Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006138

Physical Location & Seq

Genomic Coordinates Forward (+)

16168949 .. 16171317

Gene Structure 2369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G40405.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1839 bp

ATGAGTAGAATCGGGAAACATCCGGCTATCGCTCTGTTGGATTCCGGCATTACGTTTAAAGAAGTCCGGCAAATCCATGCCAAACTCTATGTCGACGGGACACTCAAGGATGACCATCTCGTGGGTCACTTTGTAAAGGCAGTGGCTTTGAGTGACCACAAGTACTTAGATTATGCGAATCAGATTCTTGATAGGTCTGAAAAGCCTACATTGTTTGCTCTCAATTCTATGATTAGAGCACATTGCAAGAGCCCTGTTCCAGAAAAAAGCTTTGATTTTTATAGGAGGATACTCTCTTCGGGAAATGATCTTAAACCGGATAATTACACTGTCAACTTCTTGGTTCAGGCGTGTACGGGGTTAAGGATGCGTGAGACAGGGCTTCAAGTTCATGGTATGACTATCAGACGTGGTTTTGACAATGACCCGCATGTCCAGACTGGGTTGATTTCTTTGTATGCGGAGCTTGGCTGTCTGGATTCTTGTCATAAGGTTTTTAATTCTATTCCGTGCCCGGATTTTGTGTGTCGGACAGCGATGGTCACTGCCTGTGCGAGATGTGGGGATGTCGTTTTTGCGCGGAAGTTGTTTGAGGGGATGCCGGAAAGAGACCCGATTGCCTGGAACGCGATGATCTCTGGCTATGCTCAGGTTGGTGAGTCAAGAGAAGCTCTAAACGTGTTTCACTTGATGCAGTTGGAAGGTGTGAAAGTCAATGGGGTTGCTATGATTTCTGTTTTATCGGCTTGCACTCAATTGGGTGCTTTAGACCAAGGGAGATGGGCTCATTCTTACATAGAGAGAAACAAAATCAAAATCACTGTGAGGCTTGCTACTACGTTGGTCGACTTGTATGCAAAATGTGGTGACATGGAAAAGGCTATGGAAGTTTTCTGGGGTATGGAAGAGAAGAATGTGTATACATGGAGTAGCGCCCTGAATGGGTTAGCCATGAATGGGTTCGGGGAGAAATGTCTCGAGCTTTTCTCTCTTATGAAACAAGATGGTGTTACTCCAAACGCTGTCACATTCGTCTCTGTTCTCAGAGGTTGTAGTGTGGTTGGTTTTGTAGATGAAGGGCAAAGACATTTTGATTCGATGAGGAATGAGTTCGGGATAGAACCTCAGCTCGAGCACTATGGCTGCTTGGTTGATTTGTATGCTCGTGCAGGCCGCTTAGAAGACGCAGTAAGTATCATCCAGCAAATGCCCATGAAGCCTCATGCTGCTGTTTGGAGTTCTCTGCTCCACGCATCCAGAATGTACAAGAACCTTGAGCTTGGCGTGCTTGCATCTAAAAAAATGCTCGAGCTAGAGACCGCAAATCACGGAGCTTATGTCCTCTTATCAAACATATATGCAGATTCAAACGATTGGGACAATGTTAGTCACGTTAGACAGTCAATGAAATCTAAAGGAGTCAGAAAGCAACCAGGGTGCAGTGTAATGGAGGTCAATGGAGAAGTCCATGAATTCTTTGTAGGAGACAAATCTCACCCAAAGTATACACAAATCGACGCGGTTTGGAAGGATATCTCGAGAAGGCTGAGACTCGCTGGTTATAAGGCGGACACAACCCCGGTTATGTTCGATATAGATGAAGAAGAGAAAGAGGATGCATTGTGTTTGCATAGCGAAAAGGCAGCGATTGCATTTGGTATAATGAGTTTGAAAGAAGATGTTCCGATTCGGATCGTGAAGAACCTTCGGGTTTGTGGAGATTGTCATCAGGTTTCTATGATGATCTCCAAGATTTTTAACAGAGAGATCATTGTCAGAGACAGAAACAGGTTCCACCATTTCAAAGATGGTCACTGTTCTTGTAATGGCTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

612

Amino Acids

68.87

Weight (kDa)

7.09

Isoelectric Point (pI)

36.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	182 - 298	1.9e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	204 - 250	5.6e-07	PPR repeat family
PPR	PF01535	207 - 236	3.3e-07	PPR repeat
PPR_2	PF13041	304 - 351	4.4e-09	PPR repeat family
E_motif	PF20431	422 - 484	7e-21	E motif
Eplus_motif	PF20430	489 - 516	5e-08	E+ motif
DYW_deaminase	PF14432	520 - 612	5e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40405 AT5G40405
fragaria_vesca	FvH4_4g32050
malus_domestica	MD13G1079400.v1.1 MD16G1079200.v1.1 MD16G1079300.v1.1
prunus_persica	Prupe.1G267400_v2.0.a1
pyrus_communis	pycom13g06910 pycom16g06850
rosa_chinensis	RchiOBHm_Chr1g0381771 RchiOBHm_Chr4g0440691 RchiOBHm_Chr4g0440711
rosa_laevigata	RLG00000006158 RLG00000008805 RLG00000026207
rosa_multiflora	Rmu_sc0000463.1_g000002 Rmu_sc0008418.1_g000010
rosa_roxburghii	Rroxscaffold_5G00381500 Rroxscaffold_7G00185760
rosa_rugosa	Rorug01G0430800 Rorug04G0327600
rosa_samantha	Rh1BG411600 Rh4AG379300 Rh4BG131000 Rh4BG392100
rosa_wichuraiana	Rw1G039640 Rw4G011000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1563
AasI	GACNNNNNNGTC	1 cut(s)	431
AccB7I	CCANNNNNTGG	1 cut(s)	121
AccI	GTMKAC	4 cut(s)	93, 846, 920, 1505
AccII	CGCG	3 cut(s)	580, 629, 1520
AciI	CCGC	7 cut(s)	428, 461, 580, 1174, 1320, 1520, 1568
AclWI	GGATC	1 cut(s)	1700
AcsI	RAATTY	1 cut(s)	1472
AfaI	GTAC	3 cut(s)	164, 355, 1265
AfiI	CCNNNNNNNGG	3 cut(s)	121, 942, 957
AflIII	ACRYGT	1 cut(s)	678
AgsI	TTSAA	4 cut(s)	386, 1368, 1672, 1804
AjiI	CACGTC	1 cut(s)	410
AjnI	CCWGG	2 cut(s)	620, 1432
AluBI	AGCT	8 cut(s)	270, 466, 671, 982, 1129, 1279, 1312, 1334
AluI	AGCT	8 cut(s)	270, 466, 671, 982, 1129, 1279, 1312, 1334
Alw21I	GWGCWC	2 cut(s)	241, 1137
Alw26I	GTCTC	8 cut(s)	368, 603, 980, 1039, 1310, 1479, 1543, 1773
AlwI	GGATC	1 cut(s)	1700
Ama87I	CYCGRG	4 cut(s)	977, 1130, 1307, 1537
AoxI	GGCC	1 cut(s)	1171
ApeKI	GCWGC	3 cut(s)	1143, 1226, 1643
ApoI	RAATTY	1 cut(s)	1472
ArsI	GACNNNNNNTTYG	2 cut(s)	75, 107
Asp700I	GAANNNNTTC	3 cut(s)	959, 1109, 1680
AspLEI	GCGC	2 cut(s)	580, 935
AsuC2I	CCSGG	2 cut(s)	515, 1580
AsuHPI	GGTGA	3 cut(s)	668, 878, 1487
AvaI	CYCGRG	4 cut(s)	977, 1130, 1307, 1537
BaeGI	GKGCMC	1 cut(s)	515
BanII	GRGCYC	2 cut(s)	254, 787
BauI	CACGAG	2 cut(s)	119, 1164
BbsI	GAAGAC	1 cut(s)	1188
Bbv12I	GWGCWC	2 cut(s)	241, 1137
BbvCI	CCTCAGC	1 cut(s)	1125
BbvI	GCAGC	3 cut(s)	1130, 1213, 1655
BccI	CCATC	5 cut(s)	123, 532, 774, 998, 1802
BcgI	CGANNNNNNTGC	2 cut(s)	836, 870
BciT130I	CCWGG	2 cut(s)	622, 1434
BciVI	GTATCC	1 cut(s)	282
BcnI	CCSGG	2 cut(s)	515, 1580
BcoDI	GTCTC	8 cut(s)	368, 603, 980, 1039, 1310, 1479, 1543, 1773
BfaI	CTAG	1 cut(s)	1313
BfoI	RGCGCY	1 cut(s)	936
BfuI	GTATCC	1 cut(s)	282
BisI	GCNGC	4 cut(s)	1144, 1174, 1227, 1644
BlsI	GCNGC	4 cut(s)	1145, 1175, 1228, 1645
BmcAI	AGTACT	1 cut(s)	164
Bme1390I	CCNGG	4 cut(s)	515, 622, 1434, 1580
BmeT110I	CYCGRG	4 cut(s)	977, 1130, 1307, 1537
BmgBI	CACGTC	1 cut(s)	410
BmiI	GGNNCC	1 cut(s)	1793
BmrFI	CCNGG	4 cut(s)	515, 622, 1434, 1580
BmrI	ACTGGG	1 cut(s)	450
BmsI	GCATC	6 cut(s)	357, 588, 681, 1262, 1301, 1606
BmuI	ACTGGG	1 cut(s)	450
BpiI	GAAGAC	1 cut(s)	1188
BplI	GAGNNNNNCTC	4 cut(s)	769, 801, 971, 1003
Bpu10I	CCTNAGC	2 cut(s)	648, 1125
BpuEI	CTTGAG	2 cut(s)	89, 1295
BpuMI	CCSGG	2 cut(s)	515, 1580
BsaBI	GATNNNNATC	3 cut(s)	114, 1691, 1725
BsaI	GGTCTC	2 cut(s)	603, 1310
BsaJI	CCNNGG	3 cut(s)	772, 1433, 1578
BsaWI	WCCGGW	1 cut(s)	316
BsaXI	ACNNNNNCTCC	2 cut(s)	1323, 1353
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 942, 957
Bse1I	ACTGG	1 cut(s)	445
Bse3DI	GCAATG	1 cut(s)	241
Bse8I	GATNNNNATC	3 cut(s)	114, 1691, 1725
BseBI	CCWGG	2 cut(s)	622, 1434
BseDI	CCNNGG	3 cut(s)	772, 1433, 1578
BseGI	GGATG	8 cut(s)	19, 115, 372, 571, 603, 1197, 1253, 1621
BseJI	GATNNNNATC	3 cut(s)	114, 1691, 1725
BseLI	CCNNNNNNNGG	3 cut(s)	121, 942, 957
BseMI	GCAATG	1 cut(s)	241
BseMII	CTCAG	4 cut(s)	662, 1057, 1139, 1538
BseNI	ACTGG	1 cut(s)	445
BseSI	GKGCMC	1 cut(s)	515
BseXI	GCAGC	3 cut(s)	1130, 1213, 1655
BsgI	GTGCAG	2 cut(s)	1188, 1459
Bsh1236I	CGCG	3 cut(s)	580, 629, 1520
BshFI	GGCC	1 cut(s)	1173
BsiHKAI	GWGCWC	2 cut(s)	241, 1137
BsiHKCI	CYCGRG	4 cut(s)	977, 1130, 1307, 1537
BsiSI	CCGG	7 cut(s)	23, 45, 67, 317, 515, 602, 1580
BslFI	GGGAC	2 cut(s)	112, 1391
BslI	CCNNNNNNNGG	3 cut(s)	121, 942, 957
BsmAI	GTCTC	8 cut(s)	368, 603, 980, 1039, 1310, 1479, 1543, 1773
BsmBI	CGTCTC	1 cut(s)	1039
BsmFI	GGGAC	2 cut(s)	112, 1391
BsnI	GGCC	1 cut(s)	1173
Bso31I	GGTCTC	2 cut(s)	603, 1310
BsoBI	CYCGRG	4 cut(s)	977, 1130, 1307, 1537
Bsp1286I	GDGCHC	5 cut(s)	241, 254, 515, 787, 1137
Bsp1407I	TGTACA	1 cut(s)	1263
Bsp143I	GATC	5 cut(s)	307, 633, 1692, 1743, 1767
BspACI	CCGC	7 cut(s)	428, 461, 580, 1174, 1320, 1520, 1568
BspANI	GGCC	1 cut(s)	1173
BspCNI	CTCAG	4 cut(s)	661, 1056, 1138, 1539
BspFNI	CGCG	3 cut(s)	580, 629, 1520
BspLI	GGNNCC	1 cut(s)	1793
BspPI	GGATC	1 cut(s)	1700
BspTNI	GGTCTC	2 cut(s)	603, 1310
BsrDI	GCAATG	1 cut(s)	241
BsrGI	TGTACA	1 cut(s)	1263
BsrI	ACTGG	1 cut(s)	445
BssECI	CCNNGG	3 cut(s)	772, 1433, 1578
BssMI	GATC	5 cut(s)	307, 633, 1692, 1743, 1767
BssNAI	GTATAC	2 cut(s)	921, 1506
BssSI	CACGAG	2 cut(s)	119, 1164
BssT1I	CCWWGG	1 cut(s)	772
Bst1107I	GTATAC	2 cut(s)	921, 1506
Bst2BI	CACGAG	2 cut(s)	119, 1164
Bst2UI	CCWGG	2 cut(s)	622, 1434
Bst4CI	ACNGT	4 cut(s)	331, 823, 1401, 1817
Bst6I	CTCTTC	3 cut(s)	301, 900, 1599
BstAPI	GCANNNNNTGC	1 cut(s)	1649
BstAUI	TGTACA	1 cut(s)	1263
BstC8I	GCNNGC	5 cut(s)	748, 831, 1171, 1286, 1290
BstDEI	CTNAG	6 cut(s)	166, 648, 1043, 1125, 1177, 1547
BstF5I	GGATG	8 cut(s)	19, 115, 372, 571, 603, 1197, 1253, 1621
BstFNI	CGCG	3 cut(s)	580, 629, 1520
BstH2I	RGCGCY	1 cut(s)	936
BstHHI	GCGC	2 cut(s)	580, 935
BstKTI	GATC	5 cut(s)	310, 636, 1695, 1746, 1770
BstMAI	GTCTC	8 cut(s)	368, 603, 980, 1039, 1310, 1479, 1543, 1773
BstMBI	GATC	5 cut(s)	307, 633, 1692, 1743, 1767
BstMWI	GCNNNNNNNGC	4 cut(s)	626, 1216, 1285, 1649
BstNI	CCWGG	2 cut(s)	622, 1434
BstNSI	RCATGY	1 cut(s)	434
BstSCI	CCNGG	4 cut(s)	513, 620, 1432, 1578
BstSLI	GKGCMC	1 cut(s)	515
BstUI	CGCG	3 cut(s)	580, 629, 1520
BstV1I	GCAGC	3 cut(s)	1130, 1213, 1655
BstV2I	GAAGAC	1 cut(s)	1188
BstZ17I	GTATAC	2 cut(s)	921, 1506
BsuI	GTATCC	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	1173
BtgZI	GCGATG	2 cut(s)	551, 644
BtrI	CACGTC	1 cut(s)	410
BtsCI	GGATG	8 cut(s)	19, 115, 372, 571, 603, 1197, 1253, 1621
BtsI	GCAGTG	3 cut(s)	147, 543, 1447
BtsIMutI	CAGTG	6 cut(s)	147, 327, 543, 819, 1447, 1813
Cac8I	GCNNGC	5 cut(s)	748, 831, 1171, 1286, 1290
CfoI	GCGC	2 cut(s)	580, 935
CseI	GACGC	2 cut(s)	1193, 1526
Csp6I	GTAC	3 cut(s)	163, 354, 1264
CviAII	CATG	9 cut(s)	77, 392, 431, 871, 924, 952, 1213, 1223, 1469
CviQI	GTAC	3 cut(s)	163, 354, 1264
DdeI	CTNAG	6 cut(s)	166, 648, 1043, 1125, 1177, 1547
DpnI	GATC	5 cut(s)	309, 635, 1694, 1745, 1769
DpnII	GATC	5 cut(s)	307, 633, 1692, 1743, 1767
DraI	TTTAAA	1 cut(s)	58
DrdI	GACNNNNNNGTC	1 cut(s)	431
DseDI	GACNNNNNNGTC	1 cut(s)	431
Eam1104I	CTCTTC	3 cut(s)	301, 900, 1599
EarI	CTCTTC	3 cut(s)	301, 900, 1599
EciI	GGCGGA	1 cut(s)	1583
Eco130I	CCWWGG	1 cut(s)	772
Eco24I	GRGCYC	2 cut(s)	254, 787
Eco31I	GGTCTC	2 cut(s)	603, 1310
Eco32I	GATATC	1 cut(s)	1534
Eco88I	CYCGRG	4 cut(s)	977, 1130, 1307, 1537
EcoRI	GAATTC	1 cut(s)	1472
EcoRII	CCWGG	2 cut(s)	620, 1432
EcoRV	GATATC	1 cut(s)	1534
EcoT14I	CCWWGG	1 cut(s)	772
EcoT22I	ATGCAT	1 cut(s)	1621
EcoT38I	GRGCYC	2 cut(s)	254, 787
ErhI	CCWWGG	1 cut(s)	772
Esp3I	CGTCTC	1 cut(s)	1039
FaeI	CATG	9 cut(s)	80, 395, 434, 874, 927, 955, 1216, 1226, 1472
FaqI	GGGAC	2 cut(s)	112, 1391
FatI	CATG	9 cut(s)	76, 391, 430, 870, 923, 951, 1212, 1222, 1468
FauI	CCCGC	1 cut(s)	435
FblI	GTMKAC	4 cut(s)	93, 846, 920, 1505
Fnu4HI	GCNGC	4 cut(s)	1144, 1174, 1227, 1644
FokI	GGATG	8 cut(s)	6, 122, 379, 578, 610, 1184, 1240, 1628
FriOI	GRGCYC	2 cut(s)	254, 787
Fsp4HI	GCNGC	4 cut(s)	1144, 1174, 1227, 1644
FspBI	CTAG	1 cut(s)	1313
GlaI	GCGC	2 cut(s)	579, 934
GluI	GCNGC	4 cut(s)	1144, 1174, 1227, 1644
HaeII	RGCGCY	1 cut(s)	936
HaeIII	GGCC	1 cut(s)	1173
HapII	CCGG	7 cut(s)	23, 45, 67, 317, 515, 602, 1580
HgaI	GACGC	2 cut(s)	1193, 1526
HhaI	GCGC	2 cut(s)	580, 935
Hin1II	CATG	9 cut(s)	80, 395, 434, 874, 927, 955, 1216, 1226, 1472
Hin6I	GCGC	2 cut(s)	578, 933
HinP1I	GCGC	2 cut(s)	578, 933
HincII	GTYRAC	3 cut(s)	94, 334, 847
HindII	GTYRAC	3 cut(s)	94, 334, 847
HindIII	AAGCTT	1 cut(s)	268
HpaII	CCGG	7 cut(s)	23, 45, 67, 317, 515, 602, 1580
HphI	GGTGA	3 cut(s)	668, 878, 1487
Hpy166II	GTNNAC	6 cut(s)	94, 334, 354, 847, 921, 1506
Hpy188I	TCNGA	9 cut(s)	183, 199, 407, 531, 1046, 1424, 1686, 1692, 1778
Hpy8I	GTNNAC	6 cut(s)	94, 334, 354, 847, 921, 1506
Hpy99I	CGWCG	2 cut(s)	98, 1520
HpyAV	CCTTC	5 cut(s)	695, 1070, 1522, 1536, 1715
HpyCH4III	ACNGT	4 cut(s)	331, 823, 1401, 1817
HpyCH4IV	ACGT	5 cut(s)	53, 409, 678, 839, 1392
HpyF10VI	GCNNNNNNNGC	4 cut(s)	626, 1216, 1285, 1649
HpyF3I	CTNAG	6 cut(s)	166, 648, 1043, 1125, 1177, 1547
HpySE526I	ACGT	5 cut(s)	53, 409, 678, 839, 1392
Hsp92II	CATG	9 cut(s)	80, 395, 434, 874, 927, 955, 1216, 1226, 1472
HspAI	GCGC	2 cut(s)	578, 933
Kzo9I	GATC	5 cut(s)	307, 633, 1692, 1743, 1767
LmnI	GCTCC	3 cut(s)	463, 1251, 1331
Lsp1109I	GCAGC	3 cut(s)	1130, 1213, 1655
LweI	GCATC	6 cut(s)	357, 588, 681, 1262, 1301, 1606
MaeI	CTAG	1 cut(s)	1313
MaeII	ACGT	5 cut(s)	53, 409, 678, 839, 1392
MaeIII	GTNAC	8 cut(s)	125, 152, 541, 866, 1009, 1024, 1388, 1811
MalI	GATC	5 cut(s)	309, 635, 1694, 1745, 1769
MboI	GATC	5 cut(s)	307, 633, 1692, 1743, 1767
MboII	GAAGA	8 cut(s)	288, 917, 922, 1193, 1613, 1616, 1688, 1711
MfeI	CAATTG	1 cut(s)	755
MhlI	GDGCHC	5 cut(s)	241, 254, 515, 787, 1137
MluCI	AATT	5 cut(s)	223, 322, 499, 755, 1472
MlyI	GAGTC	3 cut(s)	668, 1428, 1545
MmeI	TCCRAC	3 cut(s)	18, 509, 678
Mph1103I	ATGCAT	1 cut(s)	1621
MroXI	GAANNNNTTC	3 cut(s)	959, 1109, 1680
MseI	TTAA	5 cut(s)	57, 312, 362, 498, 1758
MspI	CCGG	7 cut(s)	23, 45, 67, 317, 515, 602, 1580
MspR9I	CCNGG	4 cut(s)	515, 622, 1434, 1580
MunI	CAATTG	1 cut(s)	755
MvaI	CCWGG	2 cut(s)	622, 1434
MvnI	CGCG	3 cut(s)	580, 629, 1520
MwoI	GCNNNNNNNGC	4 cut(s)	626, 1216, 1285, 1649
NciI	CCSGG	2 cut(s)	515, 1580
NdeII	GATC	5 cut(s)	307, 633, 1692, 1743, 1767
NlaIII	CATG	9 cut(s)	80, 395, 434, 874, 927, 955, 1216, 1226, 1472
NlaIV	GGNNCC	1 cut(s)	1793
NmuCI	GTSAC	7 cut(s)	125, 152, 541, 866, 1024, 1388, 1811
NsiI	ATGCAT	1 cut(s)	1621
NspI	RCATGY	1 cut(s)	434
PaeR7I	CTCGAG	4 cut(s)	977, 1130, 1307, 1537
PdmI	GAANNNNTTC	3 cut(s)	959, 1109, 1680
PfeI	GAWTC	8 cut(s)	9, 41, 178, 184, 479, 1094, 1364, 1687
PflMI	CCANNNNNTGG	1 cut(s)	121
PkrI	GCNGC	4 cut(s)	1145, 1175, 1228, 1645
PleI	GAGTC	3 cut(s)	667, 1427, 1545
PpsI	GAGTC	3 cut(s)	667, 1427, 1545
PsiI	TTATAA	1 cut(s)	1563
Psp6I	CCWGG	2 cut(s)	620, 1432
PspGI	CCWGG	2 cut(s)	620, 1432
PspN4I	GGNNCC	1 cut(s)	1793
PspXI	VCTCGAGB	2 cut(s)	1130, 1307
RsaI	GTAC	3 cut(s)	164, 355, 1265
RsaNI	GTAC	3 cut(s)	163, 354, 1264
SalI	GTCGAC	2 cut(s)	92, 845
SaqAI	TTAA	5 cut(s)	57, 312, 362, 498, 1758
SatI	GCNGC	4 cut(s)	1144, 1174, 1227, 1644
Sau3AI	GATC	5 cut(s)	307, 633, 1692, 1743, 1767
ScaI	AGTACT	1 cut(s)	164
SchI	GAGTC	3 cut(s)	668, 1428, 1545
ScrFI	CCNGG	4 cut(s)	515, 622, 1434, 1580
SduI	GDGCHC	5 cut(s)	241, 254, 515, 787, 1137
SfaNI	GCATC	6 cut(s)	357, 588, 681, 1262, 1301, 1606
Sfr274I	CTCGAG	4 cut(s)	977, 1130, 1307, 1537
SlaI	CTCGAG	4 cut(s)	977, 1130, 1307, 1537
SmlI	CTYRAG	6 cut(s)	104, 977, 1130, 1274, 1307, 1537
SmoI	CTYRAG	6 cut(s)	104, 977, 1130, 1274, 1307, 1537
Sse9I	AATT	5 cut(s)	223, 322, 499, 755, 1472
SsiI	CCGC	7 cut(s)	428, 461, 580, 1174, 1320, 1520, 1568
SspMI	CTAG	1 cut(s)	1313
StyD4I	CCNGG	4 cut(s)	513, 620, 1432, 1578
StyI	CCWWGG	1 cut(s)	772
TaaI	ACNGT	4 cut(s)	331, 823, 1401, 1817
TaiI	ACGT	5 cut(s)	56, 412, 681, 842, 1395
TaqI	TCGA	9 cut(s)	93, 846, 978, 1097, 1131, 1308, 1515, 1538, 1590
TasI	AATT	5 cut(s)	223, 322, 499, 755, 1472
TatI	WGTACW	2 cut(s)	162, 1263
TauI	GCSGC	1 cut(s)	1176
TfiI	GAWTC	8 cut(s)	9, 41, 178, 184, 479, 1094, 1364, 1687
Tru1I	TTAA	5 cut(s)	57, 312, 362, 498, 1758
Tru9I	TTAA	5 cut(s)	57, 312, 362, 498, 1758
TscAI	CASTG	6 cut(s)	147, 334, 550, 826, 1447, 1820
TseFI	GTSAC	7 cut(s)	125, 152, 541, 866, 1024, 1388, 1811
TseI	GCWGC	3 cut(s)	1143, 1226, 1643
Tsp45I	GTSAC	7 cut(s)	125, 152, 541, 866, 1024, 1388, 1811
TspDTI	ATGAA	8 cut(s)	380, 968, 1010, 1089, 1229, 1421, 1485, 1614
TspGWI	ACGGA	2 cut(s)	498, 1344
TspRI	CASTG	6 cut(s)	147, 334, 550, 826, 1447, 1820
Van91I	CCANNNNNTGG	1 cut(s)	121
XapI	RAATTY	1 cut(s)	1472
XceI	RCATGY	1 cut(s)	434
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1805
XhoI	CTCGAG	4 cut(s)	977, 1130, 1307, 1537
XmiI	GTMKAC	4 cut(s)	93, 846, 920, 1505
XmnI	GAANNNNTTC	3 cut(s)	959, 1109, 1680
XspI	CTAG	1 cut(s)	1313
ZrmI	AGTACT	1 cut(s)	164
Zsp2I	ATGCAT	1 cut(s)	1621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.