Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0012775

Physical Location & Seq

Genomic Coordinates Reverse (-)

299132 .. 300003

Gene Structure 872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g00480.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCAACCGGGAGGAGGAGACATGCCCCAACTGGGTGTCCTTCAGCAGATAGAAAAGGATTTTGGTTCCTTTACTAATTTCAGAGAGAAGTTTACAGAAGCAGCACTTACACTATTTGGGTCTGGCTGGGTTTGGCTTGTTTTAAAGAGAGAAGAGAAACGACTTCAGATAATTAAAACTTCAAATGCCATTTGCCCAACTGTTTGGGGTGATGTACCTATAATCAGTTTGGATCTGTGGGAGCATGCTTATTATCTGGATTACAAGAATGACAGAGGAAAGTACGTGGATGCGTTTATGAACAATCTTGTGTCTTGGAATGCGGCAATGGCACGCCTGGCTCGAGCTGAGGCCTTTGTGAATTTAAACGAACCTAACATCCCTGTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

131

Amino Acids

14.78

Weight (kDa)

5.36

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23310
fragaria_vesca	FvH4_4g37110 FvH4_4g37110
malus_domestica	MD00G1043500.v1.1 MD13G1005800.v1.1 MD16G1002100.v1.1
prunus_persica	Prupe.1G347200_v2.0.a1 Prupe.1G347200_v2.0.a1
pyrus_communis	pycom13g00480 pycom16g00360
rosa_chinensis	RchiOBHm_Chr4g0446901
rosa_roxburghii	Rroxscaffold_5G00387240
rosa_rugosa	Rorug04G0375800
rosa_samantha	Rh4AG437000 Rh4BG446200 Rh4CG463500 Rh4DG444800
rosa_wichuraiana	Rw4G037390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	323
AclWI	GGATC	1 cut(s)	240
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	2 cut(s)	26, 149
AfaI	GTAC	2 cut(s)	216, 284
AfiI	CCNNNNNNNGG	2 cut(s)	14, 32
AgsI	TTSAA	1 cut(s)	183
AjnI	CCWGG	1 cut(s)	336
AjuI	GAANNNNNNNTTGG	2 cut(s)	45, 77
AloI	GAACNNNNNNTCC	1 cut(s)	363
AluBI	AGCT	1 cut(s)	347
AluI	AGCT	1 cut(s)	347
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	240
Ama87I	CYCGRG	1 cut(s)	342
AoxI	GGCC	1 cut(s)	351
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	361
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	342
BbvCI	CCTCAGC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	113
BciT130I	CCWGG	1 cut(s)	338
BcnI	CCSGG	1 cut(s)	9
BcoDI	GTCTC	1 cut(s)	12
BisI	GCNGC	2 cut(s)	102, 324
BlsI	GCNGC	2 cut(s)	103, 325
Bme1390I	CCNGG	2 cut(s)	9, 338
BmeT110I	CYCGRG	1 cut(s)	342
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	2 cut(s)	9, 338
BmrI	ACTGGG	1 cut(s)	41
BmsI	GCATC	1 cut(s)	280
BmuI	ACTGGG	1 cut(s)	41
Bpu10I	CCTNAGC	1 cut(s)	348
BpuMI	CCSGG	1 cut(s)	9
BsaAI	YACGTR	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 32
Bse1I	ACTGG	1 cut(s)	36
Bse3DI	GCAATG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	338
BseGI	GGATG	2 cut(s)	295, 378
BseLI	CCNNNNNNNGG	2 cut(s)	14, 32
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	2 cut(s)	27, 30
BseXI	GCAGC	1 cut(s)	113
BseYI	CCCAGC	1 cut(s)	126
BshFI	GGCC	1 cut(s)	353
BsiHKCI	CYCGRG	1 cut(s)	342
BsiSI	CCGG	1 cut(s)	8
BslI	CCNNNNNNNGG	2 cut(s)	14, 32
BsmAI	GTCTC	1 cut(s)	12
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	1 cut(s)	353
BsoBI	CYCGRG	1 cut(s)	342
Bsp143I	GATC	1 cut(s)	232
BspACI	CCGC	1 cut(s)	323
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	67
BspPI	GGATC	1 cut(s)	240
BsrDI	GCAATG	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	36
BssMI	GATC	1 cut(s)	232
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	147
BstBAI	YACGTR	1 cut(s)	286
BstC8I	GCNNGC	2 cut(s)	246, 334
BstDEI	CTNAG	2 cut(s)	348, 390
BstF5I	GGATG	2 cut(s)	295, 378
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 338
BstNI	CCWGG	1 cut(s)	338
BstNSI	RCATGY	2 cut(s)	25, 248
BstSCI	CCNGG	2 cut(s)	7, 336
BstV1I	GCAGC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	232
BstXI	CCANNNNNNTGG	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	353
BtsCI	GGATG	2 cut(s)	295, 378
Cac8I	GCNNGC	2 cut(s)	246, 334
Csp6I	GTAC	2 cut(s)	215, 283
CviAII	CATG	2 cut(s)	22, 245
CviJI	RGCY	6 cut(s)	126, 136, 341, 347, 353, 389
CviKI_1	RGCY	6 cut(s)	126, 136, 341, 347, 353, 389
CviQI	GTAC	2 cut(s)	215, 283
DdeI	CTNAG	2 cut(s)	348, 390
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
DraI	TTTAAA	2 cut(s)	144, 366
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco147I	AGGCCT	1 cut(s)	353
Eco57I	CTGAAG	2 cut(s)	26, 149
Eco88I	CYCGRG	1 cut(s)	342
EcoRII	CCWGG	1 cut(s)	336
FaeI	CATG	2 cut(s)	25, 248
FaiI	YATR	4 cut(s)	23, 221, 246, 299
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FatI	CATG	2 cut(s)	21, 244
Fnu4HI	GCNGC	2 cut(s)	102, 324
FokI	GGATG	2 cut(s)	302, 365
Fsp4HI	GCNGC	2 cut(s)	102, 324
GluI	GCNGC	2 cut(s)	102, 324
GsaI	CCCAGC	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	1 cut(s)	8
Hin1II	CATG	2 cut(s)	25, 248
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188I	TCNGA	2 cut(s)	83, 168
Hpy188III	TCNNGA	1 cut(s)	257
Hpy8I	GTNNAC	1 cut(s)	93
HpyAV	CCTTC	1 cut(s)	50
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 338
HpyF3I	CTNAG	2 cut(s)	348, 390
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	25, 248
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	7 cut(s)	17, 21, 108, 112, 242, 323, 350
Lsp1109I	GCAGC	1 cut(s)	113
LweI	GCATC	1 cut(s)	280
MaeII	ACGT	1 cut(s)	285
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	1 cut(s)	164
MflI	RGATCY	1 cut(s)	232
MluCI	AATT	3 cut(s)	76, 171, 361
MnlI	CCTC	4 cut(s)	5, 8, 269, 343
MseI	TTAA	3 cut(s)	143, 174, 365
MslI	CAYNNNNRTG	1 cut(s)	383
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	2 cut(s)	9, 338
Mva1269I	GAATGC	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	2 cut(s)	329, 338
NciI	CCSGG	1 cut(s)	9
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	2 cut(s)	25, 248
NlaIV	GGNNCC	1 cut(s)	67
NspI	RCATGY	2 cut(s)	25, 248
PaeI	GCATGC	1 cut(s)	248
PaeR7I	CTCGAG	1 cut(s)	342
PceI	AGGCCT	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	1 cut(s)	340
PctI	GAATGC	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	103, 325
Ppu21I	YACGTR	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	336
PspFI	CCCAGC	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	336
PspN4I	GGNNCC	1 cut(s)	67
PspXI	VCTCGAGB	1 cut(s)	342
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	2 cut(s)	216, 284
RsaNI	GTAC	2 cut(s)	215, 283
RseI	CAYNNNNRTG	1 cut(s)	383
SaqAI	TTAA	3 cut(s)	143, 174, 365
SatI	GCNGC	2 cut(s)	102, 324
Sau3AI	GATC	1 cut(s)	232
ScrFI	CCNGG	2 cut(s)	9, 338
SetI	ASST	4 cut(s)	220, 288, 349, 376
SfaNI	GCATC	1 cut(s)	280
Sfr274I	CTCGAG	1 cut(s)	342
SlaI	CTCGAG	1 cut(s)	342
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	342
SmoI	CTYRAG	1 cut(s)	342
SphI	GCATGC	1 cut(s)	248
Sse9I	AATT	3 cut(s)	76, 171, 361
SseBI	AGGCCT	1 cut(s)	353
SsiI	CCGC	1 cut(s)	323
StuI	AGGCCT	1 cut(s)	353
StyD4I	CCNGG	2 cut(s)	7, 336
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	1 cut(s)	343
TasI	AATT	3 cut(s)	76, 171, 361
TauI	GCSGC	1 cut(s)	326
Tru1I	TTAA	3 cut(s)	143, 174, 365
Tru9I	TTAA	3 cut(s)	143, 174, 365
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	314
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	2 cut(s)	25, 248
XhoI	CTCGAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.