Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G40405 AT5G40405 |
| fragaria_vesca | FvH4_4g32050 |
| malus_domestica | MD13G1079400.v1.1 MD16G1079200.v1.1 MD16G1079300.v1.1 |
| prunus_persica | Prupe.1G267400_v2.0.a1 |
| pyrus_communis | pycom13g06910 pycom16g06850 |
| rosa_chinensis | RchiOBHm_Chr1g0381771 RchiOBHm_Chr4g0440691 RchiOBHm_Chr4g0440711 |
| rosa_laevigata | RLG00000006158 RLG00000008805 RLG00000026207 |
| rosa_multiflora | Rmu_sc0000463.1_g000002 Rmu_sc0008418.1_g000010 |
| rosa_roxburghii | Rroxscaffold_5G00381500 Rroxscaffold_7G00185760 |
| rosa_rugosa | Rorug01G0430800 Rorug04G0327600 |
| rosa_samantha | Rh1BG411600 Rh4AG379300 Rh4BG131000 Rh4BG392100 |
| rosa_wichuraiana | Rw1G039640 Rw4G011000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 194, 358 |
| AciI | CCGC | 2 cut(s) | 500, 635 |
| AclWI | GGATC | 1 cut(s) | 51 |
| AcoI | YGGCCR | 1 cut(s) | 436 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 500 |
| AflIII | ACRYGT | 1 cut(s) | 123 |
| AgsI | TTSAA | 1 cut(s) | 395 |
| AhlI | ACTAGT | 1 cut(s) | 340 |
| AluBI | AGCT | 5 cut(s) | 224, 256, 443, 562, 646 |
| AluI | AGCT | 5 cut(s) | 224, 256, 443, 562, 646 |
| AlwI | GGATC | 1 cut(s) | 51 |
| Ama87I | CYCGRG | 1 cut(s) | 587 |
| AoxI | GGCC | 2 cut(s) | 153, 436 |
| AsuHPI | GGTGA | 3 cut(s) | 97, 251, 569 |
| AvaI | CYCGRG | 1 cut(s) | 587 |
| BanII | GRGCYC | 1 cut(s) | 61 |
| BccI | CCATC | 2 cut(s) | 48, 647 |
| BcuI | ACTAGT | 1 cut(s) | 340 |
| BfaI | CTAG | 4 cut(s) | 221, 341, 528, 670 |
| BmeT110I | CYCGRG | 1 cut(s) | 587 |
| BmrI | ACTGGG | 1 cut(s) | 563 |
| BmsI | GCATC | 1 cut(s) | 448 |
| BmuI | ACTGGG | 1 cut(s) | 563 |
| BoxI | GACNNNNGTC | 1 cut(s) | 246 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 43, 75, 245, 277 |
| BpuEI | CTTGAG | 1 cut(s) | 272 |
| BsaAI | YACGTR | 1 cut(s) | 198 |
| BsaJI | CCNNGG | 1 cut(s) | 210 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 500 |
| Bse1I | ACTGG | 1 cut(s) | 558 |
| BseDI | CCNNGG | 1 cut(s) | 210 |
| BseGI | GGATG | 2 cut(s) | 96, 180 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 500 |
| BseMII | CTCAG | 1 cut(s) | 276 |
| BseNI | ACTGG | 1 cut(s) | 558 |
| BseYI | CCCAGC | 1 cut(s) | 443 |
| BsgI | GTGCAG | 1 cut(s) | 96 |
| BshFI | GGCC | 2 cut(s) | 155, 438 |
| BsiHKCI | CYCGRG | 1 cut(s) | 587 |
| BslFI | GGGAC | 2 cut(s) | 121, 231 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 500 |
| BsmFI | GGGAC | 2 cut(s) | 121, 231 |
| BsnI | GGCC | 2 cut(s) | 155, 438 |
| BsoBI | CYCGRG | 1 cut(s) | 587 |
| Bsp1286I | GDGCHC | 1 cut(s) | 61 |
| Bsp143I | GATC | 1 cut(s) | 43 |
| BspACI | CCGC | 2 cut(s) | 500, 635 |
| BspANI | GGCC | 2 cut(s) | 155, 438 |
| BspCNI | CTCAG | 1 cut(s) | 275 |
| BspPI | GGATC | 1 cut(s) | 51 |
| BsrI | ACTGG | 1 cut(s) | 558 |
| BssECI | CCNNGG | 1 cut(s) | 210 |
| BssMI | GATC | 1 cut(s) | 43 |
| BssNAI | GTATAC | 1 cut(s) | 195 |
| BssT1I | CCWWGG | 1 cut(s) | 210 |
| Bst1107I | GTATAC | 1 cut(s) | 195 |
| Bst4CI | ACNGT | 3 cut(s) | 97, 331, 605 |
| BstBAI | YACGTR | 1 cut(s) | 198 |
| BstC8I | GCNNGC | 1 cut(s) | 564 |
| BstDEI | CTNAG | 2 cut(s) | 262, 317 |
| BstF5I | GGATG | 2 cut(s) | 96, 180 |
| BstKTI | GATC | 1 cut(s) | 46 |
| BstMBI | GATC | 1 cut(s) | 43 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 490, 512 |
| BstNSI | RCATGY | 2 cut(s) | 127, 484 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 246 |
| BstZ17I | GTATAC | 1 cut(s) | 195 |
| BsuRI | GGCC | 2 cut(s) | 155, 438 |
| BtsCI | GGATG | 2 cut(s) | 96, 180 |
| BtsIMutI | CAGTG | 1 cut(s) | 102 |
| Cac8I | GCNNGC | 1 cut(s) | 564 |
| CseI | GACGC | 1 cut(s) | 555 |
| CviAII | CATG | 7 cut(s) | 62, 124, 145, 157, 268, 481, 497 |
| DdeI | CTNAG | 2 cut(s) | 262, 317 |
| DpnI | GATC | 1 cut(s) | 45 |
| DpnII | GATC | 1 cut(s) | 43 |
| EaeI | YGGCCR | 1 cut(s) | 436 |
| Eco130I | CCWWGG | 1 cut(s) | 210 |
| Eco24I | GRGCYC | 1 cut(s) | 61 |
| Eco88I | CYCGRG | 1 cut(s) | 587 |
| EcoT14I | CCWWGG | 1 cut(s) | 210 |
| EcoT22I | ATGCAT | 1 cut(s) | 67 |
| EcoT38I | GRGCYC | 1 cut(s) | 61 |
| ErhI | CCWWGG | 1 cut(s) | 210 |
| FaeI | CATG | 7 cut(s) | 65, 127, 148, 160, 271, 484, 500 |
| FaqI | GGGAC | 2 cut(s) | 121, 231 |
| FatI | CATG | 7 cut(s) | 61, 123, 144, 156, 267, 480, 496 |
| FauI | CCCGC | 1 cut(s) | 493 |
| FblI | GTMKAC | 2 cut(s) | 194, 358 |
| FokI | GGATG | 2 cut(s) | 103, 187 |
| FriOI | GRGCYC | 1 cut(s) | 61 |
| FspBI | CTAG | 4 cut(s) | 221, 341, 528, 670 |
| GsaI | CCCAGC | 1 cut(s) | 447 |
| HaeIII | GGCC | 2 cut(s) | 155, 438 |
| HgaI | GACGC | 1 cut(s) | 555 |
| Hin1II | CATG | 7 cut(s) | 65, 127, 148, 160, 271, 484, 500 |
| HincII | GTYRAC | 1 cut(s) | 359 |
| HindII | GTYRAC | 1 cut(s) | 359 |
| HindIII | AAGCTT | 1 cut(s) | 644 |
| HinfI | GANTC | 3 cut(s) | 368, 598, 638 |
| HphI | GGTGA | 3 cut(s) | 97, 251, 569 |
| Hpy166II | GTNNAC | 2 cut(s) | 195, 359 |
| Hpy188I | TCNGA | 1 cut(s) | 543 |
| Hpy188III | TCNNGA | 2 cut(s) | 251, 570 |
| Hpy8I | GTNNAC | 2 cut(s) | 195, 359 |
| Hpy99I | CGWCG | 2 cut(s) | 360, 571 |
| HpyAV | CCTTC | 2 cut(s) | 172, 344 |
| HpyCH4III | ACNGT | 3 cut(s) | 97, 331, 605 |
| HpyCH4IV | ACGT | 1 cut(s) | 197 |
| HpyCH4V | TGCA | 4 cut(s) | 65, 113, 160, 420 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 490, 512 |
| HpyF3I | CTNAG | 2 cut(s) | 262, 317 |
| HpySE526I | ACGT | 1 cut(s) | 197 |
| Hsp92II | CATG | 7 cut(s) | 65, 127, 148, 160, 271, 484, 500 |
| Kzo9I | GATC | 1 cut(s) | 43 |
| LmnI | GCTCC | 1 cut(s) | 525 |
| LpnPI | CCDG | 4 cut(s) | 429, 476, 539, 580 |
| LweI | GCATC | 1 cut(s) | 448 |
| MaeI | CTAG | 4 cut(s) | 221, 341, 528, 670 |
| MaeII | ACGT | 1 cut(s) | 197 |
| MaeIII | GTNAC | 5 cut(s) | 26, 97, 239, 298, 662 |
| MalI | GATC | 1 cut(s) | 45 |
| MboI | GATC | 1 cut(s) | 43 |
| MhlI | GDGCHC | 1 cut(s) | 61 |
| MluCI | AATT | 2 cut(s) | 380, 409 |
| MlyI | GAGTC | 1 cut(s) | 362 |
| MmeI | TCCRAC | 1 cut(s) | 316 |
| MnlI | CCTC | 4 cut(s) | 81, 340, 504, 583 |
| Mph1103I | ATGCAT | 1 cut(s) | 67 |
| MseI | TTAA | 1 cut(s) | 474 |
| MslI | CAYNNNNRTG | 3 cut(s) | 161, 485, 501 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 490, 512 |
| NdeII | GATC | 1 cut(s) | 43 |
| NlaIII | CATG | 7 cut(s) | 65, 127, 148, 160, 271, 484, 500 |
| NmeAIII | GCCGAG | 1 cut(s) | 464 |
| NmuCI | GTSAC | 4 cut(s) | 26, 97, 239, 662 |
| NsiI | ATGCAT | 1 cut(s) | 67 |
| NspI | RCATGY | 2 cut(s) | 127, 484 |
| PaeR7I | CTCGAG | 1 cut(s) | 587 |
| PciI | ACATGT | 1 cut(s) | 123 |
| PfeI | GAWTC | 2 cut(s) | 598, 638 |
| PleI | GAGTC | 1 cut(s) | 362 |
| PpsI | GAGTC | 1 cut(s) | 362 |
| Ppu21I | YACGTR | 1 cut(s) | 198 |
| PscI | ACATGT | 1 cut(s) | 123 |
| PshAI | GACNNNNGTC | 1 cut(s) | 246 |
| PspFI | CCCAGC | 1 cut(s) | 443 |
| PspXI | VCTCGAGB | 1 cut(s) | 587 |
| RseI | CAYNNNNRTG | 3 cut(s) | 161, 485, 501 |
| SalI | GTCGAC | 1 cut(s) | 357 |
| SaqAI | TTAA | 1 cut(s) | 474 |
| Sau3AI | GATC | 1 cut(s) | 43 |
| SchI | GAGTC | 1 cut(s) | 362 |
| SduI | GDGCHC | 1 cut(s) | 61 |
| SetI | ASST | 9 cut(s) | 87, 200, 226, 258, 305, 355, 445, 564, 648 |
| SfaNI | GCATC | 1 cut(s) | 448 |
| Sfr274I | CTCGAG | 1 cut(s) | 587 |
| SlaI | CTCGAG | 1 cut(s) | 587 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 161, 485, 501 |
| SmlI | CTYRAG | 2 cut(s) | 251, 587 |
| SmoI | CTYRAG | 2 cut(s) | 251, 587 |
| SpeI | ACTAGT | 1 cut(s) | 340 |
| Sse9I | AATT | 2 cut(s) | 380, 409 |
| SsiI | CCGC | 2 cut(s) | 500, 635 |
| SspMI | CTAG | 4 cut(s) | 221, 341, 528, 670 |
| StyI | CCWWGG | 1 cut(s) | 210 |
| TaaI | ACNGT | 3 cut(s) | 97, 331, 605 |
| TaiI | ACGT | 1 cut(s) | 200 |
| TaqI | TCGA | 4 cut(s) | 358, 371, 569, 588 |
| TasI | AATT | 2 cut(s) | 380, 409 |
| TfiI | GAWTC | 2 cut(s) | 598, 638 |
| Tru1I | TTAA | 1 cut(s) | 474 |
| Tru9I | TTAA | 1 cut(s) | 474 |
| TscAI | CASTG | 1 cut(s) | 102 |
| TseFI | GTSAC | 4 cut(s) | 26, 97, 239, 662 |
| Tsp45I | GTSAC | 4 cut(s) | 26, 97, 239, 662 |
| TspDTI | ATGAA | 6 cut(s) | 191, 242, 309, 389, 460, 503 |
| TspRI | CASTG | 1 cut(s) | 102 |
| XceI | RCATGY | 2 cut(s) | 127, 484 |
| XhoI | CTCGAG | 1 cut(s) | 587 |
| XmiI | GTMKAC | 2 cut(s) | 194, 358 |
| XspI | CTAG | 4 cut(s) | 221, 341, 528, 670 |
| Zsp2I | ATGCAT | 1 cut(s) | 67 |