Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0013900

Physical Location & Seq

Genomic Coordinates Reverse (-)

68450473 .. 68453479

Gene Structure 3007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG425700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGTGGCCCTGAGAAAGAGAACCCGAGCCCTAAAGCCACAAATGGCAATCGACAACGGCGGATCGGAATCCGAAAACGACGGCGGCGTTTGCTGCGAGGAATGTGTGTCCGGCCACTCGCCGGCGGAGCTTCTTCTCTGCGACGGCTGCGATAAAGGGTACCATCTGTTCTGCCTCAGACCCATCTTGGTTAATGTGCCCAAAGGCTCTTGGTTCGGGCCCTGTTGCTCCAAACAGAAGAAACCCAAGTCTTTCCCTCTCATCCAGACCAAAATCGTTGACTTCTTTCGGATTCAGAGAAACGCGGAAGTATCGGAGAAGATGAACCAAGATAATAAAAAGAGGCGAAAGAGAGCGAGTGGTTTGGTGATGTCGAAGAAGAGAAGGAGAATGTTGCCTTTTAGTCCTAGTGAAGATCCTGCCGTGAGATTGAAGCAAATGGCGTCCCTCGCAACAGCTTTGACGGCCACGGGAACTGAGTTTAGTAATAAGCTTAGTTATAGGCCTGGGATGGCGCCGAGGGAGGCCAACTGTCCAGATTATGAACATGGAGGCATGCAGGTTTTGTCAAAAGAAGATTTTGAGACTTTAACTTTGTGCAAAAGCATGATGGAAAGAGGAGAATGTCCACCCCTCATGGTTGTTTTTGATCCTCAGGAGGGGTTCACAGTTGAGGCTGATAAGCTTATAAAGGATTGGACAATAATCACAGAATACACTGGAGATGTTGATTACTTGAAGAACCGTGAAAATGATGATGGGGATAGCATTATGACATTACTTTCAGCTGCTGATCCTTCAAAAAGCCTTGTCATTTGTCCTGACAAGTATGGCAATATTGCCCGCTACATCAATGGCATCAACAATCACACACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009889 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010556 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046976 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070734 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD SET

Protein Analysis

292

Amino Acids

32.63

Weight (kDa)

8.38

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	32 - 76	1.8e-06	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24330
fragaria_vesca	FvH4_7g32150
malus_domestica	MD01G1224300.v1.1
prunus_persica	Prupe.2G314600_v2.0.a1
pyrus_communis	pycom01g23310
rosa_chinensis	RchiOBHm_Chr1g0381761
rosa_laevigata	RLG00000026210
rosa_multiflora	Rmu_sc0008418.1_g000011 Rmu_sc0035117.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278470 Rroxscaffold_7G00185810
rosa_rugosa	Rorug01G0430800
rosa_samantha	Rh1AG454100 Rh1BG411500 Rh1CG425700 Rh1DG443300
rosa_wichuraiana	Rw1G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	689
Acc36I	ACCTGC	1 cut(s)	550
Acc65I	GGTACC	1 cut(s)	159
AccB1I	GGYRCC	2 cut(s)	159, 514
AccII	CGCG	1 cut(s)	305
AciI	CCGC	5 cut(s)	60, 84, 125, 305, 844
AclWI	GGATC	4 cut(s)	70, 410, 644, 788
AcoI	YGGCCR	2 cut(s)	112, 465
AcyI	GRCGYC	2 cut(s)	443, 515
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	2 cut(s)	121, 659
AgsI	TTSAA	3 cut(s)	433, 739, 801
AjnI	CCWGG	1 cut(s)	505
AluBI	AGCT	5 cut(s)	130, 458, 493, 685, 788
AluI	AGCT	5 cut(s)	130, 458, 493, 685, 788
Alw26I	GTCTC	1 cut(s)	578
AlwI	GGATC	4 cut(s)	70, 410, 644, 788
AlwNI	CAGNNNCTG	1 cut(s)	791
Ama87I	CYCGRG	1 cut(s)	24
AoxI	GGCC	6 cut(s)	6, 112, 218, 465, 503, 525
ApaI	GGGCCC	1 cut(s)	222
ApeKI	GCWGC	3 cut(s)	93, 147, 788
ArsI	GACNNNNNNTTYG	2 cut(s)	577, 609
Asp718I	GGTACC	1 cut(s)	159
AspLEI	GCGC	1 cut(s)	517
AspS9I	GGNCC	3 cut(s)	7, 218, 219
AsuHPI	GGTGA	1 cut(s)	379
AvaI	CYCGRG	1 cut(s)	24
AxyI	CCTNAGG	1 cut(s)	654
BaeGI	GKGCMC	2 cut(s)	201, 222
BanI	GGYRCC	2 cut(s)	159, 514
BanII	GRGCYC	2 cut(s)	31, 222
BbvI	GCAGC	3 cut(s)	80, 134, 775
BccI	CCATC	5 cut(s)	171, 191, 505, 604, 752
BceAI	ACGGC	5 cut(s)	73, 97, 160, 407, 480
BciT130I	CCWGG	1 cut(s)	507
BcoDI	GTCTC	1 cut(s)	578
BfaI	CTAG	1 cut(s)	408
BfoI	RGCGCY	1 cut(s)	518
BfuAI	ACCTGC	1 cut(s)	550
BisI	GCNGC	4 cut(s)	85, 94, 148, 789
BlsI	GCNGC	4 cut(s)	86, 95, 149, 790
Bme1390I	CCNGG	1 cut(s)	507
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	3 cut(s)	7, 218, 219
BmiI	GGNNCC	3 cut(s)	161, 220, 516
BmrFI	CCNGG	1 cut(s)	507
BmsI	GCATC	1 cut(s)	867
BpmI	CTGGAG	1 cut(s)	741
BsaBI	GATNNNNATC	1 cut(s)	67
BsaHI	GRCGYC	2 cut(s)	443, 515
BsaJI	CCNNGG	3 cut(s)	468, 506, 518
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 659
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	724
Bse21I	CCTNAGG	1 cut(s)	654
Bse8I	GATNNNNATC	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	3 cut(s)	468, 506, 518
BseGI	GGATG	2 cut(s)	261, 516
BseJI	GATNNNNATC	1 cut(s)	67
BseLI	CCNNNNNNNGG	2 cut(s)	121, 659
BseMII	CTCAG	3 cut(s)	190, 468, 668
BseNI	ACTGG	1 cut(s)	724
BseRI	GAGGAG	1 cut(s)	633
BseSI	GKGCMC	2 cut(s)	201, 222
BseXI	GCAGC	3 cut(s)	80, 134, 775
Bsh1236I	CGCG	1 cut(s)	305
BshFI	GGCC	6 cut(s)	8, 114, 220, 467, 505, 527
BshNI	GGYRCC	2 cut(s)	159, 514
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	2 cut(s)	111, 122
BslFI	GGGAC	1 cut(s)	430
BslI	CCNNNNNNNGG	2 cut(s)	121, 659
BsmAI	GTCTC	1 cut(s)	578
BsmFI	GGGAC	1 cut(s)	430
BsnI	GGCC	6 cut(s)	8, 114, 220, 467, 505, 527
BsoBI	CYCGRG	1 cut(s)	24
Bsp120I	GGGCCC	1 cut(s)	218
Bsp1286I	GDGCHC	3 cut(s)	31, 201, 222
Bsp143I	GATC	4 cut(s)	62, 415, 649, 793
BspACI	CCGC	5 cut(s)	60, 84, 125, 305, 844
BspANI	GGCC	6 cut(s)	8, 114, 220, 467, 505, 527
BspCNI	CTCAG	3 cut(s)	189, 469, 667
BspFNI	CGCG	1 cut(s)	305
BspLI	GGNNCC	3 cut(s)	161, 220, 516
BspMI	ACCTGC	1 cut(s)	550
BspPI	GGATC	4 cut(s)	70, 410, 644, 788
BspT107I	GGYRCC	2 cut(s)	159, 514
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	724
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	3 cut(s)	468, 506, 518
BssMI	GATC	4 cut(s)	62, 415, 649, 793
BssNI	GRCGYC	2 cut(s)	443, 515
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	4 cut(s)	533, 670, 746, 876
Bst6I	CTCTTC	1 cut(s)	374
BstACI	GRCGYC	2 cut(s)	443, 515
BstC8I	GCNNGC	3 cut(s)	123, 557, 844
BstDEI	CTNAG	5 cut(s)	11, 176, 477, 494, 654
BstDSI	CCRYGG	1 cut(s)	468
BstF5I	GGATG	2 cut(s)	261, 516
BstFNI	CGCG	1 cut(s)	305
BstH2I	RGCGCY	1 cut(s)	518
BstHHI	GCGC	1 cut(s)	517
BstKTI	GATC	4 cut(s)	65, 418, 652, 796
BstMAI	GTCTC	1 cut(s)	578
BstMBI	GATC	4 cut(s)	62, 415, 649, 793
BstMWI	GCNNNNNNNGC	6 cut(s)	90, 93, 127, 147, 449, 464
BstNI	CCWGG	1 cut(s)	507
BstNSI	RCATGY	1 cut(s)	559
BstSCI	CCNGG	1 cut(s)	505
BstSLI	GKGCMC	2 cut(s)	201, 222
BstUI	CGCG	1 cut(s)	305
BstV1I	GCAGC	3 cut(s)	80, 134, 775
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
Bsu36I	CCTNAGG	1 cut(s)	654
BsuRI	GGCC	6 cut(s)	8, 114, 220, 467, 505, 527
BtgI	CCRYGG	1 cut(s)	468
BtsCI	GGATG	2 cut(s)	261, 516
BtsIMutI	CAGTG	1 cut(s)	717
BveI	ACCTGC	1 cut(s)	550
Cac8I	GCNNGC	3 cut(s)	123, 557, 844
CaiI	CAGNNNCTG	1 cut(s)	791
CfoI	GCGC	1 cut(s)	517
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	3 cut(s)	7, 218, 219
CseI	GACGC	1 cut(s)	432
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	4 cut(s)	548, 556, 607, 637
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	5 cut(s)	11, 176, 477, 494, 654
DinI	GGCGCC	1 cut(s)	516
DpnI	GATC	4 cut(s)	64, 417, 651, 795
DpnII	GATC	4 cut(s)	62, 415, 649, 793
EaeI	YGGCCR	2 cut(s)	112, 465
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
EciI	GGCGGA	2 cut(s)	75, 140
Eco147I	AGGCCT	1 cut(s)	505
Eco24I	GRGCYC	2 cut(s)	31, 222
Eco81I	CCTNAGG	1 cut(s)	654
Eco88I	CYCGRG	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	505
EcoT38I	GRGCYC	2 cut(s)	31, 222
EgeI	GGCGCC	1 cut(s)	516
EheI	GGCGCC	1 cut(s)	516
FaeI	CATG	4 cut(s)	551, 559, 610, 640
FaiI	YATR	9 cut(s)	501, 543, 549, 557, 608, 638, 689, 773, 831
FaqI	GGGAC	1 cut(s)	430
FatI	CATG	4 cut(s)	547, 555, 606, 636
FauI	CCCGC	1 cut(s)	851
Fnu4HI	GCNGC	4 cut(s)	85, 94, 148, 789
FokI	GGATG	2 cut(s)	248, 523
FriOI	GRGCYC	2 cut(s)	31, 222
Fsp4HI	GCNGC	4 cut(s)	85, 94, 148, 789
FspBI	CTAG	1 cut(s)	408
GlaI	GCGC	1 cut(s)	516
GluI	GCNGC	4 cut(s)	85, 94, 148, 789
GsuI	CTGGAG	1 cut(s)	741
HaeII	RGCGCY	1 cut(s)	518
HaeIII	GGCC	6 cut(s)	8, 114, 220, 467, 505, 527
HapII	CCGG	2 cut(s)	111, 122
HgaI	GACGC	1 cut(s)	432
HhaI	GCGC	1 cut(s)	517
Hin1I	GRCGYC	2 cut(s)	443, 515
Hin1II	CATG	4 cut(s)	551, 559, 610, 640
Hin6I	GCGC	1 cut(s)	515
HinP1I	GCGC	1 cut(s)	515
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	2 cut(s)	491, 683
HinfI	GANTC	2 cut(s)	68, 292
HpaII	CCGG	2 cut(s)	111, 122
HphI	GGTGA	1 cut(s)	379
Hpy166II	GTNNAC	3 cut(s)	280, 629, 666
Hpy188I	TCNGA	6 cut(s)	67, 73, 179, 291, 297, 316
Hpy188III	TCNNGA	4 cut(s)	265, 536, 656, 821
Hpy8I	GTNNAC	3 cut(s)	280, 629, 666
Hpy99I	CGWCG	2 cut(s)	83, 146
HpyAV	CCTTC	2 cut(s)	378, 807
HpyCH4III	ACNGT	4 cut(s)	533, 670, 746, 876
HpyCH4V	TGCA	2 cut(s)	559, 600
HpyF10VI	GCNNNNNNNGC	6 cut(s)	90, 93, 127, 147, 449, 464
HpyF3I	CTNAG	5 cut(s)	11, 176, 477, 494, 654
Hsp92I	GRCGYC	2 cut(s)	443, 515
Hsp92II	CATG	4 cut(s)	551, 559, 610, 640
HspAI	GCGC	1 cut(s)	515
KasI	GGCGCC	1 cut(s)	514
KpnI	GGTACC	1 cut(s)	163
KroI	GCCGGC	1 cut(s)	121
KroNI	GCCGGC	1 cut(s)	123
Kzo9I	GATC	4 cut(s)	62, 415, 649, 793
LmnI	GCTCC	2 cut(s)	127, 233
Lsp1109I	GCAGC	3 cut(s)	80, 134, 775
LweI	GCATC	1 cut(s)	867
MaeI	CTAG	1 cut(s)	408
MalI	GATC	4 cut(s)	64, 417, 651, 795
MboI	GATC	4 cut(s)	62, 415, 649, 793
MboII	GAAGA	8 cut(s)	125, 250, 331, 388, 391, 425, 587, 751
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	3 cut(s)	31, 201, 222
Mly113I	GGCGCC	1 cut(s)	515
MreI	CGCCGGCG	1 cut(s)	121
MroNI	GCCGGC	1 cut(s)	121
MseI	TTAA	2 cut(s)	192, 590
MspA1I	CMGCKG	1 cut(s)	788
MspI	CCGG	2 cut(s)	111, 122
MspR9I	CCNGG	1 cut(s)	507
MvaI	CCWGG	1 cut(s)	507
MvnI	CGCG	1 cut(s)	305
MwoI	GCNNNNNNNGC	6 cut(s)	90, 93, 127, 147, 449, 464
NaeI	GCCGGC	1 cut(s)	123
NarI	GGCGCC	1 cut(s)	515
NdeII	GATC	4 cut(s)	62, 415, 649, 793
NgoMIV	GCCGGC	1 cut(s)	121
NlaIII	CATG	4 cut(s)	551, 559, 610, 640
NlaIV	GGNNCC	3 cut(s)	161, 220, 516
NmeAIII	GCCGAG	1 cut(s)	543
NspI	RCATGY	1 cut(s)	559
PaeI	GCATGC	1 cut(s)	559
PceI	AGGCCT	1 cut(s)	505
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PdiI	GCCGGC	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	68, 292
PkrI	GCNGC	4 cut(s)	86, 95, 149, 790
PluTI	GGCGCC	1 cut(s)	518
PsiI	TTATAA	1 cut(s)	689
Psp6I	CCWGG	1 cut(s)	505
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	3 cut(s)	161, 220, 516
PspOMI	GGGCCC	1 cut(s)	218
PspPI	GGNCC	3 cut(s)	7, 218, 219
PsrI	GAACNNNNNNTAC	2 cut(s)	152, 184
PstNI	CAGNNNCTG	1 cut(s)	791
PsuI	RGATCY	1 cut(s)	415
PvuII	CAGCTG	1 cut(s)	788
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SaqAI	TTAA	2 cut(s)	192, 590
SatI	GCNGC	4 cut(s)	85, 94, 148, 789
Sau3AI	GATC	4 cut(s)	62, 415, 649, 793
Sau96I	GGNCC	3 cut(s)	7, 218, 219
ScrFI	CCNGG	1 cut(s)	507
SduI	GDGCHC	3 cut(s)	31, 201, 222
SetI	ASST	6 cut(s)	132, 460, 495, 564, 687, 790
SfaNI	GCATC	1 cut(s)	867
SfoI	GGCGCC	1 cut(s)	516
SgrAI	CRCCGGYG	1 cut(s)	121
SphI	GCATGC	1 cut(s)	559
SseBI	AGGCCT	1 cut(s)	505
SsiI	CCGC	5 cut(s)	60, 84, 125, 305, 844
SspDI	GGCGCC	1 cut(s)	514
SspI	AATATT	1 cut(s)	838
SspMI	CTAG	1 cut(s)	408
StuI	AGGCCT	1 cut(s)	505
StyD4I	CCNGG	1 cut(s)	505
TaaI	ACNGT	4 cut(s)	533, 670, 746, 876
TaqI	TCGA	2 cut(s)	51, 374
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	2 cut(s)	68, 292
Tru1I	TTAA	2 cut(s)	192, 590
Tru9I	TTAA	2 cut(s)	192, 590
TscAI	CASTG	1 cut(s)	724
TseI	GCWGC	3 cut(s)	93, 147, 788
TspDTI	ATGAA	2 cut(s)	338, 558
TspRI	CASTG	1 cut(s)	724
XceI	RCATGY	1 cut(s)	559
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.