Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G40405 AT5G40405 |
| fragaria_vesca | FvH4_4g32050 |
| malus_domestica | MD13G1079400.v1.1 MD16G1079200.v1.1 MD16G1079300.v1.1 |
| prunus_persica | Prupe.1G267400_v2.0.a1 |
| pyrus_communis | pycom13g06910 pycom16g06850 |
| rosa_chinensis | RchiOBHm_Chr1g0381771 RchiOBHm_Chr4g0440691 RchiOBHm_Chr4g0440711 |
| rosa_laevigata | RLG00000006158 RLG00000008805 RLG00000026207 |
| rosa_multiflora | Rmu_sc0000463.1_g000002 Rmu_sc0008418.1_g000010 |
| rosa_roxburghii | Rroxscaffold_5G00381500 Rroxscaffold_7G00185760 |
| rosa_rugosa | Rorug01G0430800 Rorug04G0327600 |
| rosa_samantha | Rh1BG411600 Rh4AG379300 Rh4BG131000 Rh4BG392100 |
| rosa_wichuraiana | Rw1G039640 Rw4G011000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 290 |
| AciI | CCGC | 3 cut(s) | 101, 136, 286 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AgsI | TTSAA | 1 cut(s) | 548 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 232 |
| AjnI | CCWGG | 1 cut(s) | 172 |
| AluBI | AGCT | 3 cut(s) | 28, 112, 169 |
| AluI | AGCT | 3 cut(s) | 28, 112, 169 |
| Alw21I | GWGCWC | 1 cut(s) | 563 |
| Alw26I | GTCTC | 1 cut(s) | 240 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 456 |
| Ama87I | CYCGRG | 1 cut(s) | 53 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| AsuC2I | CCSGG | 1 cut(s) | 283 |
| AsuHPI | GGTGA | 3 cut(s) | 35, 530, 566 |
| AvaI | CYCGRG | 1 cut(s) | 53 |
| AxyI | CCTNAGG | 1 cut(s) | 449 |
| BaeGI | GKGCMC | 1 cut(s) | 429 |
| Bbv12I | GWGCWC | 1 cut(s) | 563 |
| BccI | CCATC | 2 cut(s) | 113, 191 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 368, 402 |
| BciT130I | CCWGG | 1 cut(s) | 174 |
| BclI | TGATCA | 1 cut(s) | 405 |
| BcnI | CCSGG | 1 cut(s) | 283 |
| BcoDI | GTCTC | 1 cut(s) | 240 |
| BfuAI | ACCTGC | 1 cut(s) | 290 |
| BisI | GCNGC | 2 cut(s) | 137, 287 |
| BlsI | GCNGC | 2 cut(s) | 138, 288 |
| Bme1390I | CCNGG | 2 cut(s) | 174, 283 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 232 |
| BmeT110I | CYCGRG | 1 cut(s) | 53 |
| BmrFI | CCNGG | 2 cut(s) | 174, 283 |
| BmrI | ACTGGG | 1 cut(s) | 29 |
| BmsI | GCATC | 3 cut(s) | 41, 255, 349 |
| BmuI | ACTGGG | 1 cut(s) | 29 |
| BpuMI | CCSGG | 1 cut(s) | 283 |
| BsaJI | CCNNGG | 1 cut(s) | 242 |
| Bse1I | ACTGG | 1 cut(s) | 24 |
| Bse21I | CCTNAGG | 1 cut(s) | 449 |
| BseBI | CCWGG | 1 cut(s) | 174 |
| BseDI | CCNNGG | 1 cut(s) | 242 |
| BseGI | GGATG | 2 cut(s) | 238, 364 |
| BseMII | CTCAG | 1 cut(s) | 463 |
| BseNI | ACTGG | 1 cut(s) | 24 |
| BseSI | GKGCMC | 1 cut(s) | 429 |
| BseYI | CCCAGC | 1 cut(s) | 268 |
| BsiHKAI | GWGCWC | 1 cut(s) | 563 |
| BsiHKCI | CYCGRG | 1 cut(s) | 53 |
| BsiSI | CCGG | 1 cut(s) | 283 |
| BslFI | GGGAC | 1 cut(s) | 239 |
| BsmAI | GTCTC | 1 cut(s) | 240 |
| BsmFI | GGGAC | 1 cut(s) | 239 |
| BsoBI | CYCGRG | 1 cut(s) | 53 |
| Bsp1286I | GDGCHC | 2 cut(s) | 429, 563 |
| Bsp143I | GATC | 1 cut(s) | 405 |
| BspACI | CCGC | 3 cut(s) | 101, 136, 286 |
| BspCNI | CTCAG | 1 cut(s) | 462 |
| BspHI | TCATGA | 2 cut(s) | 208, 469 |
| BspMI | ACCTGC | 1 cut(s) | 290 |
| BsrI | ACTGG | 1 cut(s) | 24 |
| BssECI | CCNNGG | 1 cut(s) | 242 |
| BssMI | GATC | 1 cut(s) | 405 |
| Bst2UI | CCWGG | 1 cut(s) | 174 |
| Bst4CI | ACNGT | 1 cut(s) | 71 |
| Bst6I | CTCTTC | 1 cut(s) | 342 |
| BstC8I | GCNNGC | 1 cut(s) | 30 |
| BstDEI | CTNAG | 1 cut(s) | 449 |
| BstF5I | GGATG | 2 cut(s) | 238, 364 |
| BstKTI | GATC | 1 cut(s) | 408 |
| BstMAI | GTCTC | 1 cut(s) | 240 |
| BstMBI | GATC | 1 cut(s) | 405 |
| BstNI | CCWGG | 1 cut(s) | 174 |
| BstSCI | CCNGG | 2 cut(s) | 172, 281 |
| BstSLI | GKGCMC | 1 cut(s) | 429 |
| Bsu36I | CCTNAGG | 1 cut(s) | 449 |
| BtsCI | GGATG | 2 cut(s) | 238, 364 |
| BveI | ACCTGC | 1 cut(s) | 290 |
| Cac8I | GCNNGC | 1 cut(s) | 30 |
| CaiI | CAGNNNCTG | 1 cut(s) | 456 |
| CciI | TCATGA | 2 cut(s) | 208, 469 |
| CviAII | CATG | 2 cut(s) | 209, 470 |
| CviJI | RGCY | 5 cut(s) | 28, 112, 152, 169, 289 |
| CviKI_1 | RGCY | 5 cut(s) | 28, 112, 152, 169, 289 |
| DdeI | CTNAG | 1 cut(s) | 449 |
| DpnI | GATC | 1 cut(s) | 407 |
| DpnII | GATC | 1 cut(s) | 405 |
| DraI | TTTAAA | 1 cut(s) | 370 |
| DriI | GACNNNNNGTC | 1 cut(s) | 232 |
| Eam1104I | CTCTTC | 1 cut(s) | 342 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 232 |
| EarI | CTCTTC | 1 cut(s) | 342 |
| Eco32I | GATATC | 1 cut(s) | 489 |
| Eco81I | CCTNAGG | 1 cut(s) | 449 |
| Eco88I | CYCGRG | 1 cut(s) | 53 |
| EcoRI | GAATTC | 1 cut(s) | 212 |
| EcoRII | CCWGG | 1 cut(s) | 172 |
| EcoRV | GATATC | 1 cut(s) | 489 |
| EcoT22I | ATGCAT | 1 cut(s) | 364 |
| FaeI | CATG | 2 cut(s) | 212, 473 |
| FaqI | GGGAC | 1 cut(s) | 239 |
| FatI | CATG | 2 cut(s) | 208, 469 |
| FbaI | TGATCA | 1 cut(s) | 405 |
| Fnu4HI | GCNGC | 2 cut(s) | 137, 287 |
| FokI | GGATG | 2 cut(s) | 225, 371 |
| Fsp4HI | GCNGC | 2 cut(s) | 137, 287 |
| GluI | GCNGC | 2 cut(s) | 137, 287 |
| GsaI | CCCAGC | 1 cut(s) | 272 |
| HapII | CCGG | 1 cut(s) | 283 |
| Hin1II | CATG | 2 cut(s) | 212, 473 |
| HindIII | AAGCTT | 2 cut(s) | 110, 167 |
| HinfI | GANTC | 2 cut(s) | 64, 104 |
| HpaII | CCGG | 1 cut(s) | 283 |
| HphI | GGTGA | 3 cut(s) | 35, 530, 566 |
| Hpy188I | TCNGA | 2 cut(s) | 9, 243 |
| Hpy188III | TCNNGA | 3 cut(s) | 36, 209, 470 |
| HpyAV | CCTTC | 2 cut(s) | 142, 413 |
| HpyCH4III | ACNGT | 1 cut(s) | 71 |
| HpyCH4V | TGCA | 4 cut(s) | 32, 221, 362, 389 |
| HpyF3I | CTNAG | 1 cut(s) | 449 |
| Hsp92II | CATG | 2 cut(s) | 212, 473 |
| Ksp22I | TGATCA | 1 cut(s) | 405 |
| Kzo9I | GATC | 1 cut(s) | 405 |
| LweI | GCATC | 3 cut(s) | 41, 255, 349 |
| MaeIII | GTNAC | 1 cut(s) | 475 |
| MalI | GATC | 1 cut(s) | 407 |
| MboI | GATC | 1 cut(s) | 405 |
| MboII | GAAGA | 3 cut(s) | 353, 356, 359 |
| MfeI | CAATTG | 1 cut(s) | 390 |
| MhlI | GDGCHC | 2 cut(s) | 429, 563 |
| MluCI | AATT | 3 cut(s) | 212, 293, 390 |
| MnlI | CCTC | 5 cut(s) | 49, 156, 237, 349, 458 |
| Mph1103I | ATGCAT | 1 cut(s) | 364 |
| MseI | TTAA | 1 cut(s) | 369 |
| MspI | CCGG | 1 cut(s) | 283 |
| MspR9I | CCNGG | 2 cut(s) | 174, 283 |
| MssI | GTTTAAAC | 1 cut(s) | 370 |
| MunI | CAATTG | 1 cut(s) | 390 |
| MvaI | CCWGG | 1 cut(s) | 174 |
| NciI | CCSGG | 1 cut(s) | 283 |
| NdeII | GATC | 1 cut(s) | 405 |
| NlaIII | CATG | 2 cut(s) | 212, 473 |
| NsiI | ATGCAT | 1 cut(s) | 364 |
| PaeR7I | CTCGAG | 1 cut(s) | 53 |
| PagI | TCATGA | 2 cut(s) | 208, 469 |
| PfeI | GAWTC | 2 cut(s) | 64, 104 |
| PkrI | GCNGC | 2 cut(s) | 138, 288 |
| PmeI | GTTTAAAC | 1 cut(s) | 370 |
| Psp6I | CCWGG | 1 cut(s) | 172 |
| PspFI | CCCAGC | 1 cut(s) | 268 |
| PspGI | CCWGG | 1 cut(s) | 172 |
| PspXI | VCTCGAGB | 1 cut(s) | 53 |
| PstNI | CAGNNNCTG | 1 cut(s) | 456 |
| SaqAI | TTAA | 1 cut(s) | 369 |
| SatI | GCNGC | 2 cut(s) | 137, 287 |
| Sau3AI | GATC | 1 cut(s) | 405 |
| ScrFI | CCNGG | 2 cut(s) | 174, 283 |
| SduI | GDGCHC | 2 cut(s) | 429, 563 |
| SetI | ASST | 8 cut(s) | 30, 114, 160, 171, 248, 304, 450, 536 |
| SfaNI | GCATC | 3 cut(s) | 41, 255, 349 |
| Sfr274I | CTCGAG | 1 cut(s) | 53 |
| SlaI | CTCGAG | 1 cut(s) | 53 |
| SmlI | CTYRAG | 1 cut(s) | 53 |
| SmoI | CTYRAG | 1 cut(s) | 53 |
| Sse9I | AATT | 3 cut(s) | 212, 293, 390 |
| SsiI | CCGC | 3 cut(s) | 101, 136, 286 |
| StyD4I | CCNGG | 2 cut(s) | 172, 281 |
| TaaI | ACNGT | 1 cut(s) | 71 |
| TaqI | TCGA | 5 cut(s) | 35, 54, 258, 333, 501 |
| TasI | AATT | 3 cut(s) | 212, 293, 390 |
| TauI | GCSGC | 2 cut(s) | 139, 289 |
| TfiI | GAWTC | 2 cut(s) | 64, 104 |
| Tru1I | TTAA | 1 cut(s) | 369 |
| Tru9I | TTAA | 1 cut(s) | 369 |
| TspDTI | ATGAA | 4 cut(s) | 161, 197, 225, 267 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 548 |
| XhoI | CTCGAG | 1 cut(s) | 53 |
| Zsp2I | ATGCAT | 1 cut(s) | 364 |