Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0013900

Physical Location & Seq

Genomic Coordinates Forward (+)

25249527 .. 25266005

Gene Structure 16479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00185810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGTGGCCCTGAGAAAGAGAACCCGAGCCATAAAGCCACAAATGGCAATCGACAACGGCGGATCGAAATCCGAAAACGACGGCGTTTACTGCGAGGAATGTGGGTCGGGCCACTCGCCGGCGGAGCTTCTTCTCTGCGACGGCTGCGATAAAGGGTACCATCTGTTTTGCCTCAGACCCATCTTGGTTAATGTGCCCAAAGGCTCTTGGTTTGGGCCTTGTTGTTCTAAACAGAAGAAACCCAAGTCTTTCCCTCTCGTTCAGACCAAAATCGTTGACTTCTTTCGGATTCAGAGAAACGCGGAAGTATCGGAGAAGATGAACCAAGATAATCGAAAGAGGCGAAGGAGAGCGAGTGGTTTGGTGATGTCCAAGAAGAGAAGGAGAATGTTGCCTTTTAGTCCCAGTGAAGATCCTGCTGTGAGATTGAAGCAAATGGCGTCCCTCGCAACAGCTTTGACGGCCACGGGAACTGAGTTTAGTAATAAGCTTAGTTATAGGCCTGGTATGGCGCTGAGGGAAGCCAACTGTCCAGATTATGAACATGGAGGCATGCAGGTTTTGTCAAAAGAAGATTTTGAGACTTTAACTTTGTGCAAAAGCATGATGGAAAGAGGAGAATGTCCGCCTCTCATGGTTGTTTTTGATCCTCAGGAGGGGTTCACAAGTGAGGCTGATAAGCTTATAAAGGATTGGACAATAATCACAGAATACACTGGAGATGTTTATTACTTGAAGAACCGTGAAAATGATGATGGGGAGAGCATTATGACATTACTTTCAGCTGGTGATCCTTCAAAAAGCCTTGTCATTTGTCCTGACAAGGAAGGGAGAAAGACGCAGAACCTAAAATGTGTAAGATTTGACGTCAACGGCGAGTCTTGGGTATTACTGATTGCCAACAGGGATATACCAAAGGGAGAGAGATTGTATTATGATTACAATGCATATGAGAATGAATATCCTACTGAGCACTTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009889 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010556 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046976 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070734 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD SET

Protein Analysis

327

Amino Acids

37.12

Weight (kDa)

8.36

Isoelectric Point (pI)

44.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	31 - 75	8.1e-08	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24330
fragaria_vesca	FvH4_7g32150
malus_domestica	MD01G1224300.v1.1
prunus_persica	Prupe.2G314600_v2.0.a1
pyrus_communis	pycom01g23310
rosa_chinensis	RchiOBHm_Chr1g0381761
rosa_laevigata	RLG00000026210
rosa_multiflora	Rmu_sc0008418.1_g000011 Rmu_sc0035117.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278470 Rroxscaffold_7G00185810
rosa_rugosa	Rorug01G0430800
rosa_samantha	Rh1AG454100 Rh1BG411500 Rh1CG425700 Rh1DG443300
rosa_wichuraiana	Rw1G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	686
AatII	GACGTC	1 cut(s)	870
Acc36I	ACCTGC	1 cut(s)	547
Acc65I	GGTACC	1 cut(s)	156
AccB1I	GGYRCC	1 cut(s)	156
AccII	CGCG	1 cut(s)	302
AciI	CCGC	4 cut(s)	60, 122, 302, 626
AclWI	GGATC	4 cut(s)	70, 407, 641, 785
AcoI	YGGCCR	1 cut(s)	462
AcyI	GRCGYC	2 cut(s)	440, 867
AdeI	CACNNNGTG	1 cut(s)	979
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	118, 656
AgsI	TTSAA	3 cut(s)	430, 736, 798
AjnI	CCWGG	1 cut(s)	502
AluBI	AGCT	5 cut(s)	127, 455, 490, 682, 785
AluI	AGCT	5 cut(s)	127, 455, 490, 682, 785
Alw21I	GWGCWC	1 cut(s)	975
Alw26I	GTCTC	1 cut(s)	575
AlwI	GGATC	4 cut(s)	70, 407, 641, 785
Ama87I	CYCGRG	1 cut(s)	24
AoxI	GGCC	5 cut(s)	6, 109, 215, 462, 500
ApeKI	GCWGC	1 cut(s)	144
ArsI	GACNNNNNNTTYG	2 cut(s)	574, 606
Asp718I	GGTACC	1 cut(s)	156
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	3 cut(s)	7, 109, 215
AsuHPI	GGTGA	2 cut(s)	376, 800
AvaI	CYCGRG	1 cut(s)	24
AxyI	CCTNAGG	1 cut(s)	651
BaeGI	GKGCMC	1 cut(s)	198
BanI	GGYRCC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	975
BbvCI	CCTCAGC	1 cut(s)	515
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	4 cut(s)	168, 188, 601, 749
BceAI	ACGGC	5 cut(s)	73, 97, 157, 477, 889
BciT130I	CCWGG	1 cut(s)	504
BcoDI	GTCTC	1 cut(s)	575
BfoI	RGCGCY	1 cut(s)	515
BfuAI	ACCTGC	1 cut(s)	547
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	504
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	3 cut(s)	7, 109, 215
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	504
BmrI	ACTGGG	1 cut(s)	399
BmuI	ACTGGG	1 cut(s)	399
BpmI	CTGGAG	1 cut(s)	738
Bpu10I	CCTNAGC	1 cut(s)	515
BsaBI	GATNNNNATC	1 cut(s)	67
BsaHI	GRCGYC	2 cut(s)	440, 867
BsaJI	CCNNGG	1 cut(s)	465
BsaXI	ACNNNNNCTCC	2 cut(s)	340, 370
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 656
Bse118I	RCCGGY	1 cut(s)	118
Bse1I	ACTGG	2 cut(s)	405, 721
Bse21I	CCTNAGG	1 cut(s)	651
Bse8I	GATNNNNATC	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	504
BseDI	CCNNGG	1 cut(s)	465
BseJI	GATNNNNATC	1 cut(s)	67
BseLI	CCNNNNNNNGG	2 cut(s)	118, 656
BseMII	CTCAG	5 cut(s)	187, 465, 506, 665, 960
BseNI	ACTGG	2 cut(s)	405, 721
BseRI	GAGGAG	1 cut(s)	630
BseSI	GKGCMC	1 cut(s)	198
BseXI	GCAGC	1 cut(s)	131
Bsh1236I	CGCG	1 cut(s)	302
BshFI	GGCC	5 cut(s)	8, 111, 217, 464, 502
BshNI	GGYRCC	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	975
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	2 cut(s)	387, 427
BslI	CCNNNNNNNGG	2 cut(s)	118, 656
BsmAI	GTCTC	1 cut(s)	575
BsmFI	GGGAC	2 cut(s)	387, 427
BsnI	GGCC	5 cut(s)	8, 111, 217, 464, 502
BsoBI	CYCGRG	1 cut(s)	24
Bsp1286I	GDGCHC	2 cut(s)	198, 975
Bsp143I	GATC	4 cut(s)	62, 412, 646, 790
BspACI	CCGC	4 cut(s)	60, 122, 302, 626
BspANI	GGCC	5 cut(s)	8, 111, 217, 464, 502
BspCNI	CTCAG	5 cut(s)	186, 466, 507, 664, 961
BspFNI	CGCG	1 cut(s)	302
BspLI	GGNNCC	1 cut(s)	158
BspMI	ACCTGC	1 cut(s)	547
BspPI	GGATC	4 cut(s)	70, 407, 641, 785
BspT107I	GGYRCC	1 cut(s)	156
BsrFI	RCCGGY	1 cut(s)	118
BsrI	ACTGG	2 cut(s)	405, 721
BssAI	RCCGGY	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	465
BssMI	GATC	4 cut(s)	62, 412, 646, 790
BssNI	GRCGYC	2 cut(s)	440, 867
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	2 cut(s)	530, 743
Bst6I	CTCTTC	1 cut(s)	371
BstACI	GRCGYC	2 cut(s)	440, 867
BstC8I	GCNNGC	2 cut(s)	120, 554
BstDEI	CTNAG	7 cut(s)	11, 173, 474, 491, 515, 651, 969
BstDSI	CCRYGG	1 cut(s)	465
BstFNI	CGCG	1 cut(s)	302
BstH2I	RGCGCY	1 cut(s)	515
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	4 cut(s)	65, 415, 649, 793
BstMAI	GTCTC	1 cut(s)	575
BstMBI	GATC	4 cut(s)	62, 412, 646, 790
BstMWI	GCNNNNNNNGC	5 cut(s)	90, 124, 144, 446, 461
BstNI	CCWGG	1 cut(s)	504
BstNSI	RCATGY	1 cut(s)	556
BstSCI	CCNGG	1 cut(s)	502
BstSLI	GKGCMC	1 cut(s)	198
BstUI	CGCG	1 cut(s)	302
BstV1I	GCAGC	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
Bsu36I	CCTNAGG	1 cut(s)	651
BsuRI	GGCC	5 cut(s)	8, 111, 217, 464, 502
BtgI	CCRYGG	1 cut(s)	465
BtsIMutI	CAGTG	2 cut(s)	412, 714
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	2 cut(s)	120, 554
CfoI	GCGC	1 cut(s)	514
Cfr10I	RCCGGY	1 cut(s)	118
Cfr13I	GGNCC	3 cut(s)	7, 109, 215
CseI	GACGC	2 cut(s)	429, 847
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	4 cut(s)	545, 553, 604, 634
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	7 cut(s)	11, 173, 474, 491, 515, 651, 969
DpnI	GATC	4 cut(s)	64, 414, 648, 792
DpnII	GATC	4 cut(s)	62, 412, 646, 790
DraIII	CACNNNGTG	1 cut(s)	979
EaeI	YGGCCR	1 cut(s)	462
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
EciI	GGCGGA	3 cut(s)	75, 137, 615
Eco147I	AGGCCT	1 cut(s)	502
Eco81I	CCTNAGG	1 cut(s)	651
Eco88I	CYCGRG	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	502
EcoT22I	ATGCAT	1 cut(s)	949
FaeI	CATG	4 cut(s)	548, 556, 607, 637
FaqI	GGGAC	2 cut(s)	387, 427
FatI	CATG	4 cut(s)	544, 552, 603, 633
FauNDI	CATATG	1 cut(s)	949
Fnu4HI	GCNGC	1 cut(s)	145
Fsp4HI	GCNGC	1 cut(s)	145
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	1 cut(s)	145
GsuI	CTGGAG	1 cut(s)	738
HaeII	RGCGCY	1 cut(s)	515
HaeIII	GGCC	5 cut(s)	8, 111, 217, 464, 502
HapII	CCGG	1 cut(s)	119
HgaI	GACGC	2 cut(s)	429, 847
HhaI	GCGC	1 cut(s)	514
Hin1I	GRCGYC	2 cut(s)	440, 867
Hin1II	CATG	4 cut(s)	548, 556, 607, 637
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HincII	GTYRAC	2 cut(s)	277, 871
HindII	GTYRAC	2 cut(s)	277, 871
HindIII	AAGCTT	2 cut(s)	488, 680
HinfI	GANTC	2 cut(s)	289, 878
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	2 cut(s)	376, 800
Hpy166II	GTNNAC	4 cut(s)	88, 277, 663, 871
Hpy188I	TCNGA	6 cut(s)	73, 176, 264, 288, 294, 313
Hpy188III	TCNNGA	3 cut(s)	533, 653, 818
Hpy8I	GTNNAC	4 cut(s)	88, 277, 663, 871
Hpy99I	CGWCG	2 cut(s)	83, 143
HpyAV	CCTTC	4 cut(s)	339, 375, 804, 821
HpyCH4III	ACNGT	2 cut(s)	530, 743
HpyCH4IV	ACGT	1 cut(s)	867
HpyCH4V	TGCA	3 cut(s)	556, 597, 947
HpyF10VI	GCNNNNNNNGC	5 cut(s)	90, 124, 144, 446, 461
HpyF3I	CTNAG	7 cut(s)	11, 173, 474, 491, 515, 651, 969
HpySE526I	ACGT	1 cut(s)	867
Hsp92I	GRCGYC	2 cut(s)	440, 867
Hsp92II	CATG	4 cut(s)	548, 556, 607, 637
HspAI	GCGC	1 cut(s)	512
KpnI	GGTACC	1 cut(s)	160
KroI	GCCGGC	1 cut(s)	118
KroNI	GCCGGC	1 cut(s)	120
Kzo9I	GATC	4 cut(s)	62, 412, 646, 790
LmnI	GCTCC	1 cut(s)	124
Lsp1109I	GCAGC	1 cut(s)	131
MaeII	ACGT	1 cut(s)	867
MalI	GATC	4 cut(s)	64, 414, 648, 792
MboI	GATC	4 cut(s)	62, 412, 646, 790
MboII	GAAGA	7 cut(s)	122, 247, 328, 388, 422, 584, 748
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	2 cut(s)	198, 975
MlyI	GAGTC	1 cut(s)	887
Mph1103I	ATGCAT	1 cut(s)	949
MreI	CGCCGGCG	1 cut(s)	118
MroNI	GCCGGC	1 cut(s)	118
MseI	TTAA	2 cut(s)	189, 587
MspA1I	CMGCKG	1 cut(s)	785
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	504
MvaI	CCWGG	1 cut(s)	504
MvnI	CGCG	1 cut(s)	302
MwoI	GCNNNNNNNGC	5 cut(s)	90, 124, 144, 446, 461
NaeI	GCCGGC	1 cut(s)	120
NdeI	CATATG	1 cut(s)	949
NdeII	GATC	4 cut(s)	62, 412, 646, 790
NgoMIV	GCCGGC	1 cut(s)	118
NlaIII	CATG	4 cut(s)	548, 556, 607, 637
NlaIV	GGNNCC	1 cut(s)	158
NsiI	ATGCAT	1 cut(s)	949
NspI	RCATGY	1 cut(s)	556
PaeI	GCATGC	1 cut(s)	556
PceI	AGGCCT	1 cut(s)	502
PcsI	WCGNNNNNNNCGW	2 cut(s)	340, 873
PdiI	GCCGGC	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	146
PleI	GAGTC	1 cut(s)	886
PpsI	GAGTC	1 cut(s)	886
PsiI	TTATAA	1 cut(s)	686
Psp6I	CCWGG	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	1 cut(s)	158
PspPI	GGNCC	3 cut(s)	7, 109, 215
PsuI	RGATCY	1 cut(s)	412
PvuII	CAGCTG	1 cut(s)	785
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SaqAI	TTAA	2 cut(s)	189, 587
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	4 cut(s)	62, 412, 646, 790
Sau96I	GGNCC	3 cut(s)	7, 109, 215
SchI	GAGTC	1 cut(s)	887
ScrFI	CCNGG	1 cut(s)	504
SduI	GDGCHC	2 cut(s)	198, 975
SetI	ASST	8 cut(s)	129, 457, 492, 561, 684, 787, 849, 870
SgrAI	CRCCGGYG	1 cut(s)	118
SphI	GCATGC	1 cut(s)	556
SseBI	AGGCCT	1 cut(s)	502
SsiI	CCGC	4 cut(s)	60, 122, 302, 626
StuI	AGGCCT	1 cut(s)	502
StyD4I	CCNGG	1 cut(s)	502
TaaI	ACNGT	2 cut(s)	530, 743
TaiI	ACGT	1 cut(s)	870
TaqI	TCGA	3 cut(s)	51, 65, 334
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	2 cut(s)	189, 587
Tru9I	TTAA	2 cut(s)	189, 587
TscAI	CASTG	2 cut(s)	412, 721
TseI	GCWGC	1 cut(s)	144
TspDTI	ATGAA	3 cut(s)	335, 555, 972
TspRI	CASTG	2 cut(s)	412, 721
XceI	RCATGY	1 cut(s)	556
ZraI	GACGTC	1 cut(s)	868
Zsp2I	ATGCAT	1 cut(s)	949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.