Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001827

Physical Location & Seq

Genomic Coordinates Forward (+)

50264940 .. 50272423

Gene Structure 7484 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0327600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2622 bp

ATGGCGCCGAGGCTCGGCTCCGGCGACGTGTCCGGCTTCAAGTTCCTTCTCTTTCTCGTCGCGATTTACGGCCTCATCGCCGTCCTGGTGCACTCGATTCTCCACATGCGCTTCATTACGCCGCTTGGGATCGACGCGCCGCTCGATCGATTCTCCGAGGCTCGAGCCGTCGAGCACGTTCGAGTCCTGGCCAAAGATATCGATAGCCGCCAGGAAGGGAGTCCTGGATTGAGAGAAGCTGCTCGATATATTACAGCGCAGTTGGAGATGGTAAAGGAGCGAGCTGGACCTAACTTTAGAGTTGAGATAGAAGAGACTGTTGTGAATGGCACATTTAATATGCTGTTTTTAGGCTATAGCATATCTCTGGGGTACAGAAACCACACAAATATTGTGATGAGAATATCATCAGTAGATTCACAAGACTCTGATCCGTCAGTATTGTTGAATGGCCATTTTGATAGTCCACTTGGTTCTCCGGGTGCTGGTGATTGTGGGTCATGTGTAGCATCAATGCTGGAAATAGCAAGACTTATTGTGGACTCTGGATGGGTTCCCCCTCAGCCTGTTATTTTTCTTTTTAATGGTGCAGAAGAGCTCTTTTTGCTGGGGTCTCATGGCTTCATGAAGACACATAAATGGCGTGAAACTATTGGGGCTTTTATAAATGTGGAAGCGTCGGGGACAGGCGGTCCTGATTTAGTTTGCCAATCAGGACCTAGTTCCTGGCCTTCTCAGGTCTATGCTCAATCAGCAGTATATCCCATGGCACATAGCGCAGCCCAGGATGTTTTTCCTGTTGTTCCTGGAGATACAGATTTTCGAATATTTTCCGAGGACTATGGTGACATTCCTGGCTTGGATATTATCTTTCTCCTTGGCGGTTATTTTTATCATACATCCTTCGATACAGTGGAGAGACTATTACCTGGAAGTATACAAGCTCGTGGAGAAAATCTGTTTAGCATGCTTAAAGCCTTCACCAATTCTTCTACGCTACAAAATACTCTCGAAAGACATTCTATTGTATCAACTGCGAAGCAGCATGAGGATGGACGTGCTGTTTTCTTTGATTATTTAACATGGTTCATGATATACTATTCTCGGAAGGTAGCTATGGTACTTCACCCTATTCCTATTGGCATCTTCCTGGCTATGCCATTTTTCTCACAAAAGCAGAATCCTGGGCTCCTACCTTGGTTTGCTACTTTCAGCAATTTTGTAAAAGGAATGCTTTTCCATGCTGCTGGGGTTTTTCTAGCAATTGTAATTCCGGTTATCTTTTCCATCGTGAGATTGTTGTTTGCTAGTCGTGCAATGAACTGGTTTGCTCATCCATATTTGGCTTATTTGATGTTCATACCTTGCTCTCTTGTTGGTCTGTTAATTCCAAGATTTGTTTGGAGTAGCTTTCCCCTCACTCAAGAGGCATCAGTTGTCAAGTCTTTAAAAGAGGCTTTATCGGATGAAGCAAGGTTCTGGGGAGCTTTTGGATTATACGCTACAATAACTGTGGCTTACCTGTATGCTGGGTTGAGCGGAGGCTTCTTGACTTTTTCACTGTCCGTTTCTATGCTTCTTGGATGGATTTCATATTGCTTAGCAGTCAAATTATTTGGTCGCCAATCACTCAGGTCAACGTTAGTTTATATGTTACCTATACTTCCATGCCTTGCGTACTCTGTGTATTTTGGTGCATTTCTTGTCCAGTTTTTGGTTGAAAAGATGGGTATGATGGGTGCTTTGCCACCTCCATATGGTTATTTCGTTCCTGACATTGTGGTGGCCGCAGTAATTGGAGTTGTTACCAGTTGGTCTGTAGGCCCTCTGATACCTATTTGCGGTCACTGGTTAGCCAGGTCATCCATTTTGCAAGTCTTGTTGCATCTTAGTGTGCTAGGCTTGGCTCTGTCATCTCAGTTCTTTCCATATAGCACGGGTGCACCTAAGAGAGTTGTTTTCCAGCATACTTTTCTTACTGCAGATGCAAATCATGTTGTGGAGTCCAGCTATGATTTTTCTGTTGTGGATTCCAATTCGTTACTATTTCTTTTCAAACATGCACCCAAGGTGGCAAAGGAATTGCACATTAGTTCAGAGTTGTCTTTTGAAACTGCAAAGTCATCTCACCGAGAGACTTGGATGGGACTTTTTCCTGTTTCTTTTTTGTTTTCAAGAAGCTTGAAGTTCCCCGCAAGAAGTGATGGTATTTTAAAGCAATACGGGCAGTTCCCTCATCTGTCCACTTATAAGCCACATACAGTATTTGGCGAGGAATCTCGTAGAATATACTTGGAACTGTCTTTAGGTTCCTTAGAGGAGGTTTGGGTTGCAGTCCTCAATATTACAGGCCCTTTATCTAGTTGGTCATTTGCAGACAATACACTTTCAGCTACTGAAACATCTGATGGAGGTCCACCATCATACATATGCCGACTTAGTGGAGCAAGTCCTGAGAATTGGACCTTCTGGTTAGAGGCTAACAGTTCTGAAGATCTAAGGGTAGAAGTTGCTGTCGTAGATCAATATATGGTTGATGAAACAAAGAAGCTGAAAGGGCTTTTTCCGGAGTGGGTGGATGTAGTTGCTTATTCGGGCTTTTTGTCGAGTTATATTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

873

Amino Acids

96.67

Weight (kDa)

5.98

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M28	PF04389	130 - 321	5.7e-44	Peptidase family M28
ERMP1_C	PF22248	648 - 871	3.3e-31	Endoplasmic reticulum metallopeptidase 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27045 AT1G27045 AT1G27045 AT1G27045 AT1G27045
fragaria_vesca	FvH4_4g32060 FvH4_5g15520 FvH4_5g15520 FvH4_5g15520
malus_domestica	MD06G1032300.v1.1 MD06G1187600.v1.1 MD13G1030700.v1.1 MD13G1079500.v1.1 MD14G1194000.v1.1 MD16G1079400.v1.1
prunus_persica	Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.5G185900_v2.0.a1
pyrus_communis	pycom06g16680 pycom13g06920 pycom14g16140 pycom16g06860
rosa_chinensis	RchiOBHm_Chr4g0440751 RchiOBHm_Chr7g0180571
rosa_laevigata	RLG00000005254 RLG00000006157
rosa_multiflora	Rmu_sc0000424.1_g000003 Rmu_sc0005690.1_g000017 Rmu_sc0008018.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272780 Rroxscaffold_5G00381510
rosa_rugosa	Rorug04G0327600 Rorug06G0433800
rosa_samantha	Rh4AG379400 Rh4BG392200 Rh4BG392300 Rh4CG406900 Rh4CG407000 Rh4DG386100 Rh7AG035200 Rh7BG035100 Rh7CG036700 Rh7DG035400
rosa_wichuraiana	Rw4G032630 Rw4G032660 Rw7G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	665, 2250
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	1714
AccBSI	CCGCTC	2 cut(s)	142, 1539
AccI	GTMKAC	1 cut(s)	937
AccII	CGCG	2 cut(s)	62, 137
AccIII	TCCGGA	1 cut(s)	2566
AciI	CCGC	9 cut(s)	122, 140, 208, 690, 882, 1539, 1788, 1842, 2193
AclI	AACGTT	1 cut(s)	1640
AclWI	GGATC	2 cut(s)	137, 425
AcoI	YGGCCR	3 cut(s)	189, 451, 1785
AcuI	CTGAAG	1 cut(s)	2511
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	374, 1122, 1679
AfiI	CCNNNNNNNGG	5 cut(s)	14, 485, 1714, 1757, 1841
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	7 cut(s)	40, 448, 1721, 2056, 2111, 2175, 2185
AhdI	GACNNNNNGTC	1 cut(s)	690
AjiI	CACGTC	2 cut(s)	28, 1058
Alw21I	GWGCWC	4 cut(s)	93, 177, 600, 1945
Alw26I	GTCTC	4 cut(s)	308, 618, 913, 2129
Alw44I	GTGCAC	2 cut(s)	89, 1941
AlwI	GGATC	2 cut(s)	137, 425
AlwNI	CAGNNNCTG	1 cut(s)	2396
Ama87I	CYCGRG	1 cut(s)	162
Aor13HI	TCCGGA	1 cut(s)	2566
AoxI	GGCC	7 cut(s)	70, 189, 451, 728, 1785, 1822, 2350
ApaLI	GTGCAC	2 cut(s)	89, 1941
ApeKI	GCWGC	4 cut(s)	239, 779, 1042, 1244
Asp700I	GAANNNNTTC	1 cut(s)	829
AspLEI	GCGC	5 cut(s)	7, 111, 139, 259, 779
AspS9I	GGNCC	7 cut(s)	287, 692, 716, 1823, 2351, 2414, 2463
AsuC2I	CCSGG	1 cut(s)	480
AsuHPI	GGTGA	5 cut(s)	500, 857, 973, 1118, 2120
AsuII	TTCGAA	1 cut(s)	823
AvaI	CYCGRG	1 cut(s)	162
AvaII	GGWCC	5 cut(s)	287, 692, 716, 2414, 2463
BaeGI	GKGCMC	2 cut(s)	93, 1945
BalI	TGGCCA	2 cut(s)	191, 453
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	600, 1191
BauI	CACGAG	1 cut(s)	945
BbsI	GAAGAC	1 cut(s)	635
Bbv12I	GWGCWC	4 cut(s)	93, 177, 600, 1945
BbvCI	CCTCAGC	1 cut(s)	561
BbvI	GCAGC	4 cut(s)	226, 791, 1054, 1231
BceAI	ACGGC	3 cut(s)	65, 85, 152
BcnI	CCSGG	1 cut(s)	480
BcoDI	GTCTC	4 cut(s)	308, 618, 913, 2129
BfaI	CTAG	6 cut(s)	720, 1259, 1308, 1898, 2361, 2620
BfmI	CTRYAG	3 cut(s)	355, 1818, 1980
BfoI	RGCGCY	1 cut(s)	8
BglII	AGATCT	1 cut(s)	2494
BisI	GCNGC	8 cut(s)	122, 140, 208, 240, 780, 1043, 1245, 1788
BlpI	GCTNAGC	1 cut(s)	1600
BlsI	GCNGC	8 cut(s)	123, 141, 209, 241, 781, 1044, 1246, 1789
Bme18I	GGWCC	5 cut(s)	287, 692, 716, 2414, 2463
BmeRI	GACNNNNNGTC	1 cut(s)	690
BmeT110I	CYCGRG	1 cut(s)	162
BmgBI	CACGTC	2 cut(s)	28, 1058
BmgT120I	GGNCC	7 cut(s)	287, 692, 716, 1823, 2351, 2414, 2463
BmiI	GGNNCC	5 cut(s)	6, 19, 555, 1190, 2311
BmsI	GCATC	5 cut(s)	518, 1152, 1439, 1894, 1975
BpiI	GAAGAC	1 cut(s)	635
BpmI	CTGGAG	1 cut(s)	828
Bpu10I	CCTNAGC	1 cut(s)	561
Bpu1102I	GCTNAGC	1 cut(s)	1600
Bpu14I	TTCGAA	1 cut(s)	823
BpuEI	CTTGAG	1 cut(s)	1407
BpuMI	CCSGG	1 cut(s)	480
Bsa29I	ATCGAT	2 cut(s)	148, 201
BsaBI	GATNNNNATC	1 cut(s)	1989
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	618
BsaJI	CCNNGG	9 cut(s)	8, 156, 765, 783, 834, 877, 1184, 1196, 2067
BsaWI	WCCGGW	2 cut(s)	1273, 2566
Bsc4I	CCNNNNNNNGG	5 cut(s)	14, 485, 1714, 1757, 1841
Bse1I	ACTGG	4 cut(s)	1328, 1708, 1809, 1853
Bse3DI	GCAATG	1 cut(s)	1323
Bse8I	GATNNNNATC	1 cut(s)	1989
BseAI	TCCGGA	1 cut(s)	2566
BseCI	ATCGAT	2 cut(s)	148, 201
BseDI	CCNNGG	9 cut(s)	8, 156, 765, 783, 834, 877, 1184, 1196, 2067
BseJI	GATNNNNATC	1 cut(s)	1989
BseLI	CCNNNNNNNGG	5 cut(s)	14, 485, 1714, 1757, 1841
BseMI	GCAATG	1 cut(s)	1323
BseMII	CTCAG	5 cut(s)	575, 749, 1645, 1931, 2445
BseNI	ACTGG	4 cut(s)	1328, 1708, 1809, 1853
BseRI	GAGGAG	1 cut(s)	2333
BseSI	GKGCMC	2 cut(s)	93, 1945
BseXI	GCAGC	4 cut(s)	226, 791, 1054, 1231
BseYI	CCCAGC	3 cut(s)	607, 1247, 1529
BsgI	GTGCAG	1 cut(s)	609
Bsh1236I	CGCG	2 cut(s)	62, 137
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	7 cut(s)	72, 191, 453, 730, 1787, 1824, 2352
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	2 cut(s)	148, 201
BsiEI	CGRYCG	1 cut(s)	148
BsiHKAI	GWGCWC	4 cut(s)	93, 177, 600, 1945
BsiHKCI	CYCGRG	1 cut(s)	162
BsiSI	CCGG	5 cut(s)	21, 33, 479, 1274, 2567
BslFI	GGGAC	2 cut(s)	697, 2160
BslI	CCNNNNNNNGG	5 cut(s)	14, 485, 1714, 1757, 1841
BsmAI	GTCTC	4 cut(s)	308, 618, 913, 2129
BsmFI	GGGAC	2 cut(s)	697, 2160
BsmI	GAATGC	1 cut(s)	1236
BsnI	GGCC	7 cut(s)	72, 191, 453, 730, 1787, 1824, 2352
Bso31I	GGTCTC	1 cut(s)	618
BsoBI	CYCGRG	1 cut(s)	162
Bsp119I	TTCGAA	1 cut(s)	823
Bsp1286I	GDGCHC	5 cut(s)	93, 177, 600, 1191, 1945
Bsp13I	TCCGGA	1 cut(s)	2566
Bsp143I	GATC	5 cut(s)	129, 145, 430, 2494, 2521
Bsp1720I	GCTNAGC	1 cut(s)	1600
Bsp19I	CCATGG	1 cut(s)	765
Bsp68I	TCGCGA	1 cut(s)	62
BspACI	CCGC	9 cut(s)	122, 140, 208, 690, 882, 1539, 1788, 1842, 2193
BspANI	GGCC	7 cut(s)	72, 191, 453, 730, 1787, 1824, 2352
BspCNI	CTCAG	5 cut(s)	574, 748, 1644, 1930, 2446
BspDI	ATCGAT	2 cut(s)	148, 201
BspEI	TCCGGA	1 cut(s)	2566
BspFNI	CGCG	2 cut(s)	62, 137
BspHI	TCATGA	2 cut(s)	624, 1089
BspLI	GGNNCC	5 cut(s)	6, 19, 555, 1190, 2311
BspMAI	CTGCAG	1 cut(s)	1984
BspPI	GGATC	2 cut(s)	137, 425
BspQI	GCTCTTC	1 cut(s)	588
BspT104I	TTCGAA	1 cut(s)	823
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	618
BsrBI	CCGCTC	2 cut(s)	142, 1539
BsrDI	GCAATG	1 cut(s)	1323
BsrI	ACTGG	4 cut(s)	1328, 1708, 1809, 1853
BssECI	CCNNGG	9 cut(s)	8, 156, 765, 783, 834, 877, 1184, 1196, 2067
BssMI	GATC	5 cut(s)	129, 145, 430, 2494, 2521
BssNAI	GTATAC	1 cut(s)	938
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	945
BssT1I	CCWWGG	4 cut(s)	765, 877, 1196, 2067
Bst1107I	GTATAC	1 cut(s)	938
Bst2BI	CACGAG	1 cut(s)	945
Bst4CI	ACNGT	7 cut(s)	319, 913, 1513, 1563, 2263, 2301, 2486
Bst6I	CTCTTC	2 cut(s)	306, 588
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	823
BstC8I	GCNNGC	2 cut(s)	282, 968
BstDSI	CCRYGG	1 cut(s)	765
BstFNI	CGCG	2 cut(s)	62, 137
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	5 cut(s)	7, 111, 139, 259, 779
BstKTI	GATC	5 cut(s)	132, 148, 433, 2497, 2524
BstMAI	GTCTC	4 cut(s)	308, 618, 913, 2129
BstMBI	GATC	5 cut(s)	129, 145, 430, 2494, 2521
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	6 cut(s)	604, 752, 776, 1313, 2224, 2557
BstNSI	RCATGY	3 cut(s)	109, 970, 2063
BstSFI	CTRYAG	3 cut(s)	355, 1818, 1980
BstSLI	GKGCMC	2 cut(s)	93, 1945
BstUI	CGCG	2 cut(s)	62, 137
BstV1I	GCAGC	4 cut(s)	226, 791, 1054, 1231
BstV2I	GAAGAC	1 cut(s)	635
BstX2I	RGATCY	1 cut(s)	2494
BstXI	CCANNNNNNTGG	1 cut(s)	1247
BstYI	RGATCY	1 cut(s)	2494
BstZ17I	GTATAC	1 cut(s)	938
Bsu15I	ATCGAT	2 cut(s)	148, 201
BsuRI	GGCC	7 cut(s)	72, 191, 453, 730, 1787, 1824, 2352
BsuTUI	ATCGAT	2 cut(s)	148, 201
BtgI	CCRYGG	1 cut(s)	765
BtgZI	GCGATG	1 cut(s)	61
BtrI	CACGTC	2 cut(s)	28, 1058
BtsIMutI	CAGTG	3 cut(s)	918, 1559, 1846
BtuMI	TCGCGA	1 cut(s)	62
Cac8I	GCNNGC	2 cut(s)	282, 968
CaiI	CAGNNNCTG	1 cut(s)	2396
CciI	TCATGA	2 cut(s)	624, 1089
CfoI	GCGC	5 cut(s)	7, 111, 139, 259, 779
Cfr13I	GGNCC	7 cut(s)	287, 692, 716, 1823, 2351, 2414, 2463
ClaI	ATCGAT	2 cut(s)	148, 201
CseI	GACGC	2 cut(s)	143, 666
Csp6I	GTAC	3 cut(s)	373, 1121, 1678
CspCI	CAANNNNNGTGG	2 cut(s)	1494, 1529
CviQI	GTAC	3 cut(s)	373, 1121, 1678
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	5 cut(s)	131, 147, 432, 2496, 2523
DpnII	GATC	5 cut(s)	129, 145, 430, 2494, 2521
DraI	TTTAAA	2 cut(s)	1449, 2214
DriI	GACNNNNNGTC	1 cut(s)	690
EaeI	YGGCCR	3 cut(s)	189, 451, 1785
Eam1104I	CTCTTC	2 cut(s)	306, 588
Eam1105I	GACNNNNNGTC	1 cut(s)	690
EarI	CTCTTC	2 cut(s)	306, 588
Ecl136II	GAGCTC	1 cut(s)	598
Eco130I	CCWWGG	4 cut(s)	765, 877, 1196, 2067
Eco24I	GRGCYC	2 cut(s)	600, 1191
Eco31I	GGTCTC	1 cut(s)	618
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	5 cut(s)	287, 692, 716, 2414, 2463
Eco53kI	GAGCTC	1 cut(s)	598
Eco57I	CTGAAG	1 cut(s)	2511
Eco88I	CYCGRG	1 cut(s)	162
EcoICRI	GAGCTC	1 cut(s)	598
EcoO109I	RGGNCCY	3 cut(s)	716, 1823, 2351
EcoRV	GATATC	1 cut(s)	199
EcoT14I	CCWWGG	4 cut(s)	765, 877, 1196, 2067
EcoT38I	GRGCYC	2 cut(s)	600, 1191
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	4 cut(s)	765, 877, 1196, 2067
FalI	AAGNNNNNCTT	2 cut(s)	1218, 1250
FaqI	GGGAC	2 cut(s)	697, 2160
FauI	CCCGC	1 cut(s)	2200
FauNDI	CATATG	2 cut(s)	1756, 2429
FblI	GTMKAC	1 cut(s)	937
Fnu4HI	GCNGC	8 cut(s)	122, 140, 208, 240, 780, 1043, 1245, 1788
FriOI	GRGCYC	2 cut(s)	600, 1191
Fsp4HI	GCNGC	8 cut(s)	122, 140, 208, 240, 780, 1043, 1245, 1788
FspBI	CTAG	6 cut(s)	720, 1259, 1308, 1898, 2361, 2620
GlaI	GCGC	5 cut(s)	6, 110, 138, 258, 778
GluI	GCNGC	8 cut(s)	122, 140, 208, 240, 780, 1043, 1245, 1788
GsaI	CCCAGC	3 cut(s)	611, 1251, 1533
GsuI	CTGGAG	1 cut(s)	828
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	7 cut(s)	72, 191, 453, 730, 1787, 1824, 2352
HapII	CCGG	5 cut(s)	21, 33, 479, 1274, 2567
HgaI	GACGC	2 cut(s)	143, 666
HhaI	GCGC	5 cut(s)	7, 111, 139, 259, 779
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	5 cut(s)	5, 109, 137, 257, 777
HinP1I	GCGC	5 cut(s)	5, 109, 137, 257, 777
HincII	GTYRAC	1 cut(s)	1638
HindII	GTYRAC	1 cut(s)	1638
HindIII	AAGCTT	1 cut(s)	2179
HpaII	CCGG	5 cut(s)	21, 33, 479, 1274, 2567
HphI	GGTGA	5 cut(s)	500, 857, 973, 1118, 2120
Hpy166II	GTNNAC	8 cut(s)	91, 467, 541, 938, 1638, 1943, 2244, 2417
Hpy188I	TCNGA	9 cut(s)	157, 430, 835, 1107, 1465, 1830, 2098, 2407, 2491
Hpy8I	GTNNAC	8 cut(s)	91, 467, 541, 938, 1638, 1943, 2244, 2417
Hpy99I	CGWCG	5 cut(s)	29, 62, 137, 173, 682
HpyAV	CCTTC	7 cut(s)	56, 209, 741, 913, 988, 1102, 2476
HpyCH4III	ACNGT	7 cut(s)	319, 913, 1513, 1563, 2263, 2301, 2486
HpyCH4IV	ACGT	4 cut(s)	27, 177, 1057, 1640
HpyF10VI	GCNNNNNNNGC	6 cut(s)	604, 752, 776, 1313, 2224, 2557
HpySE526I	ACGT	4 cut(s)	27, 177, 1057, 1640
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	5 cut(s)	5, 109, 137, 257, 777
KasI	GGCGCC	1 cut(s)	4
Kpn2I	TCCGGA	1 cut(s)	2566
Kzo9I	GATC	5 cut(s)	129, 145, 430, 2494, 2521
LguI	GCTCTTC	1 cut(s)	588
LmnI	GCTCC	5 cut(s)	23, 277, 1194, 1484, 2444
Lsp1109I	GCAGC	4 cut(s)	226, 791, 1054, 1231
LweI	GCATC	5 cut(s)	518, 1152, 1439, 1894, 1975
MaeI	CTAG	6 cut(s)	720, 1259, 1308, 1898, 2361, 2620
MaeII	ACGT	4 cut(s)	27, 177, 1057, 1640
MaeIII	GTNAC	5 cut(s)	845, 1653, 1804, 1844, 2040
MalI	GATC	5 cut(s)	131, 147, 432, 2496, 2523
MbiI	CCGCTC	2 cut(s)	142, 1539
MboI	GATC	5 cut(s)	129, 145, 430, 2494, 2521
MboII	GAAGA	6 cut(s)	323, 605, 640, 981, 1138, 2504
MfeI	CAATTG	1 cut(s)	1263
MflI	RGATCY	1 cut(s)	2494
MhlI	GDGCHC	5 cut(s)	93, 177, 600, 1191, 1945
MlsI	TGGCCA	2 cut(s)	191, 453
MluNI	TGGCCA	2 cut(s)	191, 453
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	5 cut(s)	192, 229, 419, 536, 2012
MmeI	TCCRAC	1 cut(s)	243
Mox20I	TGGCCA	2 cut(s)	191, 453
MroI	TCCGGA	1 cut(s)	2566
MroXI	GAANNNNTTC	1 cut(s)	829
MscI	TGGCCA	2 cut(s)	191, 453
MseI	TTAA	7 cut(s)	336, 582, 972, 1079, 1385, 1448, 2213
MslI	CAYNNNNRTG	5 cut(s)	637, 1050, 1781, 1890, 2428
Msp20I	TGGCCA	2 cut(s)	191, 453
MspI	CCGG	5 cut(s)	21, 33, 479, 1274, 2567
MunI	CAATTG	1 cut(s)	1263
Mva1269I	GAATGC	1 cut(s)	1236
MvnI	CGCG	2 cut(s)	62, 137
MwoI	GCNNNNNNNGC	6 cut(s)	604, 752, 776, 1313, 2224, 2557
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	480
NcoI	CCATGG	1 cut(s)	765
NdeI	CATATG	2 cut(s)	1756, 2429
NdeII	GATC	5 cut(s)	129, 145, 430, 2494, 2521
NlaIV	GGNNCC	5 cut(s)	6, 19, 555, 1190, 2311
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	2 cut(s)	845, 1844
NruI	TCGCGA	1 cut(s)	62
NspI	RCATGY	3 cut(s)	109, 970, 2063
NspV	TTCGAA	1 cut(s)	823
PaeI	GCATGC	1 cut(s)	970
PaeR7I	CTCGAG	1 cut(s)	162
PagI	TCATGA	2 cut(s)	624, 1089
PciSI	GCTCTTC	1 cut(s)	588
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 141
PctI	GAATGC	1 cut(s)	1236
PdmI	GAANNNNTTC	1 cut(s)	829
PfeI	GAWTC	6 cut(s)	97, 150, 416, 1180, 2030, 2276
PflMI	CCANNNNNTGG	1 cut(s)	1714
PfoI	TCCNGGA	2 cut(s)	223, 805
PkrI	GCNGC	8 cut(s)	123, 141, 209, 241, 781, 1044, 1246, 1789
Ple19I	CGATCG	1 cut(s)	148
PleI	GAGTC	5 cut(s)	191, 228, 419, 536, 2011
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	5 cut(s)	191, 228, 419, 536, 2011
PpuMI	RGGWCCY	1 cut(s)	716
PsiI	TTATAA	2 cut(s)	665, 2250
Psp124BI	GAGCTC	1 cut(s)	600
Psp1406I	AACGTT	1 cut(s)	1640
Psp5II	RGGWCCY	1 cut(s)	716
PspFI	CCCAGC	3 cut(s)	607, 1247, 1529
PspN4I	GGNNCC	5 cut(s)	6, 19, 555, 1190, 2311
PspPI	GGNCC	7 cut(s)	287, 692, 716, 1823, 2351, 2414, 2463
PspPPI	RGGWCCY	1 cut(s)	716
PspXI	VCTCGAGB	1 cut(s)	162
PstI	CTGCAG	1 cut(s)	1984
PstNI	CAGNNNCTG	1 cut(s)	2396
PsuI	RGATCY	1 cut(s)	2494
PvuI	CGATCG	1 cut(s)	148
RruI	TCGCGA	1 cut(s)	62
RsaI	GTAC	3 cut(s)	374, 1122, 1679
RsaNI	GTAC	3 cut(s)	373, 1121, 1678
RseI	CAYNNNNRTG	5 cut(s)	637, 1050, 1781, 1890, 2428
SacI	GAGCTC	1 cut(s)	600
SapI	GCTCTTC	1 cut(s)	588
SaqAI	TTAA	7 cut(s)	336, 582, 972, 1079, 1385, 1448, 2213
SatI	GCNGC	8 cut(s)	122, 140, 208, 240, 780, 1043, 1245, 1788
Sau3AI	GATC	5 cut(s)	129, 145, 430, 2494, 2521
Sau96I	GGNCC	7 cut(s)	287, 692, 716, 1823, 2351, 2414, 2463
SchI	GAGTC	5 cut(s)	192, 229, 419, 536, 2012
SduI	GDGCHC	5 cut(s)	93, 177, 600, 1191, 1945
SfaNI	GCATC	5 cut(s)	518, 1152, 1439, 1894, 1975
SfcI	CTRYAG	3 cut(s)	355, 1818, 1980
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	162
SfuI	TTCGAA	1 cut(s)	823
SinI	GGWCC	5 cut(s)	287, 692, 716, 2414, 2463
SlaI	CTCGAG	1 cut(s)	162
SmiMI	CAYNNNNRTG	5 cut(s)	637, 1050, 1781, 1890, 2428
SmlI	CTYRAG	2 cut(s)	162, 1422
SmoI	CTYRAG	2 cut(s)	162, 1422
SphI	GCATGC	1 cut(s)	970
SsiI	CCGC	9 cut(s)	122, 140, 208, 690, 882, 1539, 1788, 1842, 2193
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	3 cut(s)	391, 828, 2344
SspMI	CTAG	6 cut(s)	720, 1259, 1308, 1898, 2361, 2620
SstI	GAGCTC	1 cut(s)	600
StyI	CCWWGG	4 cut(s)	765, 877, 1196, 2067
TaaI	ACNGT	7 cut(s)	319, 913, 1513, 1563, 2263, 2301, 2486
TaiI	ACGT	4 cut(s)	30, 180, 1060, 1643
TauI	GCSGC	4 cut(s)	124, 142, 210, 1790
TfiI	GAWTC	6 cut(s)	97, 150, 416, 1180, 2030, 2276
Tru1I	TTAA	7 cut(s)	336, 582, 972, 1079, 1385, 1448, 2213
Tru9I	TTAA	7 cut(s)	336, 582, 972, 1079, 1385, 1448, 2213
TscAI	CASTG	3 cut(s)	918, 1566, 1853
TseFI	GTSAC	2 cut(s)	845, 1844
TseI	GCWGC	4 cut(s)	239, 779, 1042, 1244
Tsp45I	GTSAC	2 cut(s)	845, 1844
TspDTI	ATGAA	9 cut(s)	103, 613, 641, 1078, 1334, 1348, 1482, 1581, 2553
TspGWI	ACGGA	2 cut(s)	423, 1555
TspRI	CASTG	3 cut(s)	918, 1566, 1853
Van91I	CCANNNNNTGG	1 cut(s)	1714
VneI	GTGCAC	2 cut(s)	89, 1941
VpaK11BI	GGWCC	5 cut(s)	287, 692, 716, 2414, 2463
XceI	RCATGY	3 cut(s)	109, 970, 2063
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1398
XhoI	CTCGAG	1 cut(s)	162
XmiI	GTMKAC	1 cut(s)	937
XmnI	GAANNNNTTC	1 cut(s)	829
XspI	CTAG	6 cut(s)	720, 1259, 1308, 1898, 2361, 2620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.