Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0013900

Physical Location & Seq

Genomic Coordinates Reverse (-)

29584506 .. 29588193

Gene Structure 3688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G314600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGTGGTGCTGGGGAGAAGAACCCAAGCCCCCAAGCCTCTTTCTCGTTCTCAAATAGTCGACGATGACTCTGATAGTGCTTCGGATTCTGAATACGGCGACGTTTCCTGCGAGGAATGTGGGTCAGGTGACTCTCCGGCCGAGCTGCTTCTGTGCGACGGCTGTAACTGTAACAGAGGGTACCATTTGTTTTGCCTGAGACCCATCCTTGTTCACGTGCCTAAAGGAAAATGGTTTGGCCCTTGTTGCTCCAAGAACAAAAAGCCCAAGTCTTTCCCTCTCCATCAGACCAAAATTAGTGATTTTTTTCGGATTAAGAGGTCTGCGGACTCACTCCAGAAGATTAATCAAGATAACCGAAAGAGGCGAAGGCGGGCAAGCAGCCTGGTGATGTCCAAAAAGAAAAGGAGATTATTGCCCTTTAGTCCCACCGAGGATCATACAAGGAGAATGCAACAAATGGCGTCACTAGCAACAGCATTGACTGCCACTGGGACTAAGTTCAGTAATGAGCTTACTTATAGGCCTAGATTGGCACCCAGGTCGGCCAATTGTGCAGCTCTTGAGCAAGGAGGAATGCAGGTTTTGTCGAAAGAAGATATTGAAACTTTGAATTTGTGCAAGAGCATGATGGATAGAGGAGAATGTCCACCCCTCATGGTTGTTTTTGATCCTCAGGAGGGGTTCACAGTAGAGGCTGATAAATTTATCAGGGATTTGACAATAATTACAGAATATGCTGGAGATGTAGATTACTTGAAGAACCGTGAAAATGATGATGGGGATAGCATGATGACATTGCTTTCAGCTGCTAACCCTTCAAAAAGCCTTGTCATTTGTCCTGACAAGCATGGTAACATTGCCCGCTTCGTCAATGGCATCAACAATCACACGCCGGATGGGAGAAAGAAGCAGAACCTGAAATGTGTAAGATATGATGTCAATGGTGAGAGTCGGGTTTTACTGATTGCAAACAGAGACATACCAAAAGGGGAGCGATTGTATTATGATTACAATGGATATGAGAATGAATATCCAACCGAGCATTTTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009889 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010556 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046976 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070734 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD SET

Protein Analysis

352

Amino Acids

39.63

Weight (kDa)

8.7

Isoelectric Point (pI)

50.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24330
fragaria_vesca	FvH4_7g32150
malus_domestica	MD01G1224300.v1.1
prunus_persica	Prupe.2G314600_v2.0.a1
pyrus_communis	pycom01g23310
rosa_chinensis	RchiOBHm_Chr1g0381761
rosa_laevigata	RLG00000026210
rosa_multiflora	Rmu_sc0008418.1_g000011 Rmu_sc0035117.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278470 Rroxscaffold_7G00185810
rosa_rugosa	Rorug01G0430800
rosa_samantha	Rh1AG454100 Rh1BG411500 Rh1CG425700 Rh1DG443300
rosa_wichuraiana	Rw1G039630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	571
Acc65I	GGTACC	1 cut(s)	180
AccB1I	GGYRCC	2 cut(s)	180, 535
AccI	GTMKAC	1 cut(s)	60
AciI	CCGC	3 cut(s)	326, 373, 865
AclWI	GGATC	2 cut(s)	444, 665
AcoI	YGGCCR	2 cut(s)	138, 546
AcsI	RAATTY	2 cut(s)	613, 704
AcvI	CACGTG	1 cut(s)	217
AcyI	GRCGYC	1 cut(s)	464
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	680
AgsI	TTSAA	4 cut(s)	605, 613, 760, 822
AjnI	CCWGG	2 cut(s)	384, 539
AluBI	AGCT	4 cut(s)	145, 514, 560, 809
AluI	AGCT	4 cut(s)	145, 514, 560, 809
Alw26I	GTCTC	2 cut(s)	193, 972
AlwI	GGATC	2 cut(s)	444, 665
AlwNI	CAGNNNCTG	1 cut(s)	919
AoxI	GGCC	4 cut(s)	138, 238, 524, 546
ApeKI	GCWGC	4 cut(s)	145, 381, 557, 809
ApoI	RAATTY	2 cut(s)	613, 704
AseI	ATTAAT	1 cut(s)	345
Asp718I	GGTACC	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	239
AsuHPI	GGTGA	3 cut(s)	140, 400, 959
AxyI	CCTNAGG	1 cut(s)	675
BanI	GGYRCC	2 cut(s)	180, 535
BbrPI	CACGTG	1 cut(s)	217
BbvI	GCAGC	4 cut(s)	132, 393, 569, 796
BccI	CCATC	5 cut(s)	212, 291, 625, 773, 893
BceAI	ACGGC	2 cut(s)	112, 175
BcgI	CGANNNNNNTGC	2 cut(s)	525, 559
BciT130I	CCWGG	2 cut(s)	386, 541
BcoDI	GTCTC	2 cut(s)	193, 972
BfaI	CTAG	3 cut(s)	470, 528, 1054
BfuAI	ACCTGC	1 cut(s)	571
BisI	GCNGC	4 cut(s)	146, 382, 558, 810
BlsI	GCNGC	4 cut(s)	147, 383, 559, 811
Bme1390I	CCNGG	2 cut(s)	386, 541
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	2 cut(s)	182, 537
BmrFI	CCNGG	2 cut(s)	386, 541
BmrI	ACTGGG	1 cut(s)	501
BmsI	GCATC	1 cut(s)	888
BmuI	ACTGGG	1 cut(s)	501
BpmI	CTGGAG	2 cut(s)	320, 762
BpuEI	CTTGAG	1 cut(s)	584
BsaAI	YACGTR	1 cut(s)	217
BsaHI	GRCGYC	1 cut(s)	464
BsaI	GGTCTC	1 cut(s)	193
BsaJI	CCNNGG	2 cut(s)	432, 539
BsaXI	ACNNNNNCTCC	2 cut(s)	986, 1016
Bsc4I	CCNNNNNNNGG	1 cut(s)	680
Bse1I	ACTGG	1 cut(s)	496
Bse21I	CCTNAGG	1 cut(s)	675
Bse3DI	GCAATG	2 cut(s)	797, 858
BseBI	CCWGG	2 cut(s)	386, 541
BseDI	CCNNGG	2 cut(s)	432, 539
BseGI	GGATG	2 cut(s)	204, 904
BseLI	CCNNNNNNNGG	1 cut(s)	680
BseMI	GCAATG	2 cut(s)	797, 858
BseMII	CTCAG	2 cut(s)	188, 689
BseNI	ACTGG	1 cut(s)	496
BseRI	GAGGAG	1 cut(s)	654
BseX3I	CGGCCG	1 cut(s)	138
BseXI	GCAGC	4 cut(s)	132, 393, 569, 796
BseYI	CCCAGC	1 cut(s)	10
BsgI	GTGCAG	1 cut(s)	576
Bsh1285I	CGRYCG	1 cut(s)	141
BshFI	GGCC	4 cut(s)	140, 240, 526, 548
BshNI	GGYRCC	2 cut(s)	180, 535
BsiEI	CGRYCG	1 cut(s)	141
BsiSI	CCGG	2 cut(s)	137, 896
BslFI	GGGAC	2 cut(s)	411, 508
BslI	CCNNNNNNNGG	1 cut(s)	680
BsmAI	GTCTC	2 cut(s)	193, 972
BsmFI	GGGAC	2 cut(s)	411, 508
BsmI	GAATGC	2 cut(s)	456, 582
BsnI	GGCC	4 cut(s)	140, 240, 526, 548
Bso31I	GGTCTC	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	436, 670
BspACI	CCGC	3 cut(s)	326, 373, 865
BspANI	GGCC	4 cut(s)	140, 240, 526, 548
BspCNI	CTCAG	2 cut(s)	189, 688
BspLI	GGNNCC	2 cut(s)	182, 537
BspMI	ACCTGC	1 cut(s)	571
BspPI	GGATC	2 cut(s)	444, 665
BspT107I	GGYRCC	2 cut(s)	180, 535
BspTNI	GGTCTC	1 cut(s)	193
BsrDI	GCAATG	2 cut(s)	797, 858
BsrI	ACTGG	1 cut(s)	496
BssECI	CCNNGG	2 cut(s)	432, 539
BssMI	GATC	2 cut(s)	436, 670
BssNI	GRCGYC	1 cut(s)	464
Bst2UI	CCWGG	2 cut(s)	386, 541
Bst4CI	ACNGT	3 cut(s)	170, 691, 767
BstACI	GRCGYC	1 cut(s)	464
BstAPI	GCANNNNNTGC	1 cut(s)	485
BstBAI	YACGTR	1 cut(s)	217
BstC8I	GCNNGC	3 cut(s)	375, 379, 865
BstDEI	CTNAG	3 cut(s)	197, 498, 675
BstF5I	GGATG	2 cut(s)	204, 904
BstKTI	GATC	2 cut(s)	439, 673
BstMAI	GTCTC	2 cut(s)	193, 972
BstMBI	GATC	2 cut(s)	436, 670
BstMCI	CGRYCG	1 cut(s)	141
BstMWI	GCNNNNNNNGC	4 cut(s)	246, 470, 485, 554
BstNI	CCWGG	2 cut(s)	386, 541
BstSCI	CCNGG	2 cut(s)	384, 539
BstV1I	GCAGC	4 cut(s)	132, 393, 569, 796
BstZI	CGGCCG	1 cut(s)	138
Bsu36I	CCTNAGG	1 cut(s)	675
BsuRI	GGCC	4 cut(s)	140, 240, 526, 548
BtsCI	GGATG	2 cut(s)	204, 904
BtsIMutI	CAGTG	1 cut(s)	489
BveI	ACCTGC	1 cut(s)	571
Cac8I	GCNNGC	3 cut(s)	375, 379, 865
CaiI	CAGNNNCTG	1 cut(s)	919
Cfr13I	GGNCC	1 cut(s)	239
CseI	GACGC	1 cut(s)	453
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	4 cut(s)	628, 658, 790, 851
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	3 cut(s)	197, 498, 675
DpnI	GATC	2 cut(s)	438, 672
DpnII	GATC	2 cut(s)	436, 670
EaeI	YGGCCR	2 cut(s)	138, 546
EagI	CGGCCG	1 cut(s)	138
EclXI	CGGCCG	1 cut(s)	138
Eco147I	AGGCCT	1 cut(s)	526
Eco31I	GGTCTC	1 cut(s)	193
Eco52I	CGGCCG	1 cut(s)	138
Eco72I	CACGTG	1 cut(s)	217
Eco81I	CCTNAGG	1 cut(s)	675
EcoRII	CCWGG	2 cut(s)	384, 539
FaeI	CATG	4 cut(s)	631, 661, 793, 854
FaqI	GGGAC	2 cut(s)	411, 508
FatI	CATG	4 cut(s)	627, 657, 789, 850
FauI	CCCGC	2 cut(s)	366, 872
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	4 cut(s)	146, 382, 558, 810
FokI	GGATG	2 cut(s)	191, 911
Fsp4HI	GCNGC	4 cut(s)	146, 382, 558, 810
FspBI	CTAG	3 cut(s)	470, 528, 1054
GluI	GCNGC	4 cut(s)	146, 382, 558, 810
GsaI	CCCAGC	1 cut(s)	14
GsuI	CTGGAG	2 cut(s)	320, 762
HaeIII	GGCC	4 cut(s)	140, 240, 526, 548
HapII	CCGG	2 cut(s)	137, 896
HgaI	GACGC	1 cut(s)	453
Hin1I	GRCGYC	1 cut(s)	464
Hin1II	CATG	4 cut(s)	631, 661, 793, 854
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	5 cut(s)	68, 86, 131, 329, 952
HpaII	CCGG	2 cut(s)	137, 896
HphI	GGTGA	3 cut(s)	140, 400, 959
Hpy166II	GTNNAC	4 cut(s)	61, 214, 650, 687
Hpy188I	TCNGA	5 cut(s)	73, 85, 91, 288, 312
Hpy188III	TCNNGA	5 cut(s)	337, 350, 563, 677, 842
Hpy8I	GTNNAC	4 cut(s)	61, 214, 650, 687
Hpy99I	CGWCG	3 cut(s)	65, 104, 161
HpyAV	CCTTC	2 cut(s)	363, 828
HpyCH4III	ACNGT	3 cut(s)	170, 691, 767
HpyCH4IV	ACGT	2 cut(s)	102, 216
HpyCH4V	TGCA	5 cut(s)	454, 557, 580, 621, 971
HpyF10VI	GCNNNNNNNGC	4 cut(s)	246, 470, 485, 554
HpyF3I	CTNAG	3 cut(s)	197, 498, 675
HpySE526I	ACGT	2 cut(s)	102, 216
Hsp92I	GRCGYC	1 cut(s)	464
Hsp92II	CATG	4 cut(s)	631, 661, 793, 854
KpnI	GGTACC	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	436, 670
LmnI	GCTCC	2 cut(s)	254, 994
Lsp1109I	GCAGC	4 cut(s)	132, 393, 569, 796
LweI	GCATC	1 cut(s)	888
MaeI	CTAG	3 cut(s)	470, 528, 1054
MaeII	ACGT	2 cut(s)	102, 216
MaeIII	GTNAC	5 cut(s)	128, 164, 170, 465, 854
MalI	GATC	2 cut(s)	438, 672
MboI	GATC	2 cut(s)	436, 670
MboII	GAAGA	4 cut(s)	30, 352, 608, 772
MfeI	CAATTG	1 cut(s)	550
MluCI	AATT	5 cut(s)	294, 550, 613, 704, 726
MlyI	GAGTC	4 cut(s)	62, 125, 323, 961
MseI	TTAA	2 cut(s)	315, 345
MspA1I	CMGCKG	1 cut(s)	809
MspI	CCGG	2 cut(s)	137, 896
MspR9I	CCNGG	2 cut(s)	386, 541
MunI	CAATTG	1 cut(s)	550
Mva1269I	GAATGC	2 cut(s)	456, 582
MvaI	CCWGG	2 cut(s)	386, 541
MwoI	GCNNNNNNNGC	4 cut(s)	246, 470, 485, 554
NdeII	GATC	2 cut(s)	436, 670
NlaIII	CATG	4 cut(s)	631, 661, 793, 854
NlaIV	GGNNCC	2 cut(s)	182, 537
NmeAIII	GCCGAG	1 cut(s)	166
NmuCI	GTSAC	2 cut(s)	128, 465
PceI	AGGCCT	1 cut(s)	526
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PctI	GAATGC	2 cut(s)	456, 582
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	4 cut(s)	147, 383, 559, 811
PleI	GAGTC	4 cut(s)	62, 125, 323, 960
PmaCI	CACGTG	1 cut(s)	217
PmlI	CACGTG	1 cut(s)	217
PpsI	GAGTC	4 cut(s)	62, 125, 323, 960
Ppu21I	YACGTR	1 cut(s)	217
PshBI	ATTAAT	1 cut(s)	345
Psp6I	CCWGG	2 cut(s)	384, 539
PspCI	CACGTG	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	10
PspGI	CCWGG	2 cut(s)	384, 539
PspN4I	GGNNCC	2 cut(s)	182, 537
PspPI	GGNCC	1 cut(s)	239
PstNI	CAGNNNCTG	1 cut(s)	919
PvuII	CAGCTG	1 cut(s)	809
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SalI	GTCGAC	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	315, 345
SatI	GCNGC	4 cut(s)	146, 382, 558, 810
Sau3AI	GATC	2 cut(s)	436, 670
Sau96I	GGNCC	1 cut(s)	239
SchI	GAGTC	4 cut(s)	62, 125, 323, 961
ScrFI	CCNGG	2 cut(s)	386, 541
SfaNI	GCATC	1 cut(s)	888
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	5 cut(s)	294, 550, 613, 704, 726
SseBI	AGGCCT	1 cut(s)	526
SsiI	CCGC	3 cut(s)	326, 373, 865
SspMI	CTAG	3 cut(s)	470, 528, 1054
StuI	AGGCCT	1 cut(s)	526
StyD4I	CCNGG	2 cut(s)	384, 539
TaaI	ACNGT	3 cut(s)	170, 691, 767
TaiI	ACGT	2 cut(s)	105, 219
TaqI	TCGA	2 cut(s)	60, 590
TasI	AATT	5 cut(s)	294, 550, 613, 704, 726
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	2 cut(s)	315, 345
Tru9I	TTAA	2 cut(s)	315, 345
TscAI	CASTG	1 cut(s)	496
TseFI	GTSAC	2 cut(s)	128, 465
TseI	GCWGC	4 cut(s)	145, 381, 557, 809
Tsp45I	GTSAC	2 cut(s)	128, 465
TspDTI	ATGAA	1 cut(s)	1044
TspRI	CASTG	1 cut(s)	496
VspI	ATTAAT	1 cut(s)	345
XapI	RAATTY	2 cut(s)	613, 704
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	3 cut(s)	470, 528, 1054

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.