Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0012775

Physical Location & Seq

Genomic Coordinates Forward (+)

64014821 .. 64017595

Gene Structure 2775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G037390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTTATCCTCTTCTTCTCCTCCAAGCTCTCATCTTTTGTTGACTCACTCTTCTCACTGTTTTAAGACTCCCAACCTTTCTCATCATCAGTGTAAGAAGCAGAAAAGATGGACCCATGGGTCACAGAGAGCTTCTAGAGTTGTTGCTTACTATGGCTTGAAGGAACCACCTTATAAACTTGATGCTTTGGAACCCTATATGAGTCAGAGGACATTGGAGGTTCACTGGGGAGGCCATCATCGTAACTACTTGGAAGGTTTGAACAAACAGCTAGAGAAGAGTGACATACTGTATGGCTACACTTTTGATGAACTTGTCAAAGCAACATATAATAATGGGAATCCCTTACCAGAATTTAACAACGCTGCCCAGGTCTGGAATCATGACTTCTTTTGGGAATCCATGCAACCTGGAGGAGGGGACATGCCCAAACTAGGTGTACTTGAGCAGATTGAAAAGGATTTTGGTTCCTATACAAGTTTCAGAGAGAAGTTTATAGAGGCAGCGCTAACTCTATTTGGCTCAGGCTGGGTTTGGCTTGTTTTAAAGAGAGAAGAGAGACAACTCAAGATAGTTAGAACTTCAAATGCCATTTGCCCACTTGTCTGGGATGACATACCGATAATCTGTTTGGATATGTGGGAGCATGCTTATTATCTGGATTACAAGAATGAGAGAGGAAAGTATGTGGATGCATTTATGAACCATCTTGTGTCTTGGAATGCGGCAATGGTGCGCATGGCCCGTGCTGAGGCGTTTGTGAATTTAGGCGAACCTAATATCCCTGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04013 ko04068 ko04146 ko04211 ko04212 ko04213 ko05016 map04013 map04068 map04146 map04211 map04212 map04213 map05016

Pfam Domains

Protein Families

Sod_Fe_C Sod_Fe_N

Protein Analysis

264

Amino Acids

30.53

Weight (kDa)

6.86

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Fe_N	PF00081	51 - 135	5.3e-18	Iron/manganese superoxide dismutases, alpha-hairpin domain
Sod_Fe_C	PF02777	147 - 243	2.6e-35	Iron/manganese superoxide dismutases, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23310
fragaria_vesca	FvH4_4g37110 FvH4_4g37110
malus_domestica	MD00G1043500.v1.1 MD13G1005800.v1.1 MD16G1002100.v1.1
prunus_persica	Prupe.1G347200_v2.0.a1 Prupe.1G347200_v2.0.a1
pyrus_communis	pycom13g00480 pycom16g00360
rosa_chinensis	RchiOBHm_Chr4g0446901
rosa_roxburghii	Rroxscaffold_5G00387240
rosa_rugosa	Rorug04G0375800
rosa_samantha	Rh4AG437000 Rh4BG446200 Rh4CG463500 Rh4DG444800
rosa_wichuraiana	Rw4G037390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	174
AasI	GACNNNNNNGTC	1 cut(s)	118
Acc16I	TGCGCA	1 cut(s)	737
AciI	CCGC	1 cut(s)	725
AcsI	RAATTY	2 cut(s)	353, 763
AfaI	GTAC	1 cut(s)	441
AfeI	AGCGCT	1 cut(s)	507
AfiI	CCNNNNNNNGG	4 cut(s)	375, 416, 434, 751
AgsI	TTSAA	4 cut(s)	160, 262, 455, 585
AjnI	CCWGG	2 cut(s)	369, 409
AjuI	GAANNNNNNNTTGG	2 cut(s)	447, 479
AloI	GAACNNNNNNTCC	1 cut(s)	765
AluBI	AGCT	3 cut(s)	27, 131, 271
AluI	AGCT	3 cut(s)	27, 131, 271
Alw26I	GTCTC	1 cut(s)	553
Aor51HI	AGCGCT	1 cut(s)	507
AoxI	GGCC	2 cut(s)	232, 741
ApeKI	GCWGC	2 cut(s)	365, 503
ApoI	RAATTY	2 cut(s)	353, 763
AspLEI	GCGC	2 cut(s)	508, 738
AspS9I	GGNCC	2 cut(s)	111, 742
AvaII	GGWCC	1 cut(s)	111
BbvCI	CCTCAGC	1 cut(s)	750
BbvI	GCAGC	2 cut(s)	352, 515
BccI	CCATC	3 cut(s)	102, 243, 714
BciT130I	CCWGG	2 cut(s)	371, 411
BcoDI	GTCTC	1 cut(s)	553
BfaI	CTAG	3 cut(s)	135, 272, 434
BfoI	RGCGCY	1 cut(s)	509
BisI	GCNGC	3 cut(s)	366, 504, 726
BlsI	GCNGC	3 cut(s)	367, 505, 727
Bme1390I	CCNGG	2 cut(s)	371, 411
Bme18I	GGWCC	1 cut(s)	111
BmgT120I	GGNCC	2 cut(s)	111, 742
BmiI	GGNNCC	4 cut(s)	113, 165, 192, 469
BmrFI	CCNGG	2 cut(s)	371, 411
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	2 cut(s)	172, 682
BmuI	ACTGGG	1 cut(s)	235
BpmI	CTGGAG	1 cut(s)	432
Bpu10I	CCTNAGC	2 cut(s)	523, 750
BpuEI	CTTGAG	2 cut(s)	464, 551
BsaJI	CCNNGG	2 cut(s)	115, 369
Bsc4I	CCNNNNNNNGG	4 cut(s)	375, 416, 434, 751
Bse1I	ACTGG	1 cut(s)	230
Bse3DI	GCAATG	1 cut(s)	735
BseBI	CCWGG	2 cut(s)	371, 411
BseDI	CCNNGG	2 cut(s)	115, 369
BseGI	GGATG	2 cut(s)	616, 697
BseLI	CCNNNNNNNGG	4 cut(s)	375, 416, 434, 751
BseMI	GCAATG	1 cut(s)	735
BseMII	CTCAG	2 cut(s)	537, 741
BseNI	ACTGG	1 cut(s)	230
BseRI	GAGGAG	2 cut(s)	9, 429
BseXI	GCAGC	2 cut(s)	352, 515
BseYI	CCCAGC	1 cut(s)	528
BshFI	GGCC	2 cut(s)	234, 743
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	4 cut(s)	375, 416, 434, 751
BsmAI	GTCTC	1 cut(s)	553
BsmFI	GGGAC	1 cut(s)	434
BsmI	GAATGC	1 cut(s)	727
BsnI	GGCC	2 cut(s)	234, 743
Bsp19I	CCATGG	1 cut(s)	115
BspACI	CCGC	1 cut(s)	725
BspANI	GGCC	2 cut(s)	234, 743
BspCNI	CTCAG	2 cut(s)	536, 742
BspHI	TCATGA	1 cut(s)	382
BspLI	GGNNCC	4 cut(s)	113, 165, 192, 469
BsrDI	GCAATG	1 cut(s)	735
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	2 cut(s)	115, 369
BssT1I	CCWWGG	1 cut(s)	115
Bst2UI	CCWGG	2 cut(s)	371, 411
Bst4CI	ACNGT	2 cut(s)	59, 291
Bst6I	CTCTTC	4 cut(s)	16, 55, 272, 549
BstC8I	GCNNGC	1 cut(s)	648
BstDEI	CTNAG	2 cut(s)	523, 750
BstDSI	CCRYGG	1 cut(s)	115
BstENI	CCTNNNNNAGG	1 cut(s)	414
BstF5I	GGATG	2 cut(s)	616, 697
BstH2I	RGCGCY	1 cut(s)	509
BstHHI	GCGC	2 cut(s)	508, 738
BstMAI	GTCTC	1 cut(s)	553
BstNI	CCWGG	2 cut(s)	371, 411
BstNSI	RCATGY	2 cut(s)	427, 650
BstSCI	CCNGG	2 cut(s)	369, 409
BstV1I	GCAGC	2 cut(s)	352, 515
BstXI	CCANNNNNNTGG	1 cut(s)	606
BsuRI	GGCC	2 cut(s)	234, 743
BtgI	CCRYGG	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	616, 697
BtsIMutI	CAGTG	3 cut(s)	55, 95, 223
Cac8I	GCNNGC	1 cut(s)	648
CciI	TCATGA	1 cut(s)	382
CfoI	GCGC	2 cut(s)	508, 738
Cfr13I	GGNCC	2 cut(s)	111, 742
Csp6I	GTAC	1 cut(s)	440
CviAII	CATG	6 cut(s)	116, 383, 403, 424, 647, 739
CviQI	GTAC	1 cut(s)	440
DdeI	CTNAG	2 cut(s)	523, 750
DraI	TTTAAA	1 cut(s)	546
DrdI	GACNNNNNNGTC	1 cut(s)	118
DseDI	GACNNNNNNGTC	1 cut(s)	118
Eam1104I	CTCTTC	4 cut(s)	16, 55, 272, 549
EarI	CTCTTC	4 cut(s)	16, 55, 272, 549
Eco130I	CCWWGG	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	111
Eco47III	AGCGCT	1 cut(s)	507
EcoNI	CCTNNNNNAGG	1 cut(s)	414
EcoRII	CCWGG	2 cut(s)	369, 409
EcoT14I	CCWWGG	1 cut(s)	115
EcoT22I	ATGCAT	1 cut(s)	697
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	6 cut(s)	119, 386, 406, 427, 650, 742
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	6 cut(s)	115, 382, 402, 423, 646, 738
Fnu4HI	GCNGC	3 cut(s)	366, 504, 726
FokI	GGATG	2 cut(s)	623, 704
Fsp4HI	GCNGC	3 cut(s)	366, 504, 726
FspAI	RTGCGCAY	1 cut(s)	737
FspBI	CTAG	3 cut(s)	135, 272, 434
FspI	TGCGCA	1 cut(s)	737
GlaI	GCGC	2 cut(s)	507, 737
GluI	GCNGC	3 cut(s)	366, 504, 726
GsaI	CCCAGC	1 cut(s)	532
GsuI	CTGGAG	1 cut(s)	432
HaeII	RGCGCY	1 cut(s)	509
HaeIII	GGCC	2 cut(s)	234, 743
HhaI	GCGC	2 cut(s)	508, 738
Hin1II	CATG	6 cut(s)	119, 386, 406, 427, 650, 742
Hin6I	GCGC	2 cut(s)	506, 736
HinP1I	GCGC	2 cut(s)	506, 736
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	6 cut(s)	43, 67, 202, 340, 379, 398
Hpy166II	GTNNAC	3 cut(s)	42, 223, 440
Hpy188I	TCNGA	2 cut(s)	207, 485
Hpy188III	TCNNGA	5 cut(s)	135, 376, 383, 568, 659
Hpy8I	GTNNAC	3 cut(s)	42, 223, 440
HpyAV	CCTTC	2 cut(s)	154, 248
HpyCH4III	ACNGT	2 cut(s)	59, 291
HpyCH4V	TGCA	2 cut(s)	406, 695
HpyF3I	CTNAG	2 cut(s)	523, 750
Hsp92II	CATG	6 cut(s)	119, 386, 406, 427, 650, 742
HspAI	GCGC	2 cut(s)	506, 736
LmnI	GCTCC	1 cut(s)	643
Lsp1109I	GCAGC	2 cut(s)	352, 515
LweI	GCATC	2 cut(s)	172, 682
MaeI	CTAG	3 cut(s)	135, 272, 434
MaeIII	GTNAC	3 cut(s)	120, 242, 281
MboII	GAAGA	5 cut(s)	3, 6, 42, 289, 566
MluCI	AATT	2 cut(s)	353, 763
MlyI	GAGTC	3 cut(s)	37, 61, 211
Mph1103I	ATGCAT	1 cut(s)	697
MseI	TTAA	3 cut(s)	63, 357, 545
MspR9I	CCNGG	2 cut(s)	371, 411
Mva1269I	GAATGC	1 cut(s)	727
MvaI	CCWGG	2 cut(s)	371, 411
NcoI	CCATGG	1 cut(s)	115
NlaIII	CATG	6 cut(s)	119, 386, 406, 427, 650, 742
NlaIV	GGNNCC	4 cut(s)	113, 165, 192, 469
NmuCI	GTSAC	2 cut(s)	120, 281
NsbI	TGCGCA	1 cut(s)	737
NsiI	ATGCAT	1 cut(s)	697
NspI	RCATGY	2 cut(s)	427, 650
PaeI	GCATGC	1 cut(s)	650
PagI	TCATGA	1 cut(s)	382
PctI	GAATGC	1 cut(s)	727
PfeI	GAWTC	3 cut(s)	340, 379, 398
PkrI	GCNGC	3 cut(s)	367, 505, 727
PleI	GAGTC	3 cut(s)	37, 61, 210
PpsI	GAGTC	3 cut(s)	37, 61, 210
PsiI	TTATAA	1 cut(s)	174
Psp6I	CCWGG	2 cut(s)	369, 409
PspFI	CCCAGC	1 cut(s)	528
PspGI	CCWGG	2 cut(s)	369, 409
PspN4I	GGNNCC	4 cut(s)	113, 165, 192, 469
PspPI	GGNCC	2 cut(s)	111, 742
RsaI	GTAC	1 cut(s)	441
RsaNI	GTAC	1 cut(s)	440
SaqAI	TTAA	3 cut(s)	63, 357, 545
SatI	GCNGC	3 cut(s)	366, 504, 726
Sau96I	GGNCC	2 cut(s)	111, 742
SchI	GAGTC	3 cut(s)	37, 61, 211
ScrFI	CCNGG	2 cut(s)	371, 411
SfaNI	GCATC	2 cut(s)	172, 682
SinI	GGWCC	1 cut(s)	111
SmlI	CTYRAG	2 cut(s)	443, 566
SmoI	CTYRAG	2 cut(s)	443, 566
SphI	GCATGC	1 cut(s)	650
Sse9I	AATT	2 cut(s)	353, 763
SsiI	CCGC	1 cut(s)	725
SspMI	CTAG	3 cut(s)	135, 272, 434
StyD4I	CCNGG	2 cut(s)	369, 409
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	2 cut(s)	59, 291
TasI	AATT	2 cut(s)	353, 763
TatI	WGTACW	1 cut(s)	439
TauI	GCSGC	1 cut(s)	728
TfiI	GAWTC	3 cut(s)	340, 379, 398
Tru1I	TTAA	3 cut(s)	63, 357, 545
Tru9I	TTAA	3 cut(s)	63, 357, 545
TscAI	CASTG	3 cut(s)	62, 95, 230
TseFI	GTSAC	2 cut(s)	120, 281
TseI	GCWGC	2 cut(s)	365, 503
Tsp45I	GTSAC	2 cut(s)	120, 281
TspDTI	ATGAA	2 cut(s)	324, 716
TspRI	CASTG	3 cut(s)	62, 95, 230
VpaK11BI	GGWCC	1 cut(s)	111
XagI	CCTNNNNNAGG	1 cut(s)	414
XapI	RAATTY	2 cut(s)	353, 763
XbaI	TCTAGA	1 cut(s)	134
XceI	RCATGY	2 cut(s)	427, 650
XspI	CTAG	3 cut(s)	135, 272, 434
Zsp2I	ATGCAT	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.