Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008418.1

Orthogroup ID

OG0006138

Physical Location & Seq

Genomic Coordinates Reverse (-)

43487 .. 49966

Gene Structure 6480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008418.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2388 bp

atggattgggtcgggtcgggtatgatccaaaagtcaagtgcttggcccaacataaaagtagagttagcgtcggagttggttatgcagggttgggccaaagacctgaaagaaggaggatcaaacagaatggcctggtttgattttctgcaaaagaatattggcaccatctttctgcaactgttcctttgtctattgctcagtgtcaacttgcttgcttattcttattcagattttaggagcagtttgcaggcagattattcaattgtcttgaattcaggaattattggtttaatggaagctctatgcattgcaaaacacccaacaattgcactagtagactcatccaccactctcaaagatctcaagcaaatccacacccaactcctcattaacggcgttctcaacgatcctcacctctccggcaactttgttgccaccattgctgtccggaaccccaacaatttggaatattccaaccgagtcctggaccaatgtgacaacccatctctctttgccttcaactccatgatcagggcctattccaaaagctccacacccagtaaaagctttcacttttacagcagaatcctccattcatgtaacaatcttctacctgataactacacatttaacttcttggttcgcacttctgcgcagctttcgtcatttgagactggtccttcgatccatggtgcattagtaaagcatggatttgagaatgacccgcatgttcaaagtgctttaatatttatgtatgcggaattgggttgcttggagcaatgtcatagagtgtttagcggcattgccgatcctgatttggtgtgtcagactgctattgtgagcgcttgtgctaaatgtggggatgtagattatgcacggttattgttcgatgaaatgcctgagagagaccccattgcttggaatgcgatgattgcggggtatgcgcaatgtgggaagtctagggaagctttgggtttgttccatttgatgcaaatggagggtgtgagggtgaatgaggtgtgtatggtttcggtgttatcggcttgttgtcacttgggggcactggatcaagggagatgggctcatgcatatatagagagaaacaaggtgaggatgacagtgacattggggactacactgcttgacatgtatgcgaaatgtgggaacatgagtaaggctatggaattgttttgggtgatgaaggaaaagaatgtgtatacgtggagtgttgccttggggggactagctatgaatggctttggtgagaagtgccttgagcttttctcagtcatggagaaagaaggcgttcggccaaatgaagttacctttgtttcggttcttaggggttgtactgtggttggactagtagaggaaggtcgtcgacattttgactcgatgaaagaattgtatgggattgaacctcagctagagcattatgggtgcattgttgacttatatggtcgagctgggcgtttagatgaagccctgaacttcattaacaacatgccaatgaagcctcatgcgggtgcttggggggctttgctccacgctagtagaatgtatcggaatatggaactgggtgagcttgcgtcgagaaagatagtagaactcgaggacaggaatcacggtgcttatgtgcttttgtccaatatatatgcggattccaagctttatgatggagttagtaatgtgcggcaaaatatgaaggctaaaggtgtgaggaagcttcctggttgtagtgtcatagaagttgatggggaagttcatgaattctttgcaggggaagacaattctcatccaaggtataatgaaatcgaaatgatgctggaagaaatctcccggcgcctgaaattagcaggttatgttgccaataccaaccctgtgctgttcgatatagaagaagaagagaaagaggatgcattgtttaaacacagcgagaagtttgccattgcttttggtttgatcggtttgagagaaggagtacccattaggattgtgaagaacctcagggtctgtagggattgtcatgatgtaacaaaaatgatatccaagattttcaatagagtgattatagtaagagatatctcccggcgcctgaaattagcaggttatgttgccaataccaaccctgtgctgttcgatatagaagaagaagagaaagagggtgcattgtttaaacacagcgagaagtttgccattgcttttggtttgatcggtttgagagaaggagtgcccattaggattgcaaagaacctcagggtctgttgggattgtcatgatgtaacaaaaatgatatccaagattttcaatagagtgattatagtaagagacagaaataggtttcaccattttcaaaatggtgagtgctcttgtaaggattattggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

795

Amino Acids

89.65

Weight (kDa)

6.51

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40405 AT5G40405
fragaria_vesca	FvH4_4g32050
malus_domestica	MD13G1079400.v1.1 MD16G1079200.v1.1 MD16G1079300.v1.1
prunus_persica	Prupe.1G267400_v2.0.a1
pyrus_communis	pycom13g06910 pycom16g06850
rosa_chinensis	RchiOBHm_Chr1g0381771 RchiOBHm_Chr4g0440691 RchiOBHm_Chr4g0440711
rosa_laevigata	RLG00000006158 RLG00000008805 RLG00000026207
rosa_multiflora	Rmu_sc0000463.1_g000002 Rmu_sc0008418.1_g000010
rosa_roxburghii	Rroxscaffold_5G00381500 Rroxscaffold_7G00185760
rosa_rugosa	Rorug01G0430800 Rorug04G0327600
rosa_samantha	Rh1BG411600 Rh4AG379300 Rh4BG131000 Rh4BG392100
rosa_wichuraiana	Rw1G039640 Rw4G011000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	654, 945
Acc36I	ACCTGC	2 cut(s)	1847, 2096
AccB1I	GGYRCC	3 cut(s)	161, 1842, 2091
AccB7I	CCANNNNNTGG	1 cut(s)	918
AccI	GTMKAC	3 cut(s)	336, 1217, 1381
AccIII	TCCGGA	1 cut(s)	447
AciI	CCGC	7 cut(s)	725, 758, 798, 935, 1523, 1658, 1693
AclWI	GGATC	6 cut(s)	19, 124, 401, 679, 803, 1074
AcoI	YGGCCR	1 cut(s)	1310
AcsI	RAATTY	2 cut(s)	271, 1769
AcyI	GRCGYC	2 cut(s)	1843, 2092
AfaI	GTAC	2 cut(s)	1351, 1983
AfeI	AGCGCT	1 cut(s)	844
AfiI	CCNNNNNNNGG	4 cut(s)	484, 531, 918, 1523
AflIII	ACRYGT	1 cut(s)	1146
AgsI	TTSAA	8 cut(s)	261, 271, 520, 734, 1418, 2059, 2308, 2354
AhlI	ACTAGT	2 cut(s)	331, 1363
AjnI	CCWGG	3 cut(s)	131, 483, 1729
Alw21I	GWGCWC	1 cut(s)	2369
Alw26I	GTCTC	3 cut(s)	665, 900, 2322
AlwI	GGATC	6 cut(s)	19, 124, 401, 679, 803, 1074
AlwNI	CAGNNNCTG	2 cut(s)	2013, 2262
Ama87I	CYCGRG	1 cut(s)	1610
Aor13HI	TCCGGA	1 cut(s)	447
Aor51HI	AGCGCT	1 cut(s)	844
AoxI	GGCC	5 cut(s)	44, 93, 129, 534, 1310
ApeKI	GCWGC	1 cut(s)	655
ApoI	RAATTY	2 cut(s)	271, 1769
ArsI	GACNNNNNNTTYG	2 cut(s)	664, 696
Asp700I	GAANNNNTTC	1 cut(s)	1305
AspLEI	GCGC	5 cut(s)	655, 845, 946, 1845, 2094
AspS9I	GGNCC	5 cut(s)	45, 93, 487, 534, 677
AsuC2I	CCSGG	2 cut(s)	1840, 2089
AsuHPI	GGTGA	8 cut(s)	404, 1021, 1120, 1207, 1274, 1592, 2336, 2372
AvaI	CYCGRG	1 cut(s)	1610
AvaII	GGWCC	2 cut(s)	487, 677
AxyI	CCTNAGG	2 cut(s)	2006, 2255
BaeGI	GKGCMC	2 cut(s)	1063, 2235
BanI	GGYRCC	3 cut(s)	161, 1842, 2091
BanII	GRGCYC	1 cut(s)	1084
BbsI	GAAGAC	1 cut(s)	1791
Bbv12I	GWGCWC	1 cut(s)	2369
BbvCI	CCTCAGC	1 cut(s)	1422
BbvI	GCAGC	1 cut(s)	667
BccI	CCATC	5 cut(s)	173, 511, 1071, 1670, 1748
BceAI	ACGGC	1 cut(s)	409
BcgI	CGANNNNNNTGC	4 cut(s)	1925, 1959, 2174, 2208
BciT130I	CCWGG	3 cut(s)	133, 485, 1731
BclI	TGATCA	1 cut(s)	528
BcnI	CCSGG	2 cut(s)	1840, 2089
BcoDI	GTCTC	3 cut(s)	665, 900, 2322
BcuI	ACTAGT	2 cut(s)	331, 1363
BfaI	CTAG	6 cut(s)	332, 960, 1244, 1364, 1427, 1551
BfmI	CTRYAG	1 cut(s)	2014
BfoI	RGCGCY	3 cut(s)	846, 1846, 2095
BfuAI	ACCTGC	2 cut(s)	1847, 2096
BglII	AGATCT	1 cut(s)	358
BisI	GCNGC	3 cut(s)	656, 799, 1694
BlsI	GCNGC	3 cut(s)	657, 800, 1695
Bme1390I	CCNGG	5 cut(s)	133, 485, 1731, 1840, 2089
Bme18I	GGWCC	2 cut(s)	487, 677
BmeT110I	CYCGRG	1 cut(s)	1610
BmgT120I	GGNCC	5 cut(s)	45, 93, 487, 534, 677
BmiI	GGNNCC	4 cut(s)	163, 452, 1844, 2093
BmrFI	CCNGG	5 cut(s)	133, 485, 1731, 1840, 2089
BmrI	ACTGGG	2 cut(s)	552, 1586
BmsI	GCATC	3 cut(s)	978, 1812, 1906
BmuI	ACTGGG	2 cut(s)	552, 1586
BpiI	GAAGAC	1 cut(s)	1791
BplI	GAGNNNNNCTC	4 cut(s)	1066, 1098, 1268, 1300
Bpu10I	CCTNAGC	1 cut(s)	1422
BpuEI	CTTGAG	2 cut(s)	347, 1295
BpuMI	CCSGG	2 cut(s)	1840, 2089
BsaAI	YACGTR	1 cut(s)	1221
BsaHI	GRCGYC	2 cut(s)	1843, 2092
BsaI	GGTCTC	1 cut(s)	900
BsaJI	CCNNGG	3 cut(s)	688, 1233, 1799
BsaWI	WCCGGW	1 cut(s)	447
Bsc4I	CCNNNNNNNGG	4 cut(s)	484, 531, 918, 1523
Bse1I	ACTGG	4 cut(s)	558, 679, 1068, 1581
Bse21I	CCTNAGG	2 cut(s)	2006, 2255
Bse3DI	GCAATG	8 cut(s)	306, 438, 785, 801, 912, 953, 1947, 2196
BseAI	TCCGGA	1 cut(s)	447
BseBI	CCWGG	3 cut(s)	133, 485, 1731
BseDI	CCNNGG	3 cut(s)	688, 1233, 1799
BseGI	GGATG	5 cut(s)	341, 868, 1119, 1795, 1921
BseLI	CCNNNNNNNGG	4 cut(s)	484, 531, 918, 1523
BseMI	GCAATG	8 cut(s)	306, 438, 785, 801, 912, 953, 1947, 2196
BseMII	CTCAG	6 cut(s)	211, 891, 1299, 1436, 2020, 2269
BseNI	ACTGG	4 cut(s)	558, 679, 1068, 1581
BseRI	GAGGAG	1 cut(s)	374
BseSI	GKGCMC	2 cut(s)	1063, 2235
BseXI	GCAGC	1 cut(s)	667
BseYI	CCCAGC	1 cut(s)	1466
BshFI	GGCC	5 cut(s)	46, 95, 131, 536, 1312
BshNI	GGYRCC	3 cut(s)	161, 1842, 2091
BsiHKAI	GWGCWC	1 cut(s)	2369
BsiHKCI	CYCGRG	1 cut(s)	1610
BsiSI	CCGG	4 cut(s)	420, 448, 1840, 2089
BslFI	GGGAC	2 cut(s)	1144, 1254
BslI	CCNNNNNNNGG	4 cut(s)	484, 531, 918, 1523
BsmAI	GTCTC	3 cut(s)	665, 900, 2322
BsmFI	GGGAC	2 cut(s)	1144, 1254
BsmI	GAATGC	1 cut(s)	928
BsnI	GGCC	5 cut(s)	46, 95, 131, 536, 1312
Bso31I	GGTCTC	1 cut(s)	900
BsoBI	CYCGRG	1 cut(s)	1610
Bsp1286I	GDGCHC	4 cut(s)	1063, 1084, 2235, 2369
Bsp13I	TCCGGA	1 cut(s)	447
Bsp19I	CCATGG	1 cut(s)	688
BspACI	CCGC	7 cut(s)	725, 758, 798, 935, 1523, 1658, 1693
BspANI	GGCC	5 cut(s)	46, 95, 131, 536, 1312
BspCNI	CTCAG	6 cut(s)	210, 892, 1298, 1435, 2019, 2268
BspEI	TCCGGA	1 cut(s)	447
BspHI	TCATGA	3 cut(s)	1765, 2026, 2275
BspLI	GGNNCC	4 cut(s)	163, 452, 1844, 2093
BspMI	ACCTGC	2 cut(s)	1847, 2096
BspPI	GGATC	6 cut(s)	19, 124, 401, 679, 803, 1074
BspT107I	GGYRCC	3 cut(s)	161, 1842, 2091
BspTNI	GGTCTC	1 cut(s)	900
BsrDI	GCAATG	8 cut(s)	306, 438, 785, 801, 912, 953, 1947, 2196
BsrI	ACTGG	4 cut(s)	558, 679, 1068, 1581
BssECI	CCNNGG	3 cut(s)	688, 1233, 1799
BssNAI	GTATAC	1 cut(s)	1218
BssNI	GRCGYC	2 cut(s)	1843, 2092
BssT1I	CCWWGG	3 cut(s)	688, 1233, 1799
Bst1107I	GTATAC	1 cut(s)	1218
Bst2UI	CCWGG	3 cut(s)	133, 485, 1731
Bst4CI	ACNGT	5 cut(s)	180, 879, 1120, 1354, 1628
Bst6I	CTCTTC	2 cut(s)	1899, 2148
BstACI	GRCGYC	2 cut(s)	1843, 2092
BstBAI	YACGTR	1 cut(s)	1221
BstC8I	GCNNGC	3 cut(s)	213, 249, 1587
BstDEI	CTNAG	7 cut(s)	197, 900, 1285, 1340, 1422, 2006, 2255
BstDSI	CCRYGG	1 cut(s)	688
BstF5I	GGATG	5 cut(s)	341, 868, 1119, 1795, 1921
BstH2I	RGCGCY	3 cut(s)	846, 1846, 2095
BstHHI	GCGC	5 cut(s)	655, 845, 946, 1845, 2094
BstMAI	GTCTC	3 cut(s)	665, 900, 2322
BstMWI	GCNNNNNNNGC	6 cut(s)	440, 923, 932, 941, 1513, 1535
BstNI	CCWGG	3 cut(s)	133, 485, 1731
BstNSI	RCATGY	3 cut(s)	731, 1150, 1507
BstSCI	CCNGG	5 cut(s)	131, 483, 1729, 1838, 2087
BstSFI	CTRYAG	1 cut(s)	2014
BstSLI	GKGCMC	2 cut(s)	1063, 2235
BstV1I	GCAGC	1 cut(s)	667
BstV2I	GAAGAC	1 cut(s)	1791
BstX2I	RGATCY	1 cut(s)	358
BstXI	CCANNNNNNTGG	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	358
BstZ17I	GTATAC	1 cut(s)	1218
Bsu36I	CCTNAGG	2 cut(s)	2006, 2255
BsuRI	GGCC	5 cut(s)	46, 95, 131, 536, 1312
BtgI	CCRYGG	1 cut(s)	688
BtgZI	GCGATG	1 cut(s)	941
BtsCI	GGATG	5 cut(s)	341, 868, 1119, 1795, 1921
BtsI	GCAGTG	1 cut(s)	1136
BtsIMutI	CAGTG	4 cut(s)	205, 1061, 1125, 1136
BveI	ACCTGC	2 cut(s)	1847, 2096
Cac8I	GCNNGC	3 cut(s)	213, 249, 1587
CaiI	CAGNNNCTG	2 cut(s)	2013, 2262
CciI	TCATGA	3 cut(s)	1765, 2026, 2275
CfoI	GCGC	5 cut(s)	655, 845, 946, 1845, 2094
Cfr13I	GGNCC	5 cut(s)	45, 93, 487, 534, 677
CseI	GACGC	2 cut(s)	57, 1578
Csp6I	GTAC	2 cut(s)	1350, 1982
CviQI	GTAC	2 cut(s)	1350, 1982
DdeI	CTNAG	7 cut(s)	197, 900, 1285, 1340, 1422, 2006, 2255
DinI	GGCGCC	2 cut(s)	1844, 2093
DraI	TTTAAA	2 cut(s)	1927, 2176
EaeI	YGGCCR	1 cut(s)	1310
Eam1104I	CTCTTC	2 cut(s)	1899, 2148
EarI	CTCTTC	2 cut(s)	1899, 2148
Eco130I	CCWWGG	3 cut(s)	688, 1233, 1799
Eco24I	GRGCYC	1 cut(s)	1084
Eco31I	GGTCTC	1 cut(s)	900
Eco32I	GATATC	3 cut(s)	2046, 2083, 2295
Eco47I	GGWCC	2 cut(s)	487, 677
Eco47III	AGCGCT	1 cut(s)	844
Eco81I	CCTNAGG	2 cut(s)	2006, 2255
Eco88I	CYCGRG	1 cut(s)	1610
EcoO109I	RGGNCCY	1 cut(s)	534
EcoRI	GAATTC	2 cut(s)	271, 1769
EcoRII	CCWGG	3 cut(s)	131, 483, 1729
EcoRV	GATATC	3 cut(s)	2046, 2083, 2295
EcoT14I	CCWWGG	3 cut(s)	688, 1233, 1799
EcoT22I	ATGCAT	3 cut(s)	308, 1090, 1921
EcoT38I	GRGCYC	1 cut(s)	1084
EgeI	GGCGCC	2 cut(s)	1844, 2093
EheI	GGCGCC	2 cut(s)	1844, 2093
ErhI	CCWWGG	3 cut(s)	688, 1233, 1799
FaqI	GGGAC	2 cut(s)	1144, 1254
FauI	CCCGC	3 cut(s)	732, 928, 1516
FbaI	TGATCA	1 cut(s)	528
FblI	GTMKAC	3 cut(s)	336, 1217, 1381
Fnu4HI	GCNGC	3 cut(s)	656, 799, 1694
FokI	GGATG	5 cut(s)	328, 875, 1126, 1782, 1928
FriOI	GRGCYC	1 cut(s)	1084
Fsp4HI	GCNGC	3 cut(s)	656, 799, 1694
FspBI	CTAG	6 cut(s)	332, 960, 1244, 1364, 1427, 1551
FspI	TGCGCA	2 cut(s)	654, 945
GlaI	GCGC	5 cut(s)	654, 844, 945, 1844, 2093
GluI	GCNGC	3 cut(s)	656, 799, 1694
GsaI	CCCAGC	1 cut(s)	1470
HaeII	RGCGCY	3 cut(s)	846, 1846, 2095
HaeIII	GGCC	5 cut(s)	46, 95, 131, 536, 1312
HapII	CCGG	4 cut(s)	420, 448, 1840, 2089
HgaI	GACGC	2 cut(s)	57, 1578
HhaI	GCGC	5 cut(s)	655, 845, 946, 1845, 2094
Hin1I	GRCGYC	2 cut(s)	1843, 2092
Hin6I	GCGC	5 cut(s)	653, 843, 944, 1843, 2092
HinP1I	GCGC	5 cut(s)	653, 843, 944, 1843, 2092
HincII	GTYRAC	3 cut(s)	205, 1382, 1450
HindII	GTYRAC	3 cut(s)	205, 1382, 1450
HindIII	AAGCTT	4 cut(s)	565, 966, 1667, 1724
HinfI	GANTC	6 cut(s)	338, 480, 585, 1391, 1621, 1661
HpaII	CCGG	4 cut(s)	420, 448, 1840, 2089
HphI	GGTGA	8 cut(s)	404, 1021, 1120, 1207, 1274, 1592, 2336, 2372
Hpy166II	GTNNAC	5 cut(s)	205, 337, 1218, 1382, 1450
Hpy188I	TCNGA	4 cut(s)	73, 229, 828, 1566
Hpy188III	TCNNGA	8 cut(s)	268, 276, 448, 812, 1593, 1766, 2027, 2276
Hpy8I	GTNNAC	5 cut(s)	205, 337, 1218, 1382, 1450
Hpy99I	CGWCG	3 cut(s)	73, 1383, 1594
HpyAV	CCTTC	9 cut(s)	104, 526, 690, 1195, 1295, 1367, 1699, 1970, 2219
HpyCH4III	ACNGT	5 cut(s)	180, 879, 1120, 1354, 1628
HpyCH4IV	ACGT	1 cut(s)	1220
HpyF10VI	GCNNNNNNNGC	6 cut(s)	440, 923, 932, 941, 1513, 1535
HpyF3I	CTNAG	7 cut(s)	197, 900, 1285, 1340, 1422, 2006, 2255
HpySE526I	ACGT	1 cut(s)	1220
Hsp92I	GRCGYC	2 cut(s)	1843, 2092
HspAI	GCGC	5 cut(s)	653, 843, 944, 1843, 2092
KasI	GGCGCC	2 cut(s)	1842, 2091
Kpn2I	TCCGGA	1 cut(s)	447
Ksp22I	TGATCA	1 cut(s)	528
LmnI	GCTCC	4 cut(s)	237, 554, 775, 1548
Lsp1109I	GCAGC	1 cut(s)	667
LweI	GCATC	3 cut(s)	978, 1812, 1906
MaeI	CTAG	6 cut(s)	332, 960, 1244, 1364, 1427, 1551
MaeII	ACGT	1 cut(s)	1220
MaeIII	GTNAC	7 cut(s)	494, 599, 1049, 1120, 1321, 2032, 2281
MfeI	CAATTG	2 cut(s)	261, 324
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	4 cut(s)	1063, 1084, 2235, 2369
Mly113I	GGCGCC	2 cut(s)	1843, 2092
MlyI	GAGTC	3 cut(s)	332, 489, 1385
MmeI	TCCRAC	3 cut(s)	51, 498, 1339
Mph1103I	ATGCAT	3 cut(s)	308, 1090, 1921
MroI	TCCGGA	1 cut(s)	447
MroXI	GAANNNNTTC	1 cut(s)	1305
MseI	TTAA	7 cut(s)	290, 390, 630, 743, 1497, 1926, 2175
MslI	CAYNNNNRTG	2 cut(s)	1508, 1524
MspI	CCGG	4 cut(s)	420, 448, 1840, 2089
MspR9I	CCNGG	5 cut(s)	133, 485, 1731, 1840, 2089
MssI	GTTTAAAC	2 cut(s)	1927, 2176
MunI	CAATTG	2 cut(s)	261, 324
Mva1269I	GAATGC	1 cut(s)	928
MvaI	CCWGG	3 cut(s)	133, 485, 1731
MwoI	GCNNNNNNNGC	6 cut(s)	440, 923, 932, 941, 1513, 1535
NarI	GGCGCC	2 cut(s)	1843, 2092
NciI	CCSGG	2 cut(s)	1840, 2089
NcoI	CCATGG	1 cut(s)	688
NlaIV	GGNNCC	4 cut(s)	163, 452, 1844, 2093
NmuCI	GTSAC	3 cut(s)	494, 1049, 1120
NsbI	TGCGCA	2 cut(s)	654, 945
NsiI	ATGCAT	3 cut(s)	308, 1090, 1921
NspI	RCATGY	3 cut(s)	731, 1150, 1507
PaeR7I	CTCGAG	1 cut(s)	1610
PagI	TCATGA	3 cut(s)	1765, 2026, 2275
PciI	ACATGT	1 cut(s)	1146
PcsI	WCGNNNNNNNCGW	1 cut(s)	1468
PctI	GAATGC	1 cut(s)	928
PdmI	GAANNNNTTC	1 cut(s)	1305
PfeI	GAWTC	3 cut(s)	585, 1621, 1661
PflMI	CCANNNNNTGG	1 cut(s)	918
PfoI	TCCNGGA	1 cut(s)	483
PkrI	GCNGC	3 cut(s)	657, 800, 1695
PleI	GAGTC	3 cut(s)	332, 488, 1385
PluTI	GGCGCC	2 cut(s)	1846, 2095
PmeI	GTTTAAAC	2 cut(s)	1927, 2176
PpsI	GAGTC	3 cut(s)	332, 488, 1385
Ppu21I	YACGTR	1 cut(s)	1221
PscI	ACATGT	1 cut(s)	1146
Psp6I	CCWGG	3 cut(s)	131, 483, 1729
PspFI	CCCAGC	1 cut(s)	1466
PspGI	CCWGG	3 cut(s)	131, 483, 1729
PspN4I	GGNNCC	4 cut(s)	163, 452, 1844, 2093
PspPI	GGNCC	5 cut(s)	45, 93, 487, 534, 677
PspXI	VCTCGAGB	1 cut(s)	1610
PstNI	CAGNNNCTG	2 cut(s)	2013, 2262
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	2 cut(s)	1351, 1983
RsaNI	GTAC	2 cut(s)	1350, 1982
RseI	CAYNNNNRTG	2 cut(s)	1508, 1524
SalI	GTCGAC	1 cut(s)	1380
SaqAI	TTAA	7 cut(s)	290, 390, 630, 743, 1497, 1926, 2175
SatI	GCNGC	3 cut(s)	656, 799, 1694
Sau96I	GGNCC	5 cut(s)	45, 93, 487, 534, 677
SchI	GAGTC	3 cut(s)	332, 489, 1385
ScrFI	CCNGG	5 cut(s)	133, 485, 1731, 1840, 2089
SduI	GDGCHC	4 cut(s)	1063, 1084, 2235, 2369
SfaNI	GCATC	3 cut(s)	978, 1812, 1906
SfcI	CTRYAG	1 cut(s)	2014
SfoI	GGCGCC	2 cut(s)	1844, 2093
Sfr274I	CTCGAG	1 cut(s)	1610
SinI	GGWCC	2 cut(s)	487, 677
SlaI	CTCGAG	1 cut(s)	1610
SmiMI	CAYNNNNRTG	2 cut(s)	1508, 1524
SmlI	CTYRAG	3 cut(s)	362, 1274, 1610
SmoI	CTYRAG	3 cut(s)	362, 1274, 1610
SpeI	ACTAGT	2 cut(s)	331, 1363
SsiI	CCGC	7 cut(s)	725, 758, 798, 935, 1523, 1658, 1693
SspDI	GGCGCC	2 cut(s)	1842, 2091
SspI	AATATT	3 cut(s)	157, 470, 747
SspMI	CTAG	6 cut(s)	332, 960, 1244, 1364, 1427, 1551
StyD4I	CCNGG	5 cut(s)	131, 483, 1729, 1838, 2087
StyI	CCWWGG	3 cut(s)	688, 1233, 1799
TaaI	ACNGT	5 cut(s)	180, 879, 1120, 1354, 1628
TaiI	ACGT	1 cut(s)	1223
TatI	WGTACW	1 cut(s)	1349
TauI	GCSGC	2 cut(s)	801, 1696
TfiI	GAWTC	3 cut(s)	585, 1621, 1661
Tru1I	TTAA	7 cut(s)	290, 390, 630, 743, 1497, 1926, 2175
Tru9I	TTAA	7 cut(s)	290, 390, 630, 743, 1497, 1926, 2175
TscAI	CASTG	4 cut(s)	205, 1068, 1125, 1143
TseFI	GTSAC	3 cut(s)	494, 1049, 1120
TseI	GCWGC	1 cut(s)	655
Tsp45I	GTSAC	3 cut(s)	494, 1049, 1120
TspRI	CASTG	4 cut(s)	205, 1068, 1125, 1143
Van91I	CCANNNNNTGG	1 cut(s)	918
VpaK11BI	GGWCC	2 cut(s)	487, 677
XapI	RAATTY	2 cut(s)	271, 1769
XceI	RCATGY	3 cut(s)	731, 1150, 1507
XcmI	CCANNNNNNNNNTGG	2 cut(s)	481, 2354
XhoI	CTCGAG	1 cut(s)	1610
XmiI	GTMKAC	3 cut(s)	336, 1217, 1381
XmnI	GAANNNNTTC	1 cut(s)	1305
XspI	CTAG	6 cut(s)	332, 960, 1244, 1364, 1427, 1551
Zsp2I	ATGCAT	3 cut(s)	308, 1090, 1921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.