Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006138

Physical Location & Seq

Genomic Coordinates Forward (+)

53323086 .. 53325930

Gene Structure 2845 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG411600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1854 bp

ATGATGAGCTCTTTGAGATGCATTGCAAAACACCCAACAATTGCACTAGTAGACTCATCCACCACTCTCAAAGATCTCAAGCAAATCCACACCCAACTCCTCATTAACAGTGTTCTCAACGATCCTCACCTCTCCGGCAACTTTGTTGCCACCATTGCTCTCCGGAACCCCAACAATTTGGAATATTCCAACCGAGTCCTGGACCAATGTGACAACCCATCTCTCTTCGCCTTCAACTCCATGATCAGGGCCTATTCCAAAAGCTCCACACCCAGTAAAAGCTTTCACTTTTACAGCAGAATCCTCCATTCACGTAACAATCTTCTACCCGATAACTACACATTTAACTTCTTGGTTCGCACTTCTGCGCAGCTTTCGTCATTTGAGACTGGTCCTTCGGTCCATGGTGCATTAGTAAAACATGGATTTGAGAATGACCCGCATGTTCAAAGTGCTTTAATATTTATGTATGCAGAATTGGGTTGCTTGGAGCAATGTCATAGAGTGTTTAGCAGCATTGCTGATCCTGATTTGGTGTGTCAGACTGCTATTGTGAGCGCTTGTGCTAAATGTGGGGATGTAGATTATGCACGGTTATTGTTCGATGAAATGCCTGAGAGAGACCCCATTGCTTGGAATGCGATGATTGCGGGGTATGCGCAATGTGGGAAGTCTAGGGAAGCATTGGGTTTGTTCCATTTGATGCAAATGGAGGGTGTGAGGGTGAATGAGGTGTGTATGGTTTCAGTGTTATCGGCGTGTTGTCACTTGGGGGCACTGGATCAAGGGAGATGGGCTCATGCATATATAGAGAGAAACAAGGTGAGGATGACAGTGACATTGGGGACTGCACTGCTTGACATGTATGCAAAATGTGGGAACATGAGTAAGGCCATGGAAGCGTTTTGGGGGATGAAGGAAAAGAATGTGTATACGTGGAGTGTTGCCTTGGGGGGACTAGCTATGAATGGCTTTGGTGAGAAGTGTCTTGAGCTTTTCTCAGTCATGGAGAAAGAAGGCGTTCGACCAAATGAAGTTACCTTTGTTTCGGTTCTTAGGGGTTGTACTGTGGTTGGACTAGTGGAGGAAGGTCGTCGACATTTTGACTCGATGAAAGAATTGTATGGGATTGAACCTCAGCTAGAGCATTATGGGTGCATTGTTGACTTATATGGTCGAGCTGGGCGTTTAGATGAAGCCCTGAACTTCATTAACAACATGCCAATGAAGCCTCATGCGGGTGCTTGGGGGGCTTTGCTCCATGCTAGTAGAATGTATCGGAATATGGAACTGGGTGAGCTTGCGTCGAGCAAGATAGTAGAACTCGAGGACAGGAATCACGGTGCTTATGTGCTTTTGTCCAATATATATGCGGATTCCAAGCTTTATGATGGAGTTAGTAATGTGCGGCAAAATATGAAGGCTAAAGGTGTGAGGAAGCTTCCTGGTTGTAGTGTCATAGAAGTTGATGGGGAAGTTCATGAATTCTTTGCAGGGGAAGACAATTCTCATCCGAGGTATAATGAAATCGAAATGATGCTGGAAGAAATCTCCCGGCGCCTGAAATTAGCAGGTTATGTTGCCAATACCAACCCTGTGCTGTTCGATATAGAAGAAGAAGAGAAAGAGGATGCATTGTTTAAACACAGCGAGAAGTTTGCCATTGCTTTTGGTTTGATCAGTTTGAGAGAAGGAGTACCCATTAGGATTGTGAAGAACCTCAGGGTCTGTTGGGATTGTCATGATGTAACAAAAATGATATCCAAGGTTTTCAATAGAGTGATTATAGTAAGAGATAGAAATAGGTTTCACCATTTTCAAAATGGTGAGTGCTCTTGTAAGGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

617

Amino Acids

69.56

Weight (kDa)

6.38

Isoelectric Point (pI)

37.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	208 - 256	1.7e-09	PPR repeat family
PPR	PF01535	211 - 240	5.3e-08	PPR repeat
PPR_2	PF13041	308 - 355	1.4e-08	PPR repeat family
E_motif	PF20431	426 - 488	1.4e-19	E motif
DYW_deaminase	PF14432	525 - 617	3.4e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40405 AT5G40405
fragaria_vesca	FvH4_4g32050
malus_domestica	MD13G1079400.v1.1 MD16G1079200.v1.1 MD16G1079300.v1.1
prunus_persica	Prupe.1G267400_v2.0.a1
pyrus_communis	pycom13g06910 pycom16g06850
rosa_chinensis	RchiOBHm_Chr1g0381771 RchiOBHm_Chr4g0440691 RchiOBHm_Chr4g0440711
rosa_laevigata	RLG00000006158 RLG00000008805 RLG00000026207
rosa_multiflora	Rmu_sc0000463.1_g000002 Rmu_sc0008418.1_g000010
rosa_roxburghii	Rroxscaffold_5G00381500 Rroxscaffold_7G00185760
rosa_rugosa	Rorug01G0430800 Rorug04G0327600
rosa_samantha	Rh1BG411600 Rh4AG379300 Rh4BG131000 Rh4BG392100
rosa_wichuraiana	Rw1G039640 Rw4G011000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	369, 660
Acc36I	ACCTGC	1 cut(s)	1562
AccB1I	GGYRCC	1 cut(s)	1557
AccB7I	CCANNNNNTGG	1 cut(s)	633
AccI	GTMKAC	3 cut(s)	51, 932, 1096
AccIII	TCCGGA	1 cut(s)	162
AciI	CCGC	5 cut(s)	440, 650, 1238, 1373, 1408
AclWI	GGATC	3 cut(s)	116, 518, 789
AcsI	RAATTY	1 cut(s)	1484
AcyI	GRCGYC	1 cut(s)	1558
AfaI	GTAC	2 cut(s)	1066, 1698
AfeI	AGCGCT	1 cut(s)	559
AfiI	CCNNNNNNNGG	4 cut(s)	199, 246, 633, 1238
AflIII	ACRYGT	1 cut(s)	861
AgsI	TTSAA	5 cut(s)	235, 449, 1133, 1774, 1820
AhlI	ACTAGT	2 cut(s)	46, 1078
AjnI	CCWGG	2 cut(s)	198, 1444
Alw21I	GWGCWC	2 cut(s)	11, 1835
Alw26I	GTCTC	2 cut(s)	380, 615
AlwI	GGATC	3 cut(s)	116, 518, 789
AlwNI	CAGNNNCTG	1 cut(s)	1728
Ama87I	CYCGRG	1 cut(s)	1325
Aor13HI	TCCGGA	1 cut(s)	162
Aor51HI	AGCGCT	1 cut(s)	559
AoxI	GGCC	2 cut(s)	249, 891
ApeKI	GCWGC	2 cut(s)	370, 513
ApoI	RAATTY	1 cut(s)	1484
ArsI	GACNNNNNNTTYG	2 cut(s)	379, 411
Asp700I	GAANNNNTTC	1 cut(s)	1020
AspLEI	GCGC	4 cut(s)	370, 560, 661, 1560
AspS9I	GGNCC	4 cut(s)	202, 249, 392, 400
AsuC2I	CCSGG	1 cut(s)	1555
AsuHPI	GGTGA	7 cut(s)	119, 736, 835, 989, 1307, 1802, 1838
AvaI	CYCGRG	1 cut(s)	1325
AvaII	GGWCC	3 cut(s)	202, 392, 400
AxyI	CCTNAGG	1 cut(s)	1721
BaeGI	GKGCMC	1 cut(s)	778
BanI	GGYRCC	1 cut(s)	1557
BanII	GRGCYC	2 cut(s)	11, 799
BbsI	GAAGAC	1 cut(s)	1506
Bbv12I	GWGCWC	2 cut(s)	11, 1835
BbvCI	CCTCAGC	1 cut(s)	1137
BbvI	GCAGC	2 cut(s)	382, 525
BccI	CCATC	4 cut(s)	226, 786, 1385, 1463
BcgI	CGANNNNNNTGC	2 cut(s)	1640, 1674
BciT130I	CCWGG	2 cut(s)	200, 1446
BclI	TGATCA	2 cut(s)	243, 1677
BcnI	CCSGG	1 cut(s)	1555
BcoDI	GTCTC	2 cut(s)	380, 615
BcuI	ACTAGT	2 cut(s)	46, 1078
BfaI	CTAG	6 cut(s)	47, 675, 959, 1079, 1142, 1266
BfoI	RGCGCY	2 cut(s)	561, 1561
BfuAI	ACCTGC	1 cut(s)	1562
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	3 cut(s)	371, 514, 1409
BlsI	GCNGC	3 cut(s)	372, 515, 1410
Bme1390I	CCNGG	3 cut(s)	200, 1446, 1555
Bme18I	GGWCC	3 cut(s)	202, 392, 400
BmeT110I	CYCGRG	1 cut(s)	1325
BmgT120I	GGNCC	4 cut(s)	202, 249, 392, 400
BmiI	GGNNCC	2 cut(s)	167, 1559
BmrFI	CCNGG	3 cut(s)	200, 1446, 1555
BmrI	ACTGGG	2 cut(s)	267, 1301
BmsI	GCATC	4 cut(s)	8, 693, 1527, 1621
BmuI	ACTGGG	2 cut(s)	267, 1301
BpiI	GAAGAC	1 cut(s)	1506
BplI	GAGNNNNNCTC	4 cut(s)	781, 813, 983, 1015
Bpu10I	CCTNAGC	1 cut(s)	1137
BpuEI	CTTGAG	2 cut(s)	62, 1010
BpuMI	CCSGG	1 cut(s)	1555
BsaAI	YACGTR	2 cut(s)	314, 936
BsaHI	GRCGYC	1 cut(s)	1558
BsaI	GGTCTC	1 cut(s)	615
BsaJI	CCNNGG	5 cut(s)	403, 894, 948, 1514, 1764
BsaWI	WCCGGW	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	4 cut(s)	199, 246, 633, 1238
Bse1I	ACTGG	4 cut(s)	273, 394, 783, 1296
Bse21I	CCTNAGG	1 cut(s)	1721
Bse3DI	GCAATG	7 cut(s)	21, 153, 500, 516, 627, 668, 1662
BseAI	TCCGGA	1 cut(s)	162
BseBI	CCWGG	2 cut(s)	200, 1446
BseDI	CCNNGG	5 cut(s)	403, 894, 948, 1514, 1764
BseGI	GGATG	6 cut(s)	56, 583, 834, 918, 1510, 1636
BseLI	CCNNNNNNNGG	4 cut(s)	199, 246, 633, 1238
BseMI	GCAATG	7 cut(s)	21, 153, 500, 516, 627, 668, 1662
BseMII	CTCAG	4 cut(s)	606, 1014, 1151, 1735
BseNI	ACTGG	4 cut(s)	273, 394, 783, 1296
BseRI	GAGGAG	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	778
BseXI	GCAGC	2 cut(s)	382, 525
BseYI	CCCAGC	1 cut(s)	1181
BsgI	GTGCAG	1 cut(s)	834
BshFI	GGCC	2 cut(s)	251, 893
BshNI	GGYRCC	1 cut(s)	1557
BsiHKAI	GWGCWC	2 cut(s)	11, 1835
BsiHKCI	CYCGRG	1 cut(s)	1325
BsiSI	CCGG	3 cut(s)	135, 163, 1555
BslFI	GGGAC	2 cut(s)	859, 969
BslI	CCNNNNNNNGG	4 cut(s)	199, 246, 633, 1238
BsmAI	GTCTC	2 cut(s)	380, 615
BsmFI	GGGAC	2 cut(s)	859, 969
BsmI	GAATGC	1 cut(s)	643
BsnI	GGCC	2 cut(s)	251, 893
Bso31I	GGTCTC	1 cut(s)	615
BsoBI	CYCGRG	1 cut(s)	1325
Bsp1286I	GDGCHC	4 cut(s)	11, 778, 799, 1835
Bsp13I	TCCGGA	1 cut(s)	162
Bsp143I	GATC	6 cut(s)	73, 121, 243, 523, 781, 1677
Bsp19I	CCATGG	2 cut(s)	403, 894
BspACI	CCGC	5 cut(s)	440, 650, 1238, 1373, 1408
BspANI	GGCC	2 cut(s)	251, 893
BspCNI	CTCAG	4 cut(s)	607, 1013, 1150, 1734
BspEI	TCCGGA	1 cut(s)	162
BspHI	TCATGA	2 cut(s)	1480, 1741
BspLI	GGNNCC	2 cut(s)	167, 1559
BspMI	ACCTGC	1 cut(s)	1562
BspPI	GGATC	3 cut(s)	116, 518, 789
BspT107I	GGYRCC	1 cut(s)	1557
BspTNI	GGTCTC	1 cut(s)	615
BsrDI	GCAATG	7 cut(s)	21, 153, 500, 516, 627, 668, 1662
BsrI	ACTGG	4 cut(s)	273, 394, 783, 1296
BssECI	CCNNGG	5 cut(s)	403, 894, 948, 1514, 1764
BssMI	GATC	6 cut(s)	73, 121, 243, 523, 781, 1677
BssNAI	GTATAC	1 cut(s)	933
BssNI	GRCGYC	1 cut(s)	1558
BssT1I	CCWWGG	4 cut(s)	403, 894, 948, 1764
Bst1107I	GTATAC	1 cut(s)	933
Bst2UI	CCWGG	2 cut(s)	200, 1446
Bst4CI	ACNGT	5 cut(s)	110, 594, 835, 1069, 1343
Bst6I	CTCTTC	2 cut(s)	230, 1614
BstACI	GRCGYC	1 cut(s)	1558
BstBAI	YACGTR	2 cut(s)	314, 936
BstC8I	GCNNGC	1 cut(s)	1302
BstDEI	CTNAG	5 cut(s)	615, 1000, 1055, 1137, 1721
BstDSI	CCRYGG	2 cut(s)	403, 894
BstF5I	GGATG	6 cut(s)	56, 583, 834, 918, 1510, 1636
BstH2I	RGCGCY	2 cut(s)	561, 1561
BstHHI	GCGC	4 cut(s)	370, 560, 661, 1560
BstKTI	GATC	6 cut(s)	76, 124, 246, 526, 784, 1680
BstMAI	GTCTC	2 cut(s)	380, 615
BstMBI	GATC	6 cut(s)	73, 121, 243, 523, 781, 1677
BstMWI	GCNNNNNNNGC	7 cut(s)	155, 638, 647, 656, 899, 1228, 1250
BstNI	CCWGG	2 cut(s)	200, 1446
BstNSI	RCATGY	3 cut(s)	446, 865, 1222
BstSCI	CCNGG	3 cut(s)	198, 1444, 1553
BstSLI	GKGCMC	1 cut(s)	778
BstV1I	GCAGC	2 cut(s)	382, 525
BstV2I	GAAGAC	1 cut(s)	1506
BstX2I	RGATCY	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	73
BstZ17I	GTATAC	1 cut(s)	933
Bsu36I	CCTNAGG	1 cut(s)	1721
BsuRI	GGCC	2 cut(s)	251, 893
BtgI	CCRYGG	2 cut(s)	403, 894
BtgZI	GCGATG	1 cut(s)	656
BtsCI	GGATG	6 cut(s)	56, 583, 834, 918, 1510, 1636
BtsI	GCAGTG	1 cut(s)	851
BtsIMutI	CAGTG	5 cut(s)	115, 753, 776, 840, 851
BveI	ACCTGC	1 cut(s)	1562
Cac8I	GCNNGC	1 cut(s)	1302
CaiI	CAGNNNCTG	1 cut(s)	1728
CciI	TCATGA	2 cut(s)	1480, 1741
CfoI	GCGC	4 cut(s)	370, 560, 661, 1560
Cfr13I	GGNCC	4 cut(s)	202, 249, 392, 400
CseI	GACGC	1 cut(s)	1293
Csp6I	GTAC	2 cut(s)	1065, 1697
CviQI	GTAC	2 cut(s)	1065, 1697
DdeI	CTNAG	5 cut(s)	615, 1000, 1055, 1137, 1721
DinI	GGCGCC	1 cut(s)	1559
DpnI	GATC	6 cut(s)	75, 123, 245, 525, 783, 1679
DpnII	GATC	6 cut(s)	73, 121, 243, 523, 781, 1677
DraI	TTTAAA	1 cut(s)	1642
Eam1104I	CTCTTC	2 cut(s)	230, 1614
EarI	CTCTTC	2 cut(s)	230, 1614
Ecl136II	GAGCTC	1 cut(s)	9
Eco130I	CCWWGG	4 cut(s)	403, 894, 948, 1764
Eco24I	GRGCYC	2 cut(s)	11, 799
Eco31I	GGTCTC	1 cut(s)	615
Eco32I	GATATC	1 cut(s)	1761
Eco47I	GGWCC	3 cut(s)	202, 392, 400
Eco47III	AGCGCT	1 cut(s)	559
Eco53kI	GAGCTC	1 cut(s)	9
Eco81I	CCTNAGG	1 cut(s)	1721
Eco88I	CYCGRG	1 cut(s)	1325
EcoICRI	GAGCTC	1 cut(s)	9
EcoO109I	RGGNCCY	1 cut(s)	249
EcoRI	GAATTC	1 cut(s)	1484
EcoRII	CCWGG	2 cut(s)	198, 1444
EcoRV	GATATC	1 cut(s)	1761
EcoT14I	CCWWGG	4 cut(s)	403, 894, 948, 1764
EcoT22I	ATGCAT	3 cut(s)	23, 805, 1636
EcoT38I	GRGCYC	2 cut(s)	11, 799
EgeI	GGCGCC	1 cut(s)	1559
EheI	GGCGCC	1 cut(s)	1559
ErhI	CCWWGG	4 cut(s)	403, 894, 948, 1764
FaqI	GGGAC	2 cut(s)	859, 969
FauI	CCCGC	3 cut(s)	447, 643, 1231
FbaI	TGATCA	2 cut(s)	243, 1677
FblI	GTMKAC	3 cut(s)	51, 932, 1096
Fnu4HI	GCNGC	3 cut(s)	371, 514, 1409
FokI	GGATG	6 cut(s)	43, 590, 841, 925, 1497, 1643
FriOI	GRGCYC	2 cut(s)	11, 799
Fsp4HI	GCNGC	3 cut(s)	371, 514, 1409
FspBI	CTAG	6 cut(s)	47, 675, 959, 1079, 1142, 1266
FspI	TGCGCA	2 cut(s)	369, 660
GlaI	GCGC	4 cut(s)	369, 559, 660, 1559
GluI	GCNGC	3 cut(s)	371, 514, 1409
GsaI	CCCAGC	1 cut(s)	1185
HaeII	RGCGCY	2 cut(s)	561, 1561
HaeIII	GGCC	2 cut(s)	251, 893
HapII	CCGG	3 cut(s)	135, 163, 1555
HgaI	GACGC	1 cut(s)	1293
HhaI	GCGC	4 cut(s)	370, 560, 661, 1560
Hin1I	GRCGYC	1 cut(s)	1558
Hin6I	GCGC	4 cut(s)	368, 558, 659, 1558
HinP1I	GCGC	4 cut(s)	368, 558, 659, 1558
HincII	GTYRAC	2 cut(s)	1097, 1165
HindII	GTYRAC	2 cut(s)	1097, 1165
HindIII	AAGCTT	3 cut(s)	280, 1382, 1439
HinfI	GANTC	6 cut(s)	53, 195, 300, 1106, 1336, 1376
HpaII	CCGG	3 cut(s)	135, 163, 1555
HphI	GGTGA	7 cut(s)	119, 736, 835, 989, 1307, 1802, 1838
Hpy166II	GTNNAC	4 cut(s)	52, 933, 1097, 1165
Hpy188I	TCNGA	3 cut(s)	543, 1281, 1515
Hpy188III	TCNNGA	5 cut(s)	163, 527, 989, 1481, 1742
Hpy8I	GTNNAC	4 cut(s)	52, 933, 1097, 1165
Hpy99I	CGWCG	2 cut(s)	1098, 1309
HpyAV	CCTTC	7 cut(s)	241, 405, 910, 1010, 1082, 1414, 1685
HpyCH4III	ACNGT	5 cut(s)	110, 594, 835, 1069, 1343
HpyCH4IV	ACGT	2 cut(s)	313, 935
HpyF10VI	GCNNNNNNNGC	7 cut(s)	155, 638, 647, 656, 899, 1228, 1250
HpyF3I	CTNAG	5 cut(s)	615, 1000, 1055, 1137, 1721
HpySE526I	ACGT	2 cut(s)	313, 935
Hsp92I	GRCGYC	1 cut(s)	1558
HspAI	GCGC	4 cut(s)	368, 558, 659, 1558
KasI	GGCGCC	1 cut(s)	1557
Kpn2I	TCCGGA	1 cut(s)	162
Ksp22I	TGATCA	2 cut(s)	243, 1677
Kzo9I	GATC	6 cut(s)	73, 121, 243, 523, 781, 1677
LmnI	GCTCC	3 cut(s)	269, 490, 1263
Lsp1109I	GCAGC	2 cut(s)	382, 525
LweI	GCATC	4 cut(s)	8, 693, 1527, 1621
MaeI	CTAG	6 cut(s)	47, 675, 959, 1079, 1142, 1266
MaeII	ACGT	2 cut(s)	313, 935
MaeIII	GTNAC	6 cut(s)	209, 314, 764, 835, 1036, 1747
MalI	GATC	6 cut(s)	75, 123, 245, 525, 783, 1679
MboI	GATC	6 cut(s)	73, 121, 243, 523, 781, 1677
MboII	GAAGA	8 cut(s)	217, 314, 1511, 1556, 1625, 1628, 1631, 1726
MfeI	CAATTG	1 cut(s)	39
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	4 cut(s)	11, 778, 799, 1835
MluCI	AATT	7 cut(s)	39, 175, 476, 1118, 1484, 1504, 1565
Mly113I	GGCGCC	1 cut(s)	1558
MlyI	GAGTC	3 cut(s)	47, 204, 1100
MmeI	TCCRAC	2 cut(s)	213, 1054
Mph1103I	ATGCAT	3 cut(s)	23, 805, 1636
MroI	TCCGGA	1 cut(s)	162
MroXI	GAANNNNTTC	1 cut(s)	1020
MseI	TTAA	5 cut(s)	105, 345, 458, 1212, 1641
MslI	CAYNNNNRTG	2 cut(s)	1223, 1239
MspI	CCGG	3 cut(s)	135, 163, 1555
MspR9I	CCNGG	3 cut(s)	200, 1446, 1555
MssI	GTTTAAAC	1 cut(s)	1642
MunI	CAATTG	1 cut(s)	39
Mva1269I	GAATGC	1 cut(s)	643
MvaI	CCWGG	2 cut(s)	200, 1446
MwoI	GCNNNNNNNGC	7 cut(s)	155, 638, 647, 656, 899, 1228, 1250
NarI	GGCGCC	1 cut(s)	1558
NciI	CCSGG	1 cut(s)	1555
NcoI	CCATGG	2 cut(s)	403, 894
NdeII	GATC	6 cut(s)	73, 121, 243, 523, 781, 1677
NlaIV	GGNNCC	2 cut(s)	167, 1559
NmuCI	GTSAC	3 cut(s)	209, 764, 835
NsbI	TGCGCA	2 cut(s)	369, 660
NsiI	ATGCAT	3 cut(s)	23, 805, 1636
NspI	RCATGY	3 cut(s)	446, 865, 1222
PaeR7I	CTCGAG	1 cut(s)	1325
PagI	TCATGA	2 cut(s)	1480, 1741
PciI	ACATGT	1 cut(s)	861
PcsI	WCGNNNNNNNCGW	1 cut(s)	1183
PctI	GAATGC	1 cut(s)	643
PdmI	GAANNNNTTC	1 cut(s)	1020
PfeI	GAWTC	3 cut(s)	300, 1336, 1376
PflMI	CCANNNNNTGG	1 cut(s)	633
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	3 cut(s)	372, 515, 1410
PleI	GAGTC	3 cut(s)	47, 203, 1100
PluTI	GGCGCC	1 cut(s)	1561
PmeI	GTTTAAAC	1 cut(s)	1642
PpsI	GAGTC	3 cut(s)	47, 203, 1100
Ppu21I	YACGTR	2 cut(s)	314, 936
PscI	ACATGT	1 cut(s)	861
Psp124BI	GAGCTC	1 cut(s)	11
Psp6I	CCWGG	2 cut(s)	198, 1444
PspFI	CCCAGC	1 cut(s)	1181
PspGI	CCWGG	2 cut(s)	198, 1444
PspN4I	GGNNCC	2 cut(s)	167, 1559
PspPI	GGNCC	4 cut(s)	202, 249, 392, 400
PspXI	VCTCGAGB	1 cut(s)	1325
PstNI	CAGNNNCTG	1 cut(s)	1728
PsuI	RGATCY	1 cut(s)	73
RsaI	GTAC	2 cut(s)	1066, 1698
RsaNI	GTAC	2 cut(s)	1065, 1697
RseI	CAYNNNNRTG	2 cut(s)	1223, 1239
SacI	GAGCTC	1 cut(s)	11
SalI	GTCGAC	1 cut(s)	1095
SaqAI	TTAA	5 cut(s)	105, 345, 458, 1212, 1641
SatI	GCNGC	3 cut(s)	371, 514, 1409
Sau3AI	GATC	6 cut(s)	73, 121, 243, 523, 781, 1677
Sau96I	GGNCC	4 cut(s)	202, 249, 392, 400
SchI	GAGTC	3 cut(s)	47, 204, 1100
ScrFI	CCNGG	3 cut(s)	200, 1446, 1555
SduI	GDGCHC	4 cut(s)	11, 778, 799, 1835
SfaNI	GCATC	4 cut(s)	8, 693, 1527, 1621
SfoI	GGCGCC	1 cut(s)	1559
Sfr274I	CTCGAG	1 cut(s)	1325
SinI	GGWCC	3 cut(s)	202, 392, 400
SlaI	CTCGAG	1 cut(s)	1325
SmiMI	CAYNNNNRTG	2 cut(s)	1223, 1239
SmlI	CTYRAG	3 cut(s)	77, 989, 1325
SmoI	CTYRAG	3 cut(s)	77, 989, 1325
SpeI	ACTAGT	2 cut(s)	46, 1078
Sse9I	AATT	7 cut(s)	39, 175, 476, 1118, 1484, 1504, 1565
SsiI	CCGC	5 cut(s)	440, 650, 1238, 1373, 1408
SspDI	GGCGCC	1 cut(s)	1557
SspI	AATATT	2 cut(s)	185, 462
SspMI	CTAG	6 cut(s)	47, 675, 959, 1079, 1142, 1266
SstI	GAGCTC	1 cut(s)	11
StyD4I	CCNGG	3 cut(s)	198, 1444, 1553
StyI	CCWWGG	4 cut(s)	403, 894, 948, 1764
TaaI	ACNGT	5 cut(s)	110, 594, 835, 1069, 1343
TaiI	ACGT	2 cut(s)	316, 938
TaqI	TCGA	9 cut(s)	603, 1024, 1096, 1109, 1177, 1307, 1326, 1530, 1605
TaqII	GACCGA	1 cut(s)	388
TasI	AATT	7 cut(s)	39, 175, 476, 1118, 1484, 1504, 1565
TatI	WGTACW	1 cut(s)	1064
TauI	GCSGC	1 cut(s)	1411
TfiI	GAWTC	3 cut(s)	300, 1336, 1376
Tru1I	TTAA	5 cut(s)	105, 345, 458, 1212, 1641
Tru9I	TTAA	5 cut(s)	105, 345, 458, 1212, 1641
TscAI	CASTG	5 cut(s)	115, 753, 783, 840, 858
TseFI	GTSAC	3 cut(s)	209, 764, 835
TseI	GCWGC	2 cut(s)	370, 513
Tsp45I	GTSAC	3 cut(s)	209, 764, 835
TspRI	CASTG	5 cut(s)	115, 753, 783, 840, 858
Van91I	CCANNNNNTGG	1 cut(s)	633
VpaK11BI	GGWCC	3 cut(s)	202, 392, 400
XapI	RAATTY	1 cut(s)	1484
XceI	RCATGY	3 cut(s)	446, 865, 1222
XcmI	CCANNNNNNNNNTGG	2 cut(s)	196, 1820
XhoI	CTCGAG	1 cut(s)	1325
XmiI	GTMKAC	3 cut(s)	51, 932, 1096
XmnI	GAANNNNTTC	1 cut(s)	1020
XspI	CTAG	6 cut(s)	47, 675, 959, 1079, 1142, 1266
Zsp2I	ATGCAT	3 cut(s)	23, 805, 1636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.