Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001827

Physical Location & Seq

Genomic Coordinates Reverse (-)

20863947 .. 20865621

Gene Structure 1675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g16680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGTCCGGCGGGAGGGTCTACGGCGGCGGAAGTTCGTCCGGCCTGAGTGCTTTGTTTCAGAACCAGAGGGGTTCTGAGCGTCTTGATTCTCTATTCCTTTCTGGGTCATCAAATTCTTCGTCTGCTTCTTTTCTCGGTTCAAGATCGATCGTGAGTTTCGAAGATGTTCGTGGAGGAAGTGGATCGAATAGGTCATTGTTCCGCCAGTATGAGCACGAAGATAACGGGGACGATGACTTGGATGAGTATCTCCATCAACCTGGGAAGAAGAGGCGGCTAACCGCTGATCAAGTCCAGTTTCTCGAAAAAAGCTTTGACGTGGAAAACAAACTGGAACCGGAGAGGAAAGTCCTGCTTGCAAAGGACCTTGGCTTGCAGCCCCGGCAGGTTGCGATATGGTTCCAGAACCGCCGCGCAAGGTGGAAGACAAAACAGCTTGAGAAGGATTACGAGGAGTTGCAAGCCAACTACAATAATCTCAAGGCTGATTGTGAAAGCCTTTCCAAGGAGAATGATAAACTAAAGGCCGAGGTTACTGTCCTCTCAGACAAGCTGCATCTCAAAGAGAAAGAGGGGGGAAATTCAGAACTATCTGATACCAACAGATTATCTCAAGAACCGCCGCAGAAACCAATTGCTGACACGGTCTCTGAAGGCGAAGTATCAAAAGTCTCAGCTGTGGCCTCCAAGCAGGAAGATCTTAGTTCAGGCAGGAGTGATATATTTGACTCAGTCAGCTCACATTACACGGATGCAGTTCACTCTTCACTCTTGGAGCCTGGTGATTCTTCGTATGCTTTTGAACCTGAACAGTCTGACCTTTCCCAAGATGAAGAAGATAACTTTACCAAAAGCCTGCTGCCTCCATACATCTTCCCAAAGATTGAAGATGTTGATTACTCCGATACGCCTGCGAATTCATGTAATTACGCATTCCCGGTGGAAGATCGCGCCTTTTGGTCCTGGTCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

325

Amino Acids

36.3

Weight (kDa)

4.75

Isoelectric Point (pI)

52.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	89 - 142	7.7e-17	Homeodomain
HALZ	PF02183	144 - 185	2.7e-14	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27045 AT1G27045 AT1G27045 AT1G27045 AT1G27045
fragaria_vesca	FvH4_4g32060 FvH4_5g15520 FvH4_5g15520 FvH4_5g15520
malus_domestica	MD06G1032300.v1.1 MD06G1187600.v1.1 MD13G1030700.v1.1 MD13G1079500.v1.1 MD14G1194000.v1.1 MD16G1079400.v1.1
prunus_persica	Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.5G185900_v2.0.a1
pyrus_communis	pycom06g16680 pycom13g06920 pycom14g16140 pycom16g06860
rosa_chinensis	RchiOBHm_Chr4g0440751 RchiOBHm_Chr7g0180571
rosa_laevigata	RLG00000005254 RLG00000006157
rosa_multiflora	Rmu_sc0000424.1_g000003 Rmu_sc0005690.1_g000017 Rmu_sc0008018.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272780 Rroxscaffold_5G00381510
rosa_rugosa	Rorug04G0327600 Rorug06G0433800
rosa_samantha	Rh4AG379400 Rh4BG392200 Rh4BG392300 Rh4CG406900 Rh4CG407000 Rh4DG386100 Rh7AG035200 Rh7BG035100 Rh7CG036700 Rh7DG035400
rosa_wichuraiana	Rw4G032630 Rw4G032660 Rw7G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	376
AccI	GTMKAC	1 cut(s)	18
AccII	CGCG	2 cut(s)	414, 951
AclWI	GGATC	1 cut(s)	190
AcsI	RAATTY	3 cut(s)	112, 580, 916
AcuI	CTGAAG	1 cut(s)	672
AfiI	CCNNNNNNNGG	2 cut(s)	12, 505
AgsI	TTSAA	3 cut(s)	141, 803, 887
AjiI	CACGTC	1 cut(s)	319
AjnI	CCWGG	3 cut(s)	259, 778, 962
AluBI	AGCT	5 cut(s)	312, 436, 553, 677, 738
AluI	AGCT	5 cut(s)	312, 436, 553, 677, 738
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	2 cut(s)	652, 676
AlwI	GGATC	1 cut(s)	190
AoxI	GGCC	3 cut(s)	40, 525, 681
ApeKI	GCWGC	3 cut(s)	376, 553, 859
ApoI	RAATTY	3 cut(s)	112, 580, 916
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
Asp700I	GAANNNNTTC	1 cut(s)	165
AspLEI	GCGC	2 cut(s)	416, 953
AspS9I	GGNCC	2 cut(s)	364, 960
AsuC2I	CCSGG	2 cut(s)	382, 938
AsuHPI	GGTGA	1 cut(s)	794
AsuII	TTCGAA	1 cut(s)	159
AvaII	GGWCC	2 cut(s)	364, 960
BbsI	GAAGAC	1 cut(s)	431
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	3 cut(s)	388, 540, 846
BccI	CCATC	1 cut(s)	261
BceAI	ACGGC	1 cut(s)	37
BcgI	CGANNNNNNTGC	2 cut(s)	893, 927
BciT130I	CCWGG	3 cut(s)	261, 780, 964
BclI	TGATCA	1 cut(s)	286
BcnI	CCSGG	2 cut(s)	382, 938
BcoDI	GTCTC	2 cut(s)	652, 676
BfuAI	ACCTGC	1 cut(s)	376
BglII	AGATCT	1 cut(s)	697
BisI	GCNGC	7 cut(s)	25, 275, 377, 412, 554, 623, 860
BlsI	GCNGC	7 cut(s)	26, 276, 378, 413, 555, 624, 861
Bme1390I	CCNGG	5 cut(s)	261, 382, 780, 938, 964
Bme18I	GGWCC	2 cut(s)	364, 960
BmgBI	CACGTC	1 cut(s)	319
BmgT120I	GGNCC	2 cut(s)	364, 960
BmiI	GGNNCC	3 cut(s)	336, 401, 777
BmrFI	CCNGG	5 cut(s)	261, 382, 780, 938, 964
BmsI	GCATC	2 cut(s)	565, 742
BpiI	GAAGAC	1 cut(s)	431
Bpu14I	TTCGAA	1 cut(s)	159
BpuEI	CTTGAG	3 cut(s)	458, 464, 597
BpuMI	CCSGG	2 cut(s)	382, 938
Bsa29I	ATCGAT	1 cut(s)	146
BsaBI	GATNNNNATC	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	652
BsaJI	CCNNGG	5 cut(s)	260, 367, 380, 504, 528
BsaWI	WCCGGW	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 505
Bse1I	ACTGG	3 cut(s)	205, 295, 336
Bse8I	GATNNNNATC	1 cut(s)	246
BseBI	CCWGG	3 cut(s)	261, 780, 964
BseCI	ATCGAT	1 cut(s)	146
BseDI	CCNNGG	5 cut(s)	260, 367, 380, 504, 528
BseGI	GGATG	2 cut(s)	247, 757
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	2 cut(s)	12, 505
BseMII	CTCAG	5 cut(s)	35, 66, 558, 687, 744
BseNI	ACTGG	3 cut(s)	205, 295, 336
BseRI	GAGGAG	1 cut(s)	467
BseXI	GCAGC	3 cut(s)	388, 540, 846
Bsh1236I	CGCG	2 cut(s)	414, 951
Bsh1285I	CGRYCG	1 cut(s)	150
BshFI	GGCC	3 cut(s)	42, 527, 683
BshVI	ATCGAT	1 cut(s)	146
BsiEI	CGRYCG	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	5 cut(s)	6, 39, 338, 382, 938
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	12, 505
BsmAI	GTCTC	2 cut(s)	652, 676
BsmFI	GGGAC	1 cut(s)	242
BsmI	GAATGC	1 cut(s)	932
BsnI	GGCC	3 cut(s)	42, 527, 683
Bso31I	GGTCTC	1 cut(s)	652
Bsp119I	TTCGAA	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	6 cut(s)	143, 147, 182, 286, 697, 946
BspANI	GGCC	3 cut(s)	42, 527, 683
BspCNI	CTCAG	5 cut(s)	36, 67, 557, 686, 743
BspDI	ATCGAT	1 cut(s)	146
BspFNI	CGCG	2 cut(s)	414, 951
BspLI	GGNNCC	3 cut(s)	336, 401, 777
BspMI	ACCTGC	1 cut(s)	376
BspPI	GGATC	1 cut(s)	190
BspT104I	TTCGAA	1 cut(s)	159
BspTNI	GGTCTC	1 cut(s)	652
BsrI	ACTGG	3 cut(s)	205, 295, 336
BssECI	CCNNGG	5 cut(s)	260, 367, 380, 504, 528
BssMI	GATC	6 cut(s)	143, 147, 182, 286, 697, 946
BssT1I	CCWWGG	2 cut(s)	367, 504
Bst2UI	CCWGG	3 cut(s)	261, 780, 964
Bst4CI	ACNGT	3 cut(s)	538, 646, 813
Bst6I	CTCTTC	2 cut(s)	263, 769
BstBI	TTCGAA	1 cut(s)	159
BstC8I	GCNNGC	5 cut(s)	357, 374, 462, 857, 912
BstDEI	CTNAG	6 cut(s)	44, 75, 544, 673, 701, 730
BstENI	CCTNNNNNAGG	1 cut(s)	503
BstF5I	GGATG	2 cut(s)	247, 757
BstFNI	CGCG	2 cut(s)	414, 951
BstHHI	GCGC	2 cut(s)	416, 953
BstKTI	GATC	6 cut(s)	146, 150, 185, 289, 700, 949
BstMAI	GTCTC	2 cut(s)	652, 676
BstMBI	GATC	6 cut(s)	143, 147, 182, 286, 697, 946
BstMCI	CGRYCG	1 cut(s)	150
BstMWI	GCNNNNNNNGC	1 cut(s)	382
BstNI	CCWGG	3 cut(s)	261, 780, 964
BstSCI	CCNGG	5 cut(s)	259, 380, 778, 936, 962
BstUI	CGCG	2 cut(s)	414, 951
BstV1I	GCAGC	3 cut(s)	388, 540, 846
BstV2I	GAAGAC	1 cut(s)	431
BstX2I	RGATCY	1 cut(s)	697
BstXI	CCANNNNNNTGG	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	697
Bsu15I	ATCGAT	1 cut(s)	146
BsuRI	GGCC	3 cut(s)	42, 527, 683
BsuTUI	ATCGAT	1 cut(s)	146
BtrI	CACGTC	1 cut(s)	319
BtsCI	GGATG	2 cut(s)	247, 757
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	5 cut(s)	357, 374, 462, 857, 912
CfoI	GCGC	2 cut(s)	416, 953
Cfr13I	GGNCC	2 cut(s)	364, 960
ClaI	ATCGAT	1 cut(s)	146
CseI	GACGC	1 cut(s)	68
CviAII	CATG	1 cut(s)	921
DdeI	CTNAG	6 cut(s)	44, 75, 544, 673, 701, 730
DpnI	GATC	6 cut(s)	145, 149, 184, 288, 699, 948
DpnII	GATC	6 cut(s)	143, 147, 182, 286, 697, 946
Eam1104I	CTCTTC	2 cut(s)	263, 769
EarI	CTCTTC	2 cut(s)	263, 769
EciI	GGCGGA	2 cut(s)	42, 191
Eco130I	CCWWGG	2 cut(s)	367, 504
Eco31I	GGTCTC	1 cut(s)	652
Eco47I	GGWCC	2 cut(s)	364, 960
Eco57I	CTGAAG	1 cut(s)	672
EcoNI	CCTNNNNNAGG	1 cut(s)	503
EcoO109I	RGGNCCY	1 cut(s)	364
EcoRI	GAATTC	1 cut(s)	916
EcoRII	CCWGG	3 cut(s)	259, 778, 962
EcoT14I	CCWWGG	2 cut(s)	367, 504
ErhI	CCWWGG	2 cut(s)	367, 504
FaeI	CATG	1 cut(s)	924
FaiI	YATR	6 cut(s)	210, 397, 722, 795, 868, 922
FalI	AAGNNNNNCTT	2 cut(s)	339, 371
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	1 cut(s)	920
FauI	CCCGC	1 cut(s)	2
FbaI	TGATCA	1 cut(s)	286
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	7 cut(s)	25, 275, 377, 412, 554, 623, 860
FokI	GGATG	2 cut(s)	254, 764
Fsp4HI	GCNGC	7 cut(s)	25, 275, 377, 412, 554, 623, 860
GlaI	GCGC	2 cut(s)	415, 952
GluI	GCNGC	7 cut(s)	25, 275, 377, 412, 554, 623, 860
HaeIII	GGCC	3 cut(s)	42, 527, 683
HapII	CCGG	5 cut(s)	6, 39, 338, 382, 938
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	2 cut(s)	416, 953
Hin1II	CATG	1 cut(s)	924
Hin6I	GCGC	2 cut(s)	414, 951
HinP1I	GCGC	2 cut(s)	414, 951
HindIII	AAGCTT	1 cut(s)	310
HinfI	GANTC	3 cut(s)	86, 728, 785
HpaII	CCGG	5 cut(s)	6, 39, 338, 382, 938
HphI	GGTGA	1 cut(s)	794
Hpy166II	GTNNAC	2 cut(s)	19, 760
Hpy188I	TCNGA	8 cut(s)	60, 76, 547, 586, 595, 652, 817, 904
Hpy188III	TCNNGA	6 cut(s)	83, 141, 151, 302, 403, 614
Hpy8I	GTNNAC	2 cut(s)	19, 760
HpyAV	CCTTC	2 cut(s)	436, 647
HpyCH4III	ACNGT	3 cut(s)	538, 646, 813
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	5 cut(s)	359, 376, 460, 556, 755
HpyF10VI	GCNNNNNNNGC	1 cut(s)	382
HpyF3I	CTNAG	6 cut(s)	44, 75, 544, 673, 701, 730
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	1 cut(s)	924
HspAI	GCGC	2 cut(s)	414, 951
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	6 cut(s)	143, 147, 182, 286, 697, 946
LmnI	GCTCC	1 cut(s)	775
Lsp1109I	GCAGC	3 cut(s)	388, 540, 846
LweI	GCATC	2 cut(s)	565, 742
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	532
MalI	GATC	6 cut(s)	145, 149, 184, 288, 699, 948
MboI	GATC	6 cut(s)	143, 147, 182, 286, 697, 946
MfeI	CAATTG	1 cut(s)	633
MflI	RGATCY	1 cut(s)	697
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	5 cut(s)	112, 580, 633, 916, 925
MlyI	GAGTC	1 cut(s)	722
MroXI	GAANNNNTTC	1 cut(s)	165
MspA1I	CMGCKG	2 cut(s)	284, 677
MspI	CCGG	5 cut(s)	6, 39, 338, 382, 938
MspR9I	CCNGG	5 cut(s)	261, 382, 780, 938, 964
MunI	CAATTG	1 cut(s)	633
Mva1269I	GAATGC	1 cut(s)	932
MvaI	CCWGG	3 cut(s)	261, 780, 964
MvnI	CGCG	2 cut(s)	414, 951
MwoI	GCNNNNNNNGC	1 cut(s)	382
NciI	CCSGG	2 cut(s)	382, 938
NdeII	GATC	6 cut(s)	143, 147, 182, 286, 697, 946
NlaIII	CATG	1 cut(s)	924
NlaIV	GGNNCC	3 cut(s)	336, 401, 777
NmeAIII	GCCGAG	1 cut(s)	553
NspV	TTCGAA	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PctI	GAATGC	1 cut(s)	932
PdmI	GAANNNNTTC	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	86, 785
PflFI	GACNNNGTC	2 cut(s)	644, 731
PkrI	GCNGC	7 cut(s)	26, 276, 378, 413, 555, 624, 861
Ple19I	CGATCG	1 cut(s)	150
PleI	GAGTC	1 cut(s)	722
PpsI	GAGTC	1 cut(s)	722
PpuMI	RGGWCCY	1 cut(s)	364
Psp5II	RGGWCCY	1 cut(s)	364
Psp6I	CCWGG	3 cut(s)	259, 778, 962
PspGI	CCWGG	3 cut(s)	259, 778, 962
PspN4I	GGNNCC	3 cut(s)	336, 401, 777
PspPI	GGNCC	2 cut(s)	364, 960
PspPPI	RGGWCCY	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	697
PsyI	GACNNNGTC	2 cut(s)	644, 731
PvuI	CGATCG	1 cut(s)	150
PvuII	CAGCTG	1 cut(s)	677
SatI	GCNGC	7 cut(s)	25, 275, 377, 412, 554, 623, 860
Sau3AI	GATC	6 cut(s)	143, 147, 182, 286, 697, 946
Sau96I	GGNCC	2 cut(s)	364, 960
SchI	GAGTC	1 cut(s)	722
ScrFI	CCNGG	5 cut(s)	261, 382, 780, 938, 964
SduI	GDGCHC	1 cut(s)	216
SfaNI	GCATC	2 cut(s)	565, 742
SfuI	TTCGAA	1 cut(s)	159
SinI	GGWCC	2 cut(s)	364, 960
SmlI	CTYRAG	3 cut(s)	437, 479, 612
SmoI	CTYRAG	3 cut(s)	437, 479, 612
Sse9I	AATT	5 cut(s)	112, 580, 633, 916, 925
StyD4I	CCNGG	5 cut(s)	259, 380, 778, 936, 962
StyI	CCWWGG	2 cut(s)	367, 504
TaaI	ACNGT	3 cut(s)	538, 646, 813
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	4 cut(s)	146, 159, 185, 303
TasI	AATT	5 cut(s)	112, 580, 633, 916, 925
TauI	GCSGC	4 cut(s)	27, 277, 414, 625
TfiI	GAWTC	2 cut(s)	86, 785
TseI	GCWGC	3 cut(s)	376, 553, 859
TspDTI	ATGAA	2 cut(s)	846, 909
TspGWI	ACGGA	1 cut(s)	764
Tth111I	GACNNNGTC	2 cut(s)	644, 731
VpaK11BI	GGWCC	2 cut(s)	364, 960
XagI	CCTNNNNNAGG	1 cut(s)	503
XapI	RAATTY	3 cut(s)	112, 580, 916
XmiI	GTMKAC	1 cut(s)	18
XmnI	GAANNNNTTC	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.