Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006138

Physical Location & Seq

Genomic Coordinates Forward (+)

52921377 .. 52923944

Gene Structure 2568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0430800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGATCAAAGCGCTCGCTTTTCTTCTGCTCCTAGTCGCCTTCGTCTCCACGCCTTCACAAGCCAAATTAAGCATCCTGCAACCCCAACCTGCCGCAGGCTTCAACGTCAGCCATGTACAGAGTGCCGGGAGTTGCTCTTATACGGTTGATATAACCACCAGCTGCTCCTCAACGAGGTACACAAGGGATCAAATCAGTATCTCATTCGGGGATGTTTATGGCAACCAGATTTATGCTCCGCGACTAGACGATCCATCCTCGAGAACGTTTGAGAGTTGTTCTACGGACACATTTGAGATATATGGACCCTGTGCATACCAAATCTGCTATGTCTATCTTTACAGAACAGGACCAGATGGTTGGAAACCGGAGAGTGTGAAAATCTATAGTCATAATTCCAGGGCTGTTTCGTTCTACTACAATACCTTCATTCCCAGTGACATTTGGTATGGATTCAACTTGTGCCAGAATGCTTCCTCTTCACACCGGCAATCTGCTTATGGATGGTTTATATATGTTTTAGTTGGGCTTCTTGTGTCGCTTCTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

183

Amino Acids

20.44

Weight (kDa)

6.79

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATS3	PF06232	40 - 155	4.8e-53	Embryo-specific protein 3, (ATS3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40405 AT5G40405
fragaria_vesca	FvH4_4g32050
malus_domestica	MD13G1079400.v1.1 MD16G1079200.v1.1 MD16G1079300.v1.1
prunus_persica	Prupe.1G267400_v2.0.a1
pyrus_communis	pycom13g06910 pycom16g06850
rosa_chinensis	RchiOBHm_Chr1g0381771 RchiOBHm_Chr4g0440691 RchiOBHm_Chr4g0440711
rosa_laevigata	RLG00000006158 RLG00000008805 RLG00000026207
rosa_multiflora	Rmu_sc0000463.1_g000002 Rmu_sc0008418.1_g000010
rosa_roxburghii	Rroxscaffold_5G00381500 Rroxscaffold_7G00185760
rosa_rugosa	Rorug01G0430800 Rorug04G0327600
rosa_samantha	Rh1BG411600 Rh4AG379300 Rh4BG131000 Rh4BG392100
rosa_wichuraiana	Rw1G039640 Rw4G011000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	97
AccII	CGCG	1 cut(s)	241
AciI	CCGC	2 cut(s)	93, 239
AclI	AACGTT	1 cut(s)	266
AclWI	GGATC	2 cut(s)	195, 245
AfaI	GTAC	2 cut(s)	117, 179
AfeI	AGCGCT	1 cut(s)	12
AfiI	CCNNNNNNNGG	2 cut(s)	95, 174
AgsI	TTSAA	2 cut(s)	103, 457
AjnI	CCWGG	1 cut(s)	398
AluBI	AGCT	1 cut(s)	162
AluI	AGCT	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	2 cut(s)	195, 245
Ama87I	CYCGRG	1 cut(s)	259
Aor51HI	AGCGCT	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	162
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	2 cut(s)	305, 350
AsuC2I	CCSGG	1 cut(s)	127
AvaI	CYCGRG	1 cut(s)	259
AvaII	GGWCC	2 cut(s)	305, 350
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	3 cut(s)	262, 350, 498
BciT130I	CCWGG	1 cut(s)	400
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	2 cut(s)	32, 245
BfmI	CTRYAG	1 cut(s)	385
BfoI	RGCGCY	1 cut(s)	14
BfuAI	ACCTGC	1 cut(s)	97
BisI	GCNGC	2 cut(s)	93, 163
BlsI	GCNGC	2 cut(s)	94, 164
Bme1390I	CCNGG	2 cut(s)	127, 400
Bme18I	GGWCC	2 cut(s)	305, 350
BmeT110I	CYCGRG	1 cut(s)	259
BmgT120I	GGNCC	2 cut(s)	305, 350
BmiI	GGNNCC	1 cut(s)	307
BmrFI	CCNGG	2 cut(s)	127, 400
BmrI	ACTGGG	1 cut(s)	429
BmsI	GCATC	1 cut(s)	81
BmuI	ACTGGG	1 cut(s)	429
BpuMI	CCSGG	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	399
BsaWI	WCCGGW	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 174
Bse118I	RCCGGY	1 cut(s)	486
Bse1I	ACTGG	1 cut(s)	435
BseBI	CCWGG	1 cut(s)	400
BseDI	CCNNGG	1 cut(s)	399
BseGI	GGATG	4 cut(s)	72, 217, 254, 509
BseLI	CCNNNNNNNGG	2 cut(s)	95, 174
BseNI	ACTGG	1 cut(s)	435
BseRI	GAGGAG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	149
Bsh1236I	CGCG	1 cut(s)	241
BsiHKCI	CYCGRG	1 cut(s)	259
BsiSI	CCGG	3 cut(s)	126, 368, 487
BslI	CCNNNNNNNGG	2 cut(s)	95, 174
BsmAI	GTCTC	1 cut(s)	49
BsmBI	CGTCTC	1 cut(s)	49
BsmI	GAATGC	1 cut(s)	475
BsoBI	CYCGRG	1 cut(s)	259
Bsp1407I	TGTACA	1 cut(s)	115
Bsp143I	GATC	3 cut(s)	3, 187, 250
BspACI	CCGC	2 cut(s)	93, 239
BspFNI	CGCG	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	307
BspMI	ACCTGC	1 cut(s)	97
BspPI	GGATC	2 cut(s)	195, 245
BsrFI	RCCGGY	1 cut(s)	486
BsrGI	TGTACA	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	435
BssAI	RCCGGY	1 cut(s)	486
BssECI	CCNNGG	1 cut(s)	399
BssMI	GATC	3 cut(s)	3, 187, 250
Bst2UI	CCWGG	1 cut(s)	400
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	484
BstAUI	TGTACA	1 cut(s)	115
BstC8I	GCNNGC	2 cut(s)	15, 97
BstENI	CCTNNNNNAGG	2 cut(s)	93, 172
BstF5I	GGATG	4 cut(s)	72, 217, 254, 509
BstFNI	CGCG	1 cut(s)	241
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	3 cut(s)	6, 190, 253
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	3 cut(s)	3, 187, 250
BstNI	CCWGG	1 cut(s)	400
BstSCI	CCNGG	2 cut(s)	125, 398
BstSFI	CTRYAG	1 cut(s)	385
BstUI	CGCG	1 cut(s)	241
BstV1I	GCAGC	1 cut(s)	149
BstXI	CCANNNNNNTGG	1 cut(s)	360
BtsCI	GGATG	4 cut(s)	72, 217, 254, 509
BtsIMutI	CAGTG	1 cut(s)	442
BveI	ACCTGC	1 cut(s)	97
Cac8I	GCNNGC	2 cut(s)	15, 97
CfoI	GCGC	1 cut(s)	13
Cfr10I	RCCGGY	1 cut(s)	486
Cfr13I	GGNCC	2 cut(s)	305, 350
Csp6I	GTAC	2 cut(s)	116, 178
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	6 cut(s)	62, 99, 111, 162, 404, 529
CviKI_1	RGCY	6 cut(s)	62, 99, 111, 162, 404, 529
CviQI	GTAC	2 cut(s)	116, 178
DpnI	GATC	3 cut(s)	5, 189, 252
DpnII	GATC	3 cut(s)	3, 187, 250
Eam1104I	CTCTTC	1 cut(s)	484
EarI	CTCTTC	1 cut(s)	484
Eco47I	GGWCC	2 cut(s)	305, 350
Eco47III	AGCGCT	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	259
EcoNI	CCTNNNNNAGG	2 cut(s)	93, 172
EcoRII	CCWGG	1 cut(s)	398
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	1 cut(s)	116
FatI	CATG	1 cut(s)	112
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	93, 163
FokI	GGATG	4 cut(s)	59, 224, 241, 516
Fsp4HI	GCNGC	2 cut(s)	93, 163
FspBI	CTAG	2 cut(s)	32, 245
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	2 cut(s)	93, 163
HaeII	RGCGCY	1 cut(s)	14
HapII	CCGG	3 cut(s)	126, 368, 487
HhaI	GCGC	1 cut(s)	13
Hin1II	CATG	1 cut(s)	116
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HinfI	GANTC	1 cut(s)	453
HpaII	CCGG	3 cut(s)	126, 368, 487
Hpy166II	GTNNAC	1 cut(s)	180
Hpy188III	TCNNGA	1 cut(s)	261
Hpy8I	GTNNAC	1 cut(s)	180
HpyAV	CCTTC	3 cut(s)	49, 63, 436
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	2 cut(s)	105, 266
HpyCH4V	TGCA	2 cut(s)	79, 314
HpySE526I	ACGT	2 cut(s)	105, 266
Hsp92II	CATG	1 cut(s)	116
HspAI	GCGC	1 cut(s)	11
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 187, 250
LmnI	GCTCC	3 cut(s)	33, 170, 241
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	2 cut(s)	32, 245
MaeII	ACGT	2 cut(s)	105, 266
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	3 cut(s)	5, 189, 252
MboI	GATC	3 cut(s)	3, 187, 250
MboII	GAAGA	2 cut(s)	14, 471
MluCI	AATT	2 cut(s)	65, 394
MmeI	TCCRAC	1 cut(s)	341
MnlI	CCTC	4 cut(s)	168, 178, 268, 487
MseI	TTAA	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	162
MspI	CCGG	3 cut(s)	126, 368, 487
MspR9I	CCNGG	2 cut(s)	127, 400
Mva1269I	GAATGC	1 cut(s)	475
MvaI	CCWGG	1 cut(s)	400
MvnI	CGCG	1 cut(s)	241
NciI	CCSGG	1 cut(s)	127
NdeII	GATC	3 cut(s)	3, 187, 250
NlaIII	CATG	1 cut(s)	116
NlaIV	GGNNCC	1 cut(s)	307
NmuCI	GTSAC	1 cut(s)	437
PaeR7I	CTCGAG	1 cut(s)	259
PctI	GAATGC	1 cut(s)	475
PfeI	GAWTC	1 cut(s)	453
PkrI	GCNGC	2 cut(s)	94, 164
Psp1406I	AACGTT	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	398
PspN4I	GGNNCC	1 cut(s)	307
PspPI	GGNCC	2 cut(s)	305, 350
PvuII	CAGCTG	1 cut(s)	162
RsaI	GTAC	2 cut(s)	117, 179
RsaNI	GTAC	2 cut(s)	116, 178
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	2 cut(s)	93, 163
Sau3AI	GATC	3 cut(s)	3, 187, 250
Sau96I	GGNCC	2 cut(s)	305, 350
ScrFI	CCNGG	2 cut(s)	127, 400
SetI	ASST	6 cut(s)	91, 108, 164, 179, 269, 428
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	385
Sfr274I	CTCGAG	1 cut(s)	259
SinI	GGWCC	2 cut(s)	305, 350
SlaI	CTCGAG	1 cut(s)	259
SmlI	CTYRAG	1 cut(s)	259
SmoI	CTYRAG	1 cut(s)	259
Sse9I	AATT	2 cut(s)	65, 394
SsiI	CCGC	2 cut(s)	93, 239
SspMI	CTAG	2 cut(s)	32, 245
StyD4I	CCNGG	2 cut(s)	125, 398
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	2 cut(s)	108, 269
TaqI	TCGA	1 cut(s)	260
TasI	AATT	2 cut(s)	65, 394
TatI	WGTACW	1 cut(s)	115
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	453
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	1 cut(s)	162
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	1 cut(s)	418
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	1 cut(s)	442
VpaK11BI	GGWCC	2 cut(s)	305, 350
XagI	CCTNNNNNAGG	2 cut(s)	93, 172
XhoI	CTCGAG	1 cut(s)	259
XspI	CTAG	2 cut(s)	32, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.