Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013900

Physical Location & Seq

Genomic Coordinates Reverse (-)

8295110 .. 8297159

Gene Structure 2050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G24330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGTGGCTGTGAGGCGAAGGAGAACACAAGCGTCAAACCCTAGATCCGAACCACCGCAACACATGTCGGATCATGATTCCGATTCCGATTGGGATACAGTCTGCGAAGAATGCAGTTCCGGTAAACAACCAGCAAAGCTGCTTCTTTGCGACAAATGCGATAAAGGGTTTCATCTTTTCTGTCTCAGACCGATCCTCGTTTCAGTTCCCAAAGGCTCTTGGTTCTGCCCTTCTTGTTCCAAACATCAGATCCCTAAATCTTTCCCTCTTATTCAGACTAAAATTATAGATTTCTTCCGGATTAAGCGGTCTCCAGATTCATCTCAAATCTCAAGTTCTTCAGATAGTATTGGGAAGAAACGGAAAAAGACTAGCTTGGTGATGTCAAAGAAGAAGAGAAGGCTTCTTCCATACAATCCTAGCAATGATCCTCAAAGGAGGCTAGAGCAAATGGCGTCTCTGGCCACTGCGTTGAGAGCTTCCAACACCAAGTTCAGCAATGAGCTTACTTATGTATCTGGAAAGGCTCCAAGATCTGCAAACCAAGCTGCTTTTGAGAAAGGAGGCATGCAGGTTCTATCTAAAGAAGGCGTAGAGACCTTAGCCTTGTGCAAGAAAATGATGGACCTCGGTGAATGCCCGCCACTTATGGTCGTCTTCGATCCTTATGAAGGGTTCACAGTAGAGGCGGACAGGTTTATAAAAGACTGGACAATTATCACAGAGTATGTTGGAGATGTTGATTATCTGAGCAATAGAGAAGATGACTATGATGGAGACAGTATGATGACTCTACTTCATGCCTCTGATCCTTCGCAATGTCTCGTAATTTGCCCTGACAGACGCAGTAACATCGCCCGGTTCATCAGTGGCATCAACAATCACTCACCAGAAGGGAGGAAGAAGCAGAACCTGAAGTGTGTGAGGTTCAACATCAACGGAGAAGCTAGGGTTCTTCTCGTAGCTAATAGAGACATATCGAAAGGGGAAAGATTGTATTATGATTACAACGGATATGAACATGAGTATCCAACTGAACATTTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009889 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010556 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046976 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070734 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD SET

Protein Analysis

349

Amino Acids

39.64

Weight (kDa)

8.81

Isoelectric Point (pI)

56.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	35 - 79	1.6e-10	PHD-finger
SET	PF00856	225 - 337	3.4e-09	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24330
fragaria_vesca	FvH4_7g32150
malus_domestica	MD01G1224300.v1.1
prunus_persica	Prupe.2G314600_v2.0.a1
pyrus_communis	pycom01g23310
rosa_chinensis	RchiOBHm_Chr1g0381761
rosa_laevigata	RLG00000026210
rosa_multiflora	Rmu_sc0008418.1_g000011 Rmu_sc0035117.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278470 Rroxscaffold_7G00185810
rosa_rugosa	Rorug01G0430800
rosa_samantha	Rh1AG454100 Rh1BG411500 Rh1CG425700 Rh1DG443300
rosa_wichuraiana	Rw1G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	701
Acc36I	ACCTGC	1 cut(s)	562
AccIII	TCCGGA	1 cut(s)	297
AciI	CCGC	4 cut(s)	56, 307, 641, 689
AclWI	GGATC	7 cut(s)	39, 78, 187, 244, 422, 656, 803
AcoI	YGGCCR	1 cut(s)	462
AcuI	CTGAAG	2 cut(s)	324, 935
AcyI	GRCGYC	1 cut(s)	455
AfiI	CCNNNNNNNGG	1 cut(s)	671
AflIII	ACRYGT	1 cut(s)	63
AgsI	TTSAA	1 cut(s)	931
AjuI	GAANNNNNNNTTGG	2 cut(s)	476, 508
AluBI	AGCT	7 cut(s)	139, 375, 479, 505, 548, 947, 965
AluI	AGCT	7 cut(s)	139, 375, 479, 505, 548, 947, 965
Alw26I	GTCTC	7 cut(s)	188, 315, 462, 590, 771, 827, 966
AlwI	GGATC	7 cut(s)	39, 78, 187, 244, 422, 656, 803
AlwNI	CAGNNNCTG	1 cut(s)	913
Aor13HI	TCCGGA	1 cut(s)	297
AoxI	GGCC	1 cut(s)	462
ApeKI	GCWGC	2 cut(s)	139, 548
AspS9I	GGNCC	1 cut(s)	625
AsuC2I	CCSGG	1 cut(s)	859
AsuHPI	GGTGA	3 cut(s)	391, 644, 879
AvaII	GGWCC	1 cut(s)	625
BaeI	ACNNNNGTAYC	4 cut(s)	498, 531, 1010, 1043
BalI	TGGCCA	1 cut(s)	464
BbsI	GAAGAC	1 cut(s)	649
BbvI	GCAGC	2 cut(s)	126, 535
BccI	CCATC	2 cut(s)	616, 767
BcgI	CGANNNNNNTGC	2 cut(s)	835, 869
BciVI	GTATCC	2 cut(s)	88, 1038
BcnI	CCSGG	1 cut(s)	859
BcoDI	GTCTC	7 cut(s)	188, 315, 462, 590, 771, 827, 966
BfaI	CTAG	5 cut(s)	42, 372, 420, 443, 948
BfuAI	ACCTGC	1 cut(s)	562
BfuI	GTATCC	2 cut(s)	88, 1038
BglII	AGATCT	1 cut(s)	533
BisI	GCNGC	2 cut(s)	140, 549
BlsI	GCNGC	2 cut(s)	141, 550
Bme1390I	CCNGG	1 cut(s)	859
Bme18I	GGWCC	1 cut(s)	625
BmgT120I	GGNCC	1 cut(s)	625
BmiI	GGNNCC	1 cut(s)	528
BmrFI	CCNGG	1 cut(s)	859
BmsI	GCATC	1 cut(s)	882
BpiI	GAAGAC	1 cut(s)	649
BpmI	CTGGAG	1 cut(s)	297
Bpu10I	CCTNAGC	1 cut(s)	601
BpuEI	CTTGAG	1 cut(s)	316
BpuMI	CCSGG	1 cut(s)	859
BsaHI	GRCGYC	1 cut(s)	455
BsaI	GGTCTC	2 cut(s)	315, 590
BsaJI	CCNNGG	1 cut(s)	628
BsaWI	WCCGGW	2 cut(s)	119, 297
Bsc4I	CCNNNNNNNGG	1 cut(s)	671
Bse1I	ACTGG	1 cut(s)	713
Bse3DI	GCAATG	3 cut(s)	430, 505, 824
BseAI	TCCGGA	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	628
BseLI	CCNNNNNNNGG	1 cut(s)	671
BseMI	GCAATG	3 cut(s)	430, 505, 824
BseMII	CTCAG	2 cut(s)	199, 740
BseNI	ACTGG	1 cut(s)	713
BseXI	GCAGC	2 cut(s)	126, 535
BshFI	GGCC	1 cut(s)	464
BsiSI	CCGG	3 cut(s)	120, 298, 859
BslI	CCNNNNNNNGG	1 cut(s)	671
BsmAI	GTCTC	7 cut(s)	188, 315, 462, 590, 771, 827, 966
BsmBI	CGTCTC	1 cut(s)	462
BsmI	GAATGC	2 cut(s)	116, 641
BsnI	GGCC	1 cut(s)	464
Bso31I	GGTCTC	2 cut(s)	315, 590
Bsp13I	TCCGGA	1 cut(s)	297
Bsp143I	GATC	8 cut(s)	44, 70, 192, 249, 427, 533, 661, 808
BspACI	CCGC	4 cut(s)	56, 307, 641, 689
BspANI	GGCC	1 cut(s)	464
BspCNI	CTCAG	2 cut(s)	198, 741
BspEI	TCCGGA	1 cut(s)	297
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	528
BspMI	ACCTGC	1 cut(s)	562
BspPI	GGATC	7 cut(s)	39, 78, 187, 244, 422, 656, 803
BspTNI	GGTCTC	2 cut(s)	315, 590
BsrDI	GCAATG	3 cut(s)	430, 505, 824
BsrI	ACTGG	1 cut(s)	713
BssECI	CCNNGG	1 cut(s)	628
BssMI	GATC	8 cut(s)	44, 70, 192, 249, 427, 533, 661, 808
BssNI	GRCGYC	1 cut(s)	455
Bst4CI	ACNGT	3 cut(s)	100, 682, 782
Bst6I	CTCTTC	1 cut(s)	389
BstACI	GRCGYC	1 cut(s)	455
BstC8I	GCNNGC	2 cut(s)	569, 641
BstDEI	CTNAG	3 cut(s)	185, 601, 749
BstENI	CCTNNNNNAGG	1 cut(s)	669
BstKTI	GATC	8 cut(s)	47, 73, 195, 252, 430, 536, 664, 811
BstMAI	GTCTC	7 cut(s)	188, 315, 462, 590, 771, 827, 966
BstMBI	GATC	8 cut(s)	44, 70, 192, 249, 427, 533, 661, 808
BstMWI	GCNNNNNNNGC	5 cut(s)	111, 156, 461, 476, 545
BstNSI	RCATGY	2 cut(s)	67, 571
BstSCI	CCNGG	1 cut(s)	857
BstV1I	GCAGC	2 cut(s)	126, 535
BstV2I	GAAGAC	1 cut(s)	649
BstX2I	RGATCY	3 cut(s)	44, 249, 533
BstYI	RGATCY	3 cut(s)	44, 249, 533
BsuI	GTATCC	2 cut(s)	88, 1038
BsuRI	GGCC	1 cut(s)	464
BtgZI	GCGATG	1 cut(s)	838
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	2 cut(s)	465, 874
BveI	ACCTGC	1 cut(s)	562
Cac8I	GCNNGC	2 cut(s)	569, 641
CaiI	CAGNNNCTG	1 cut(s)	913
CciI	TCATGA	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	625
CseI	GACGC	3 cut(s)	21, 444, 852
CviAII	CATG	5 cut(s)	64, 74, 568, 800, 1022
DdeI	CTNAG	3 cut(s)	185, 601, 749
DpnI	GATC	8 cut(s)	46, 72, 194, 251, 429, 535, 663, 810
DpnII	GATC	8 cut(s)	44, 70, 192, 249, 427, 533, 661, 808
EaeI	YGGCCR	1 cut(s)	462
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
EciI	GGCGGA	1 cut(s)	704
Eco31I	GGTCTC	2 cut(s)	315, 590
Eco47I	GGWCC	1 cut(s)	625
Eco57I	CTGAAG	2 cut(s)	324, 935
EcoNI	CCTNNNNNAGG	1 cut(s)	669
Esp3I	CGTCTC	1 cut(s)	462
FaeI	CATG	5 cut(s)	67, 77, 571, 803, 1025
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FatI	CATG	5 cut(s)	63, 73, 567, 799, 1021
FauI	CCCGC	1 cut(s)	648
Fnu4HI	GCNGC	2 cut(s)	140, 549
Fsp4HI	GCNGC	2 cut(s)	140, 549
FspBI	CTAG	5 cut(s)	42, 372, 420, 443, 948
GluI	GCNGC	2 cut(s)	140, 549
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	464
HapII	CCGG	3 cut(s)	120, 298, 859
HgaI	GACGC	3 cut(s)	21, 444, 852
Hin1I	GRCGYC	1 cut(s)	455
Hin1II	CATG	5 cut(s)	67, 77, 571, 803, 1025
HinfI	GANTC	4 cut(s)	77, 83, 317, 790
HpaII	CCGG	3 cut(s)	120, 298, 859
HphI	GGTGA	3 cut(s)	391, 644, 879
Hpy166II	GTNNAC	2 cut(s)	125, 678
Hpy188III	TCNNGA	4 cut(s)	74, 298, 314, 519
Hpy8I	GTNNAC	2 cut(s)	125, 678
HpyAV	CCTTC	7 cut(s)	12, 240, 393, 581, 665, 822, 887
HpyCH4III	ACNGT	3 cut(s)	100, 682, 782
HpyCH4V	TGCA	4 cut(s)	114, 539, 571, 612
HpyF10VI	GCNNNNNNNGC	5 cut(s)	111, 156, 461, 476, 545
HpyF3I	CTNAG	3 cut(s)	185, 601, 749
Hsp92I	GRCGYC	1 cut(s)	455
Hsp92II	CATG	5 cut(s)	67, 77, 571, 803, 1025
Kpn2I	TCCGGA	1 cut(s)	297
Kzo9I	GATC	8 cut(s)	44, 70, 192, 249, 427, 533, 661, 808
LmnI	GCTCC	1 cut(s)	532
Lsp1109I	GCAGC	2 cut(s)	126, 535
LweI	GCATC	1 cut(s)	882
MaeI	CTAG	5 cut(s)	42, 372, 420, 443, 948
MaeIII	GTNAC	1 cut(s)	848
MalI	GATC	8 cut(s)	46, 72, 194, 251, 429, 535, 663, 810
MboI	GATC	8 cut(s)	44, 70, 192, 249, 427, 533, 661, 808
MflI	RGATCY	3 cut(s)	44, 249, 533
MlsI	TGGCCA	1 cut(s)	464
MluCI	AATT	3 cut(s)	282, 714, 828
MluNI	TGGCCA	1 cut(s)	464
MlyI	GAGTC	1 cut(s)	784
MmeI	TCCRAC	3 cut(s)	48, 507, 712
Mox20I	TGGCCA	1 cut(s)	464
MroI	TCCGGA	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	464
MseI	TTAA	1 cut(s)	303
Msp20I	TGGCCA	1 cut(s)	464
MspI	CCGG	3 cut(s)	120, 298, 859
MspR9I	CCNGG	1 cut(s)	859
Mva1269I	GAATGC	2 cut(s)	116, 641
MwoI	GCNNNNNNNGC	5 cut(s)	111, 156, 461, 476, 545
NciI	CCSGG	1 cut(s)	859
NdeII	GATC	8 cut(s)	44, 70, 192, 249, 427, 533, 661, 808
NlaIII	CATG	5 cut(s)	67, 77, 571, 803, 1025
NlaIV	GGNNCC	1 cut(s)	528
NspI	RCATGY	2 cut(s)	67, 571
PaeI	GCATGC	1 cut(s)	571
PagI	TCATGA	1 cut(s)	73
PciI	ACATGT	1 cut(s)	63
PctI	GAATGC	2 cut(s)	116, 641
PfeI	GAWTC	3 cut(s)	77, 83, 317
PkrI	GCNGC	2 cut(s)	141, 550
PleI	GAGTC	1 cut(s)	784
PpsI	GAGTC	1 cut(s)	784
PscI	ACATGT	1 cut(s)	63
PsiI	TTATAA	1 cut(s)	701
PspN4I	GGNNCC	1 cut(s)	528
PspPI	GGNCC	1 cut(s)	625
PstNI	CAGNNNCTG	1 cut(s)	913
PsuI	RGATCY	3 cut(s)	44, 249, 533
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	2 cut(s)	140, 549
Sau3AI	GATC	8 cut(s)	44, 70, 192, 249, 427, 533, 661, 808
Sau96I	GGNCC	1 cut(s)	625
SchI	GAGTC	1 cut(s)	784
ScrFI	CCNGG	1 cut(s)	859
SfaNI	GCATC	1 cut(s)	882
SinI	GGWCC	1 cut(s)	625
SmlI	CTYRAG	1 cut(s)	331
SmoI	CTYRAG	1 cut(s)	331
SphI	GCATGC	1 cut(s)	571
Sse9I	AATT	3 cut(s)	282, 714, 828
SsiI	CCGC	4 cut(s)	56, 307, 641, 689
SspMI	CTAG	5 cut(s)	42, 372, 420, 443, 948
StyD4I	CCNGG	1 cut(s)	857
TaaI	ACNGT	3 cut(s)	100, 682, 782
TaqI	TCGA	2 cut(s)	660, 980
TaqII	GACCGA	1 cut(s)	205
TasI	AATT	3 cut(s)	282, 714, 828
TfiI	GAWTC	3 cut(s)	77, 83, 317
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	2 cut(s)	472, 874
TseI	GCWGC	2 cut(s)	139, 548
TspDTI	ATGAA	6 cut(s)	161, 309, 684, 788, 853, 1032
TspGWI	ACGGA	3 cut(s)	376, 954, 1026
TspRI	CASTG	2 cut(s)	472, 874
VpaK11BI	GGWCC	1 cut(s)	625
XagI	CCTNNNNNAGG	1 cut(s)	669
XceI	RCATGY	2 cut(s)	67, 571
XspI	CTAG	5 cut(s)	42, 372, 420, 443, 948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.