Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001827

Physical Location & Seq

Genomic Coordinates Forward (+)

4451103 .. 4451417

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGTGGTGTGCAAGCAAGAGGATGCAAGTTCAGCGAAAAGCGATATTTTTGACTCGGATAGCCCGCATTGCACCGAAAACCATTCACCGTTGTTAGAGCCGGCGGATTCCTCTCATGTGTTTGAACCAGCTGATCAGTCCGATTTCTCGCAGGAGGAAGATGATGACCTCGGAAAGACGCTTTTGCCCCCACCACAGCCATACTTGTTAAAGCTTGAAGATTGCTGCTATGATAATTTACCCCCTCCAAATTCTAGTAATTTCGGGTACATCCCCTTGGAAGATCAGCAGCCCTTTTGTTTCTGGCCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

105

Amino Acids

11.73

Weight (kDa)

4.05

Isoelectric Point (pI)

80.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27045 AT1G27045 AT1G27045 AT1G27045 AT1G27045
fragaria_vesca	FvH4_4g32060 FvH4_5g15520 FvH4_5g15520 FvH4_5g15520
malus_domestica	MD06G1032300.v1.1 MD06G1187600.v1.1 MD13G1030700.v1.1 MD13G1079500.v1.1 MD14G1194000.v1.1 MD16G1079400.v1.1
prunus_persica	Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.5G185900_v2.0.a1
pyrus_communis	pycom06g16680 pycom13g06920 pycom14g16140 pycom16g06860
rosa_chinensis	RchiOBHm_Chr4g0440751 RchiOBHm_Chr7g0180571
rosa_laevigata	RLG00000005254 RLG00000006157
rosa_multiflora	Rmu_sc0000424.1_g000003 Rmu_sc0005690.1_g000017 Rmu_sc0008018.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272780 Rroxscaffold_5G00381510
rosa_rugosa	Rorug04G0327600 Rorug06G0433800
rosa_samantha	Rh4AG379400 Rh4BG392200 Rh4BG392300 Rh4CG406900 Rh4CG407000 Rh4DG386100 Rh7AG035200 Rh7BG035100 Rh7CG036700 Rh7DG035400
rosa_wichuraiana	Rw4G032630 Rw4G032660 Rw7G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	65, 104
AcsI	RAATTY	1 cut(s)	250
AfaI	GTAC	1 cut(s)	269
AgsI	TTSAA	2 cut(s)	125, 218
AluBI	AGCT	2 cut(s)	131, 214
AluI	AGCT	2 cut(s)	131, 214
AoxI	GGCC	1 cut(s)	305
ApeKI	GCWGC	2 cut(s)	225, 289
ApoI	RAATTY	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	78
BbvI	GCAGC	2 cut(s)	212, 301
BclI	TGATCA	1 cut(s)	133
BfaI	CTAG	1 cut(s)	255
BisI	GCNGC	2 cut(s)	226, 290
BlsI	GCNGC	2 cut(s)	227, 291
BmsI	GCATC	1 cut(s)	13
BsaJI	CCNNGG	2 cut(s)	169, 276
Bse118I	RCCGGY	1 cut(s)	100
Bse3DI	GCAATG	1 cut(s)	67
BseDI	CCNNGG	2 cut(s)	169, 276
BseGI	GGATG	2 cut(s)	28, 270
BseMI	GCAATG	1 cut(s)	67
BseXI	GCAGC	2 cut(s)	212, 301
BshFI	GGCC	1 cut(s)	307
BsiSI	CCGG	1 cut(s)	101
BsnI	GGCC	1 cut(s)	307
Bsp143I	GATC	2 cut(s)	133, 283
BspACI	CCGC	2 cut(s)	65, 104
BspANI	GGCC	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	67
BsrFI	RCCGGY	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	169, 276
BssMI	GATC	2 cut(s)	133, 283
BssT1I	CCWWGG	1 cut(s)	276
Bst4CI	ACNGT	1 cut(s)	90
BstC8I	GCNNGC	3 cut(s)	14, 65, 102
BstF5I	GGATG	2 cut(s)	28, 270
BstKTI	GATC	2 cut(s)	136, 286
BstMBI	GATC	2 cut(s)	133, 283
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 69
BstV1I	GCAGC	2 cut(s)	212, 301
BsuRI	GGCC	1 cut(s)	307
BtsCI	GGATG	2 cut(s)	28, 270
Cac8I	GCNNGC	3 cut(s)	14, 65, 102
Cfr10I	RCCGGY	1 cut(s)	100
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	7 cut(s)	63, 100, 131, 199, 214, 292, 307
CviKI_1	RGCY	7 cut(s)	63, 100, 131, 199, 214, 292, 307
CviQI	GTAC	1 cut(s)	268
DpnI	GATC	2 cut(s)	135, 285
DpnII	GATC	2 cut(s)	133, 283
EciI	GGCGGA	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	1 cut(s)	119
FaiI	YATR	3 cut(s)	117, 202, 231
FatI	CATG	1 cut(s)	115
FauI	CCCGC	1 cut(s)	72
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	226, 290
FokI	GGATG	2 cut(s)	35, 257
Fsp4HI	GCNGC	2 cut(s)	226, 290
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	2 cut(s)	226, 290
HaeIII	GGCC	1 cut(s)	307
HapII	CCGG	1 cut(s)	101
HgaI	GACGC	1 cut(s)	187
Hin1II	CATG	1 cut(s)	119
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	2 cut(s)	53, 107
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	1 cut(s)	78
Hpy188I	TCNGA	3 cut(s)	58, 142, 173
HpyCH4III	ACNGT	1 cut(s)	90
HpyCH4V	TGCA	3 cut(s)	12, 26, 72
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 69
Hsp92II	CATG	1 cut(s)	119
KroI	GCCGGC	1 cut(s)	100
KroNI	GCCGGC	1 cut(s)	102
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	133, 283
LpnPI	CCDG	4 cut(s)	114, 137, 141, 289
Lsp1109I	GCAGC	2 cut(s)	212, 301
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	255
MalI	GATC	2 cut(s)	135, 285
MboI	GATC	2 cut(s)	133, 283
MboII	GAAGA	3 cut(s)	170, 230, 293
MluCI	AATT	3 cut(s)	235, 250, 259
MlyI	GAGTC	1 cut(s)	47
MnlI	CCTC	5 cut(s)	13, 121, 148, 179, 255
MroNI	GCCGGC	1 cut(s)	100
MseI	TTAA	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	32, 69
NaeI	GCCGGC	1 cut(s)	102
NdeII	GATC	2 cut(s)	133, 283
NgoMIV	GCCGGC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	119
PdiI	GCCGGC	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	2 cut(s)	227, 291
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
PvuII	CAGCTG	1 cut(s)	131
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	2 cut(s)	226, 290
Sau3AI	GATC	2 cut(s)	133, 283
SchI	GAGTC	1 cut(s)	47
SetI	ASST	3 cut(s)	133, 171, 216
SfaNI	GCATC	1 cut(s)	13
Sse9I	AATT	3 cut(s)	235, 250, 259
SsiI	CCGC	2 cut(s)	65, 104
SspMI	CTAG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	90
TasI	AATT	3 cut(s)	235, 250, 259
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TseI	GCWGC	2 cut(s)	225, 289
XapI	RAATTY	1 cut(s)	250
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.