Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012775

Physical Location & Seq

Genomic Coordinates Forward (+)

32456501 .. 32460662

Gene Structure 4162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G347200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGATACTCTGCCCTTCAGCTCCGAGCCCTCATCTTTTATCGACCGACTTTTCTCAGTCTTTCAAGAGTCCCATACTCCCTCATCCGTGTACGCAGCAGAGAAGATGGCCCGACTGGTCTCAAAGAGCTTCTAAAGTTGTTGCTTACTATGGCTTGAAGAAACCTCCTTATAAATTTGATGCTTTGGAGCCCTATATGAGTCAGAGGACACTGGAAGTTCATTGGGGAGGCCATCATCGTAACTATGTGGAAGGTTTGAACAAACAGCTGGAGAAGAATGACATACTATATGGCTATAGTTTTGATGAACTTGTCAAAGCAACATATAATAATGGGAATCCTTTACCTGAATTCAACAACGCTGCTCAGGTCTGGAATCATGACTTTTTTTGGGAATCCATGCAACCTGGAGGCGGGGACATACCCAAACTAGGCGTCCTTCAGCAGATTGAAAAGGATTTTGGTTCCTTTACAAATTTCAGAGAGAAGTTTGTAGAGGCAGCACTTACAATATTTGGCTCGGGCTGGGTTTGGCTTGTTTTGAAGAGAGAAGAGAGACAGCTTAAGATAATTAAAACTTCAAATGCCATTTGCCCACTCGTCTGGGATGACATACCCATAATCAGTTTGGATCTCTGGGAGCATGCTTATTATCTGGATTACAAGAATGACAGAGGGAAGTATGTGGATGTATTTATGAACCATCTTGTGTCTTGGAATGCGGCAATGGCACGCATGGCCCGAGCAGAGGCCTTTGTGAATTTAGGGGAACCTAATATCCCTGTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

264

Amino Acids

30.4

Weight (kDa)

6.45

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23310
fragaria_vesca	FvH4_4g37110 FvH4_4g37110
malus_domestica	MD00G1043500.v1.1 MD13G1005800.v1.1 MD16G1002100.v1.1
prunus_persica	Prupe.1G347200_v2.0.a1 Prupe.1G347200_v2.0.a1
pyrus_communis	pycom13g00480 pycom16g00360
rosa_chinensis	RchiOBHm_Chr4g0446901
rosa_roxburghii	Rroxscaffold_5G00387240
rosa_rugosa	Rorug04G0375800
rosa_samantha	Rh4AG437000 Rh4BG446200 Rh4CG463500 Rh4DG444800
rosa_wichuraiana	Rw4G037390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	171
AciI	CCGC	2 cut(s)	414, 722
AclWI	GGATC	1 cut(s)	639
AcsI	RAATTY	4 cut(s)	173, 350, 475, 760
AcuI	CTGAAG	1 cut(s)	425
AcyI	GRCGYC	1 cut(s)	435
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	3 cut(s)	413, 431, 748
AflII	CTTAAG	1 cut(s)	563
AgsI	TTSAA	7 cut(s)	64, 157, 259, 355, 452, 544, 582
AjnI	CCWGG	1 cut(s)	406
AjuI	GAANNNNNNNTTGG	2 cut(s)	444, 476
AloI	GAACNNNNNNTCC	1 cut(s)	762
AluBI	AGCT	4 cut(s)	20, 128, 268, 562
AluI	AGCT	4 cut(s)	20, 128, 268, 562
Alw26I	GTCTC	2 cut(s)	123, 550
AlwI	GGATC	1 cut(s)	639
Ama87I	CYCGRG	2 cut(s)	520, 741
AoxI	GGCC	4 cut(s)	107, 229, 738, 750
ApeKI	GCWGC	3 cut(s)	94, 362, 500
ApoI	RAATTY	4 cut(s)	173, 350, 475, 760
ArsI	GACNNNNNNTTYG	2 cut(s)	420, 452
AspS9I	GGNCC	2 cut(s)	108, 739
AvaI	CYCGRG	2 cut(s)	520, 741
BanII	GRGCYC	2 cut(s)	29, 192
BbvI	GCAGC	3 cut(s)	106, 349, 512
BccI	CCATC	3 cut(s)	99, 240, 711
BciT130I	CCWGG	1 cut(s)	408
BcoDI	GTCTC	2 cut(s)	123, 550
BfaI	CTAG	1 cut(s)	431
BfmI	CTRYAG	1 cut(s)	295
BfrI	CTTAAG	1 cut(s)	563
BisI	GCNGC	4 cut(s)	95, 363, 501, 723
BlsI	GCNGC	4 cut(s)	96, 364, 502, 724
Bme1390I	CCNGG	1 cut(s)	408
BmeT110I	CYCGRG	2 cut(s)	520, 741
BmgT120I	GGNCC	2 cut(s)	108, 739
BmiI	GGNNCC	3 cut(s)	189, 466, 771
BmrFI	CCNGG	1 cut(s)	408
BmsI	GCATC	1 cut(s)	169
BpmI	CTGGAG	2 cut(s)	290, 429
Bpu10I	CCTNAGC	1 cut(s)	366
BsaHI	GRCGYC	1 cut(s)	435
BsaI	GGTCTC	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	3 cut(s)	413, 431, 748
Bse1I	ACTGG	2 cut(s)	119, 216
Bse3DI	GCAATG	1 cut(s)	732
BseBI	CCWGG	1 cut(s)	408
BseGI	GGATG	3 cut(s)	82, 613, 694
BseLI	CCNNNNNNNGG	3 cut(s)	413, 431, 748
BseMI	GCAATG	1 cut(s)	732
BseMII	CTCAG	2 cut(s)	68, 380
BseNI	ACTGG	2 cut(s)	119, 216
BseXI	GCAGC	3 cut(s)	106, 349, 512
BseYI	CCCAGC	1 cut(s)	525
Bsh1285I	CGRYCG	1 cut(s)	45
BshFI	GGCC	4 cut(s)	109, 231, 740, 752
BsiEI	CGRYCG	1 cut(s)	45
BsiHKCI	CYCGRG	2 cut(s)	520, 741
BslFI	GGGAC	2 cut(s)	54, 431
BslI	CCNNNNNNNGG	3 cut(s)	413, 431, 748
BsmAI	GTCTC	2 cut(s)	123, 550
BsmFI	GGGAC	2 cut(s)	54, 431
BsmI	GAATGC	1 cut(s)	724
BsnI	GGCC	4 cut(s)	109, 231, 740, 752
Bso31I	GGTCTC	1 cut(s)	123
BsoBI	CYCGRG	2 cut(s)	520, 741
Bsp1286I	GDGCHC	2 cut(s)	29, 192
Bsp143I	GATC	1 cut(s)	631
BspACI	CCGC	2 cut(s)	414, 722
BspANI	GGCC	4 cut(s)	109, 231, 740, 752
BspCNI	CTCAG	2 cut(s)	67, 379
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	3 cut(s)	189, 466, 771
BspPI	GGATC	1 cut(s)	639
BspTI	CTTAAG	1 cut(s)	563
BspTNI	GGTCTC	1 cut(s)	123
BsrDI	GCAATG	1 cut(s)	732
BsrI	ACTGG	2 cut(s)	119, 216
BssMI	GATC	1 cut(s)	631
BssNI	GRCGYC	1 cut(s)	435
Bst2UI	CCWGG	1 cut(s)	408
Bst6I	CTCTTC	2 cut(s)	539, 546
BstACI	GRCGYC	1 cut(s)	435
BstAFI	CTTAAG	1 cut(s)	563
BstC8I	GCNNGC	2 cut(s)	645, 733
BstDEI	CTNAG	2 cut(s)	54, 366
BstF5I	GGATG	3 cut(s)	82, 613, 694
BstKTI	GATC	1 cut(s)	634
BstMAI	GTCTC	2 cut(s)	123, 550
BstMBI	GATC	1 cut(s)	631
BstMCI	CGRYCG	1 cut(s)	45
BstMWI	GCNNNNNNNGC	2 cut(s)	728, 737
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	1 cut(s)	647
BstSCI	CCNGG	1 cut(s)	406
BstSFI	CTRYAG	1 cut(s)	295
BstV1I	GCAGC	3 cut(s)	106, 349, 512
BstX2I	RGATCY	1 cut(s)	631
BstXI	CCANNNNNNTGG	1 cut(s)	603
BstYI	RGATCY	1 cut(s)	631
BsuRI	GGCC	4 cut(s)	109, 231, 740, 752
BtsCI	GGATG	3 cut(s)	82, 613, 694
BtsIMutI	CAGTG	1 cut(s)	209
Cac8I	GCNNGC	2 cut(s)	645, 733
CciI	TCATGA	1 cut(s)	379
Cfr13I	GGNCC	2 cut(s)	108, 739
CseI	GACGC	1 cut(s)	424
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	4 cut(s)	380, 400, 644, 736
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	2 cut(s)	54, 366
DpnI	GATC	1 cut(s)	633
DpnII	GATC	1 cut(s)	631
Eam1104I	CTCTTC	2 cut(s)	539, 546
EarI	CTCTTC	2 cut(s)	539, 546
Eco147I	AGGCCT	1 cut(s)	752
Eco24I	GRGCYC	2 cut(s)	29, 192
Eco31I	GGTCTC	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	425
Eco88I	CYCGRG	2 cut(s)	520, 741
EcoRI	GAATTC	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	406
EcoT38I	GRGCYC	2 cut(s)	29, 192
FaeI	CATG	4 cut(s)	383, 403, 647, 739
FaqI	GGGAC	2 cut(s)	54, 431
FatI	CATG	4 cut(s)	379, 399, 643, 735
FauI	CCCGC	1 cut(s)	407
Fnu4HI	GCNGC	4 cut(s)	95, 363, 501, 723
FokI	GGATG	3 cut(s)	69, 620, 701
FriOI	GRGCYC	2 cut(s)	29, 192
Fsp4HI	GCNGC	4 cut(s)	95, 363, 501, 723
FspBI	CTAG	1 cut(s)	431
GluI	GCNGC	4 cut(s)	95, 363, 501, 723
GsaI	CCCAGC	1 cut(s)	529
GsuI	CTGGAG	2 cut(s)	290, 429
HaeIII	GGCC	4 cut(s)	109, 231, 740, 752
HgaI	GACGC	1 cut(s)	424
Hin1I	GRCGYC	1 cut(s)	435
Hin1II	CATG	4 cut(s)	383, 403, 647, 739
HinfI	GANTC	5 cut(s)	67, 199, 337, 376, 395
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	3 cut(s)	24, 204, 482
Hpy188III	TCNNGA	4 cut(s)	64, 373, 380, 656
Hpy8I	GTNNAC	1 cut(s)	90
HpyAV	CCTTC	3 cut(s)	24, 245, 449
HpyCH4V	TGCA	1 cut(s)	403
HpyF10VI	GCNNNNNNNGC	2 cut(s)	728, 737
HpyF3I	CTNAG	2 cut(s)	54, 366
Hsp92I	GRCGYC	1 cut(s)	435
Hsp92II	CATG	4 cut(s)	383, 403, 647, 739
Kzo9I	GATC	1 cut(s)	631
LmnI	GCTCC	3 cut(s)	25, 187, 640
Lsp1109I	GCAGC	3 cut(s)	106, 349, 512
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	431
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	1 cut(s)	633
MboI	GATC	1 cut(s)	631
MboII	GAAGA	5 cut(s)	114, 169, 286, 556, 563
MflI	RGATCY	1 cut(s)	631
MhlI	GDGCHC	2 cut(s)	29, 192
MluCI	AATT	5 cut(s)	173, 350, 475, 570, 760
MlyI	GAGTC	2 cut(s)	76, 208
MnlI	CCTC	9 cut(s)	39, 90, 174, 198, 221, 404, 490, 668, 742
MseI	TTAA	3 cut(s)	564, 573, 790
MspA1I	CMGCKG	1 cut(s)	268
MspCI	CTTAAG	1 cut(s)	563
MspR9I	CCNGG	1 cut(s)	408
Mva1269I	GAATGC	1 cut(s)	724
MvaI	CCWGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	2 cut(s)	728, 737
NdeII	GATC	1 cut(s)	631
NlaIII	CATG	4 cut(s)	383, 403, 647, 739
NlaIV	GGNNCC	3 cut(s)	189, 466, 771
NspI	RCATGY	1 cut(s)	647
PaeI	GCATGC	1 cut(s)	647
PagI	TCATGA	1 cut(s)	379
PceI	AGGCCT	1 cut(s)	752
PcsI	WCGNNNNNNNCGW	1 cut(s)	739
PctI	GAATGC	1 cut(s)	724
PfeI	GAWTC	3 cut(s)	337, 376, 395
PkrI	GCNGC	4 cut(s)	96, 364, 502, 724
PleI	GAGTC	2 cut(s)	75, 207
PpsI	GAGTC	2 cut(s)	75, 207
PsiI	TTATAA	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	406
PspFI	CCCAGC	1 cut(s)	525
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	3 cut(s)	189, 466, 771
PspPI	GGNCC	2 cut(s)	108, 739
PsuI	RGATCY	1 cut(s)	631
PvuII	CAGCTG	1 cut(s)	268
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
SaqAI	TTAA	3 cut(s)	564, 573, 790
SatI	GCNGC	4 cut(s)	95, 363, 501, 723
Sau3AI	GATC	1 cut(s)	631
Sau96I	GGNCC	2 cut(s)	108, 739
SchI	GAGTC	2 cut(s)	76, 208
ScrFI	CCNGG	1 cut(s)	408
SduI	GDGCHC	2 cut(s)	29, 192
SfaNI	GCATC	1 cut(s)	169
SfcI	CTRYAG	1 cut(s)	295
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
SphI	GCATGC	1 cut(s)	647
Sse9I	AATT	5 cut(s)	173, 350, 475, 570, 760
SseBI	AGGCCT	1 cut(s)	752
SsiI	CCGC	2 cut(s)	414, 722
SspI	AATATT	1 cut(s)	513
SspMI	CTAG	1 cut(s)	431
StuI	AGGCCT	1 cut(s)	752
StyD4I	CCNGG	1 cut(s)	406
TaqI	TCGA	1 cut(s)	41
TaqII	GACCGA	1 cut(s)	59
TasI	AATT	5 cut(s)	173, 350, 475, 570, 760
TauI	GCSGC	1 cut(s)	725
TfiI	GAWTC	3 cut(s)	337, 376, 395
Tru1I	TTAA	3 cut(s)	564, 573, 790
Tru9I	TTAA	3 cut(s)	564, 573, 790
TscAI	CASTG	1 cut(s)	216
TseI	GCWGC	3 cut(s)	94, 362, 500
TspDTI	ATGAA	3 cut(s)	209, 321, 713
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	216
Vha464I	CTTAAG	1 cut(s)	563
XapI	RAATTY	4 cut(s)	173, 350, 475, 760
XceI	RCATGY	1 cut(s)	647
XcmI	CCANNNNNNNNNTGG	1 cut(s)	625
XspI	CTAG	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.