	1 cut(s)	437
Alw26I	GTCTC	2 cut(s)	102, 241
AlwI	GGATC	1 cut(s)	330
Ama87I	CYCGRG	1 cut(s)	432
AoxI	GGCC	1 cut(s)	441
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	2 cut(s)	46, 451
AsuC2I	CCSGG	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	311
AvaI	CYCGRG	1 cut(s)	432
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	1 cut(s)	203
BccI	CCATC	1 cut(s)	402
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	2 cut(s)	102, 241
BisI	GCNGC	2 cut(s)	192, 414
BlsI	GCNGC	2 cut(s)	193, 415
Bme1390I	CCNGG	1 cut(s)	99
BmeT110I	CYCGRG	1 cut(s)	432
BmrFI	CCNGG	1 cut(s)	99
BmrI	ACTGGG	1 cut(s)	131
BmsI	GCATC	1 cut(s)	370
BmuI	ACTGGG	1 cut(s)	131
BoxI	GACNNNNGTC	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	438
BpuMI	CCSGG	1 cut(s)	99
BsaAI	YACGTR	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 122
Bse1I	ACTGG	1 cut(s)	126
Bse3DI	GCAATG	1 cut(s)	423
BseGI	GGATG	2 cut(s)	385, 468
BseLI	CCNNNNNNNGG	2 cut(s)	104, 122
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	1 cut(s)	126
BseRI	GAGGAG	2 cut(s)	117, 120
BseXI	GCAGC	1 cut(s)	203
BseYI	CCCAGC	1 cut(s)	216
BshFI	GGCC	1 cut(s)	443
BsiHKCI	CYCGRG	1 cut(s)	432
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	2 cut(s)	104, 122
BsmAI	GTCTC	2 cut(s)	102, 241
BsmBI	CGTCTC	1 cut(s)	241
BsmI	GAATGC	1 cut(s)	415
BsnI	GGCC	1 cut(s)	443
BsoBI	CYCGRG	1 cut(s)	432
Bsp143I	GATC	1 cut(s)	322
BspACI	CCGC	1 cut(s)	413
BspANI	GGCC	1 cut(s)	443
BspCNI	CTCAG	1 cut(s)	430
BspHI	TCATGA	1 cut(s)	70
BspPI	GGATC	1 cut(s)	330
BsrDI	GCAATG	1 cut(s)	423
BsrI	ACTGG	1 cut(s)	126
BssMI	GATC	1 cut(s)	322
Bst6I	CTCTTC	1 cut(s)	237
BstBAI	YACGTR	1 cut(s)	376
BstC8I	GCNNGC	2 cut(s)	336, 424
BstDEI	CTNAG	2 cut(s)	438, 480
BstF5I	GGATG	2 cut(s)	385, 468
BstKTI	GATC	1 cut(s)	325
BstMAI	GTCTC	2 cut(s)	102, 241
BstMBI	GATC	1 cut(s)	322
BstMWI	GCNNNNNNNGC	2 cut(s)	419, 428
BstNSI	RCATGY	2 cut(s)	115, 338
BstPAI	GACNNNNGTC	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	203
BstX2I	RGATCY	1 cut(s)	322
BstXI	CCANNNNNNTGG	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	322
BsuRI	GGCC	1 cut(s)	443
BtsCI	GGATG	2 cut(s)	385, 468
Cac8I	GCNNGC	2 cut(s)	336, 424
CciI	TCATGA	1 cut(s)	70
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	305, 373
CviAII	CATG	5 cut(s)	71, 91, 112, 335, 427
CviJI	RGCY	6 cut(s)	216, 226, 431, 437, 443, 479
CviKI_1	RGCY	6 cut(s)	216, 226, 431, 437, 443, 479
CviQI	GTAC	2 cut(s)	305, 373
DdeI	CTNAG	2 cut(s)	438, 480
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
DraI	TTTAAA	2 cut(s)	234, 456
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco147I	AGGCCT	1 cut(s)	443
Eco57I	CTGAAG	2 cut(s)	116, 239
Eco88I	CYCGRG	1 cut(s)	432
Esp3I	CGTCTC	1 cut(s)	241
FaeI	CATG	5 cut(s)	74, 94, 115, 338, 430
FaiI	YATR	8 cut(s)	24, 72, 92, 113, 311, 336, 389, 428
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FatI	CATG	5 cut(s)	70, 90, 111, 334, 426
Fnu4HI	GCNGC	2 cut(s)	192, 414
FokI	GGATG	2 cut(s)	392, 455
Fsp4HI	GCNGC	2 cut(s)	192, 414
GluI	GCNGC	2 cut(s)	192, 414
GsaI	CCCAGC	1 cut(s)	220
HaeIII	GGCC	1 cut(s)	443
HapII	CCGG	1 cut(s)	98
HgaI	GACGC	1 cut(s)	64
Hin1II	CATG	5 cut(s)	74, 94, 115, 338, 430
HinfI	GANTC	3 cut(s)	34, 67, 86
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	162, 183
Hpy188I	TCNGA	2 cut(s)	173, 258
Hpy188III	TCNNGA	3 cut(s)	64, 71, 347
Hpy8I	GTNNAC	2 cut(s)	162, 183
HpyAV	CCTTC	1 cut(s)	140
HpyCH4IV	ACGT	2 cut(s)	303, 375
HpyCH4V	TGCA	1 cut(s)	94
HpyF10VI	GCNNNNNNNGC	2 cut(s)	419, 428
HpyF3I	CTNAG	2 cut(s)	438, 480
HpySE526I	ACGT	2 cut(s)	303, 375
Hsp92II	CATG	5 cut(s)	74, 94, 115, 338, 430
Kzo9I	GATC	1 cut(s)	322
LmnI	GCTCC	1 cut(s)	331
LpnPI	CCDG	7 cut(s)	44, 49, 107, 111, 198, 202, 332
Lsp1109I	GCAGC	1 cut(s)	203
LweI	GCATC	1 cut(s)	370
MaeII	ACGT	2 cut(s)	303, 375
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MboII	GAAGA	1 cut(s)	254
MfeI	CAATTG	1 cut(s)	288
MflI	RGATCY	1 cut(s)	322
MluCI	AATT	5 cut(s)	46, 166, 261, 288, 451
MlyI	GAGTC	1 cut(s)	95
MnlI	CCTC	4 cut(s)	95, 98, 359, 433
MseI	TTAA	4 cut(s)	51, 233, 264, 455
MslI	CAYNNNNRTG	1 cut(s)	473
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	99
MunI	CAATTG	1 cut(s)	288
Mva1269I	GAATGC	1 cut(s)	415
MwoI	GCNNNNNNNGC	2 cut(s)	419, 428
NciI	CCSGG	1 cut(s)	99
NdeII	GATC	1 cut(s)	322
NlaIII	CATG	5 cut(s)	74, 94, 115, 338, 430
NmuCI	GTSAC	1 cut(s)	299
NspI	RCATGY	2 cut(s)	115, 338
PaeI	GCATGC	1 cut(s)	338
PaeR7I	CTCGAG	1 cut(s)	432
PagI	TCATGA	1 cut(s)	70
PceI	AGGCCT	1 cut(s)	443
PcsI	WCGNNNNNNNCGW	1 cut(s)	430
PctI	GAATGC	1 cut(s)	415
PfeI	GAWTC	2 cut(s)	34, 67
PkrI	GCNGC	2 cut(s)	193, 415
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Ppu21I	YACGTR	1 cut(s)	376
PshAI	GACNNNNGTC	1 cut(s)	59
PspFI	CCCAGC	1 cut(s)	216
PspXI	VCTCGAGB	1 cut(s)	432
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	2 cut(s)	306, 374
RsaNI	GTAC	2 cut(s)	305, 373
RseI	CAYNNNNRTG	1 cut(s)	473
SaqAI	TTAA	4 cut(s)	51, 233, 264, 455
SatI	GCNGC	2 cut(s)	192, 414
Sau3AI	GATC	1 cut(s)	322
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	99
SetI	ASST	5 cut(s)	306, 310, 378, 439, 466
SfaNI	GCATC	1 cut(s)	370
Sfr274I	CTCGAG	1 cut(s)	432
SlaI	CTCGAG	1 cut(s)	432
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	1 cut(s)	432
SmoI	CTYRAG	1 cut(s)	432
SphI	GCATGC	1 cut(s)	338
Sse9I	AATT	5 cut(s)	46, 166, 261, 288, 451
SseBI	AGGCCT	1 cut(s)	443
SsiI	CCGC	1 cut(s)	413
StuI	AGGCCT	1 cut(s)	443
StyD4I	CCNGG	1 cut(s)	97
TaiI	ACGT	2 cut(s)	306, 378
TaqI	TCGA	1 cut(s)	433
TasI	AATT	5 cut(s)	46, 166, 261, 288, 451
TauI	GCSGC	1 cut(s)	416
TfiI	GAWTC	2 cut(s)	34, 67
Tru1I	TTAA	4 cut(s)	51, 233, 264, 455
Tru9I	TTAA	4 cut(s)	51, 233, 264, 455
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	2 cut(s)	17, 404
XapI	RAATTY	2 cut(s)	46, 451
XceI	RCATGY	2 cut(s)	115, 338
XhoI	CTCGAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.