Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0012775

Physical Location & Seq

Genomic Coordinates Forward (+)

139464 .. 142615

Gene Structure 3152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1002100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGATGCTCTGTTTTTCTAGTCCTTCACCTCCAAGCTCTCACCTTTTATTGACTGAATTTTCTCACTCTTTTAAGAGTTCCCAGCTTCCTCTTCCGTGTAAGCAGCAGAAAAGACAGCCCGATGGGTCTCCAAGAGCTTCTAGAGTTGTCGGTTACTATGGATTGAAAAACCCTCCCTATAAACTTGATGCTTTGGAGCCTTATATGAGTCAGAGAACATTGGAAGTTCACTGGGGAGGCCATCATCGAAACTATGTGGAAGGTCTGAACAAACAGCTGGAGAAGAGTGACGTACTATATGGCTACACTTTCGATGAACTTGTCAAAGCAACTTATAATAATGGGAATCCTTTGCCTGAATTTAACAACGCTGCTCAGGTGTGGAATCATGACTTCTTTTGGGAGTCCATGCAACCGGGAGGAGGAGAGATGCCCCAACTGGGTGTCCTTCAGCAGATAGAAAAGGATTTTGGTTCCTTTTCAAACTTCAGAGAGAAGTTTACAGAAGCAGCACTTACGCTATTTGGCTCTGGCTGGGTTTGGCTTGTTTTAAAGAGAGAAGAGAGACGACTTCAGATAATTAAAACTTCGAATGCCATTTGCCCAATTGTTTGGGATGACATACCAATAATCAGTTTGGATCTTTGGGAGCATGCTTATTATCTGGATTTCAAGAATGACAGGGGAAAGTACGTGGATACGTTTATGAATCATCTTGTGTCTTGGAATGCGGCAATGGCACGCATGGCTCGAGCTGAGGCCTTTGTGAATTTAAACGAACCTAACATCCCTGTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

267

Amino Acids

30.6

Weight (kDa)

6.25

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	53 - 137	7.9e-19	Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C	PF02777	149 - 247	5.9e-35	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23310
fragaria_vesca	FvH4_4g37110 FvH4_4g37110
malus_domestica	MD00G1043500.v1.1 MD13G1005800.v1.1 MD16G1002100.v1.1
prunus_persica	Prupe.1G347200_v2.0.a1 Prupe.1G347200_v2.0.a1
pyrus_communis	pycom13g00480 pycom16g00360
rosa_chinensis	RchiOBHm_Chr4g0446901
rosa_roxburghii	Rroxscaffold_5G00387240
rosa_rugosa	Rorug04G0375800
rosa_samantha	Rh4AG437000 Rh4BG446200 Rh4CG463500 Rh4DG444800
rosa_wichuraiana	Rw4G037390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	336
AciI	CCGC	1 cut(s)	731
AclWI	GGATC	1 cut(s)	648
AcsI	RAATTY	3 cut(s)	56, 359, 769
AcuI	CTGAAG	3 cut(s)	434, 472, 557
AfaI	GTAC	2 cut(s)	294, 692
AfiI	CCNNNNNNNGG	2 cut(s)	422, 440
AgsI	TTSAA	3 cut(s)	166, 483, 673
AjuI	GAANNNNNNNTTGG	2 cut(s)	453, 485
AloI	GAACNNNNNNTCC	1 cut(s)	771
AluBI	AGCT	5 cut(s)	36, 85, 137, 277, 755
AluI	AGCT	5 cut(s)	36, 85, 137, 277, 755
Alw26I	GTCTC	2 cut(s)	132, 559
AlwI	GGATC	1 cut(s)	648
Ama87I	CYCGRG	1 cut(s)	750
AoxI	GGCC	2 cut(s)	238, 759
ApeKI	GCWGC	3 cut(s)	103, 371, 509
ApoI	RAATTY	3 cut(s)	56, 359, 769
AsuC2I	CCSGG	1 cut(s)	417
AsuHPI	GGTGA	2 cut(s)	18, 32
AsuII	TTCGAA	1 cut(s)	590
AvaI	CYCGRG	1 cut(s)	750
BbvCI	CCTCAGC	1 cut(s)	756
BbvI	GCAGC	3 cut(s)	115, 358, 521
BccI	CCATC	2 cut(s)	116, 249
BciVI	GTATCC	1 cut(s)	691
BcnI	CCSGG	1 cut(s)	417
BcoDI	GTCTC	2 cut(s)	132, 559
BfaI	CTAG	2 cut(s)	18, 141
BfuI	GTATCC	1 cut(s)	691
BisI	GCNGC	4 cut(s)	104, 372, 510, 732
BlsI	GCNGC	4 cut(s)	105, 373, 511, 733
Bme1390I	CCNGG	1 cut(s)	417
BmeT110I	CYCGRG	1 cut(s)	750
BmiI	GGNNCC	2 cut(s)	198, 475
BmrFI	CCNGG	1 cut(s)	417
BmrI	ACTGGG	2 cut(s)	241, 449
BmsI	GCATC	2 cut(s)	178, 420
BmuI	ACTGGG	2 cut(s)	241, 449
BpmI	CTGGAG	1 cut(s)	299
Bpu10I	CCTNAGC	2 cut(s)	375, 756
Bpu14I	TTCGAA	1 cut(s)	590
BpuMI	CCSGG	1 cut(s)	417
BsaAI	YACGTR	1 cut(s)	694
BsaI	GGTCTC	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	2 cut(s)	422, 440
Bse1I	ACTGG	2 cut(s)	236, 444
Bse3DI	GCAATG	1 cut(s)	741
BseGI	GGATG	2 cut(s)	622, 786
BseLI	CCNNNNNNNGG	2 cut(s)	422, 440
BseMI	GCAATG	1 cut(s)	741
BseMII	CTCAG	2 cut(s)	389, 747
BseNI	ACTGG	2 cut(s)	236, 444
BseRI	GAGGAG	2 cut(s)	435, 438
BseXI	GCAGC	3 cut(s)	115, 358, 521
BseYI	CCCAGC	2 cut(s)	81, 534
BshFI	GGCC	2 cut(s)	240, 761
BsiHKCI	CYCGRG	1 cut(s)	750
BsiSI	CCGG	1 cut(s)	416
BslI	CCNNNNNNNGG	2 cut(s)	422, 440
BsmAI	GTCTC	2 cut(s)	132, 559
BsmBI	CGTCTC	1 cut(s)	559
BsmI	GAATGC	2 cut(s)	598, 733
BsnI	GGCC	2 cut(s)	240, 761
Bso31I	GGTCTC	1 cut(s)	132
BsoBI	CYCGRG	1 cut(s)	750
Bsp119I	TTCGAA	1 cut(s)	590
Bsp143I	GATC	1 cut(s)	640
BspACI	CCGC	1 cut(s)	731
BspANI	GGCC	2 cut(s)	240, 761
BspCNI	CTCAG	2 cut(s)	388, 748
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	2 cut(s)	198, 475
BspPI	GGATC	1 cut(s)	648
BspT104I	TTCGAA	1 cut(s)	590
BspTNI	GGTCTC	1 cut(s)	132
BsrDI	GCAATG	1 cut(s)	741
BsrI	ACTGG	2 cut(s)	236, 444
BssMI	GATC	1 cut(s)	640
Bst6I	CTCTTC	3 cut(s)	96, 278, 555
BstBAI	YACGTR	1 cut(s)	694
BstBI	TTCGAA	1 cut(s)	590
BstC8I	GCNNGC	2 cut(s)	654, 742
BstDEI	CTNAG	2 cut(s)	375, 756
BstF5I	GGATG	2 cut(s)	622, 786
BstKTI	GATC	1 cut(s)	643
BstMAI	GTCTC	2 cut(s)	132, 559
BstMBI	GATC	1 cut(s)	640
BstMWI	GCNNNNNNNGC	2 cut(s)	737, 746
BstNSI	RCATGY	1 cut(s)	656
BstSCI	CCNGG	1 cut(s)	415
BstV1I	GCAGC	3 cut(s)	115, 358, 521
BstX2I	RGATCY	1 cut(s)	640
BstXI	CCANNNNNNTGG	1 cut(s)	612
BstYI	RGATCY	1 cut(s)	640
BsuI	GTATCC	1 cut(s)	691
BsuRI	GGCC	2 cut(s)	240, 761
BtsCI	GGATG	2 cut(s)	622, 786
BtsIMutI	CAGTG	1 cut(s)	229
Cac8I	GCNNGC	2 cut(s)	654, 742
CciI	TCATGA	1 cut(s)	388
Csp6I	GTAC	2 cut(s)	293, 691
CviAII	CATG	4 cut(s)	389, 409, 653, 745
CviQI	GTAC	2 cut(s)	293, 691
DdeI	CTNAG	2 cut(s)	375, 756
DpnI	GATC	1 cut(s)	642
DpnII	GATC	1 cut(s)	640
DraI	TTTAAA	2 cut(s)	552, 774
Eam1104I	CTCTTC	3 cut(s)	96, 278, 555
EarI	CTCTTC	3 cut(s)	96, 278, 555
Eco147I	AGGCCT	1 cut(s)	761
Eco31I	GGTCTC	1 cut(s)	132
Eco57I	CTGAAG	3 cut(s)	434, 472, 557
Eco88I	CYCGRG	1 cut(s)	750
Esp3I	CGTCTC	1 cut(s)	559
FaeI	CATG	4 cut(s)	392, 412, 656, 748
FalI	AAGNNNNNCTT	2 cut(s)	498, 530
FatI	CATG	4 cut(s)	388, 408, 652, 744
Fnu4HI	GCNGC	4 cut(s)	104, 372, 510, 732
FokI	GGATG	2 cut(s)	629, 773
Fsp4HI	GCNGC	4 cut(s)	104, 372, 510, 732
FspBI	CTAG	2 cut(s)	18, 141
GluI	GCNGC	4 cut(s)	104, 372, 510, 732
GsaI	CCCAGC	2 cut(s)	85, 538
GsuI	CTGGAG	1 cut(s)	299
HaeIII	GGCC	2 cut(s)	240, 761
HapII	CCGG	1 cut(s)	416
Hin1II	CATG	4 cut(s)	392, 412, 656, 748
HinfI	GANTC	5 cut(s)	208, 346, 385, 404, 709
HpaII	CCGG	1 cut(s)	416
HphI	GGTGA	2 cut(s)	18, 32
Hpy166II	GTNNAC	2 cut(s)	229, 501
Hpy188I	TCNGA	4 cut(s)	213, 267, 491, 576
Hpy188III	TCNNGA	4 cut(s)	141, 389, 665, 673
Hpy8I	GTNNAC	2 cut(s)	229, 501
HpyAV	CCTTC	3 cut(s)	33, 254, 458
HpyCH4IV	ACGT	3 cut(s)	291, 693, 701
HpyCH4V	TGCA	1 cut(s)	412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	737, 746
HpyF3I	CTNAG	2 cut(s)	375, 756
HpySE526I	ACGT	3 cut(s)	291, 693, 701
Hsp92II	CATG	4 cut(s)	392, 412, 656, 748
Kzo9I	GATC	1 cut(s)	640
LmnI	GCTCC	2 cut(s)	196, 649
Lsp1109I	GCAGC	3 cut(s)	115, 358, 521
LweI	GCATC	2 cut(s)	178, 420
MaeI	CTAG	2 cut(s)	18, 141
MaeII	ACGT	3 cut(s)	291, 693, 701
MaeIII	GTNAC	2 cut(s)	152, 287
MalI	GATC	1 cut(s)	642
MboI	GATC	1 cut(s)	640
MboII	GAAGA	3 cut(s)	83, 295, 572
MfeI	CAATTG	1 cut(s)	606
MflI	RGATCY	1 cut(s)	640
MluCI	AATT	5 cut(s)	56, 359, 579, 606, 769
MlyI	GAGTC	2 cut(s)	217, 413
MnlI	CCTC	7 cut(s)	39, 99, 183, 230, 413, 416, 751
MseI	TTAA	6 cut(s)	72, 363, 551, 582, 773, 799
MslI	CAYNNNNRTG	1 cut(s)	791
MspA1I	CMGCKG	1 cut(s)	277
MspI	CCGG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	417
MunI	CAATTG	1 cut(s)	606
Mva1269I	GAATGC	2 cut(s)	598, 733
MwoI	GCNNNNNNNGC	2 cut(s)	737, 746
NciI	CCSGG	1 cut(s)	417
NdeII	GATC	1 cut(s)	640
NlaIII	CATG	4 cut(s)	392, 412, 656, 748
NlaIV	GGNNCC	2 cut(s)	198, 475
NmuCI	GTSAC	1 cut(s)	287
NspI	RCATGY	1 cut(s)	656
NspV	TTCGAA	1 cut(s)	590
PaeI	GCATGC	1 cut(s)	656
PaeR7I	CTCGAG	1 cut(s)	750
PagI	TCATGA	1 cut(s)	388
PceI	AGGCCT	1 cut(s)	761
PcsI	WCGNNNNNNNCGW	1 cut(s)	748
PctI	GAATGC	2 cut(s)	598, 733
PfeI	GAWTC	3 cut(s)	346, 385, 709
PkrI	GCNGC	4 cut(s)	105, 373, 511, 733
PleI	GAGTC	2 cut(s)	216, 412
PpsI	GAGTC	2 cut(s)	216, 412
Ppu21I	YACGTR	1 cut(s)	694
PsiI	TTATAA	1 cut(s)	336
PspFI	CCCAGC	2 cut(s)	81, 534
PspN4I	GGNNCC	2 cut(s)	198, 475
PspXI	VCTCGAGB	1 cut(s)	750
PsuI	RGATCY	1 cut(s)	640
PvuII	CAGCTG	1 cut(s)	277
RsaI	GTAC	2 cut(s)	294, 692
RsaNI	GTAC	2 cut(s)	293, 691
RseI	CAYNNNNRTG	1 cut(s)	791
SaqAI	TTAA	6 cut(s)	72, 363, 551, 582, 773, 799
SatI	GCNGC	4 cut(s)	104, 372, 510, 732
Sau3AI	GATC	1 cut(s)	640
SchI	GAGTC	2 cut(s)	217, 413
ScrFI	CCNGG	1 cut(s)	417
SfaNI	GCATC	2 cut(s)	178, 420
Sfr274I	CTCGAG	1 cut(s)	750
SfuI	TTCGAA	1 cut(s)	590
SlaI	CTCGAG	1 cut(s)	750
SmiMI	CAYNNNNRTG	1 cut(s)	791
SmlI	CTYRAG	1 cut(s)	750
SmoI	CTYRAG	1 cut(s)	750
SphI	GCATGC	1 cut(s)	656
Sse9I	AATT	5 cut(s)	56, 359, 579, 606, 769
SseBI	AGGCCT	1 cut(s)	761
SsiI	CCGC	1 cut(s)	731
SspMI	CTAG	2 cut(s)	18, 141
StuI	AGGCCT	1 cut(s)	761
StyD4I	CCNGG	1 cut(s)	415
TaiI	ACGT	3 cut(s)	294, 696, 704
TaqI	TCGA	4 cut(s)	247, 312, 590, 751
TasI	AATT	5 cut(s)	56, 359, 579, 606, 769
TauI	GCSGC	1 cut(s)	734
TfiI	GAWTC	3 cut(s)	346, 385, 709
Tru1I	TTAA	6 cut(s)	72, 363, 551, 582, 773, 799
Tru9I	TTAA	6 cut(s)	72, 363, 551, 582, 773, 799
TscAI	CASTG	1 cut(s)	236
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	3 cut(s)	103, 371, 509
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	2 cut(s)	330, 722
TspGWI	ACGGA	1 cut(s)	84
TspRI	CASTG	1 cut(s)	236
XapI	RAATTY	3 cut(s)	56, 359, 769
XbaI	TCTAGA	1 cut(s)	140
XceI	RCATGY	1 cut(s)	656
XhoI	CTCGAG	1 cut(s)	750
XspI	CTAG	2 cut(s)	18, 141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.