Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001827

Physical Location & Seq

Genomic Coordinates Forward (+)

4583529 .. 4585197

Gene Structure 1669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06920.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGACGAGTGGGAAACTCTACGGTTCTTCTTCTTCTGCGGACATGAAAGTAACTTTTCGAAACGAAAAGCGTCCTCGCTCTTCTGACGTTCTCGAGTCTCTCTGGATTCCCAATCCTTCCTCTTCTTTTTATGGCTCAAATTCAATGGTTAATTTTGAAAATGTAAGTGGAGGGGATTCATTGGATAGGCCATTCTTCCAACCTAAAGAAGAAAATGAGGATGAGGATTATGACGGTAGCTACCTTCATCAGCCCGGAAAGAAAAGGCGGCTCACGGCGAATCAAGTTCAGTTTCTGGAGAAGAATTTTGAGTCAGAAAACAAGCTTGAACCGGAGAGGAAGGTGCAACTTGCTAAAGAACTTGGCTTGCAGCCTCGCCAGGTAGCAATCTGGTTTCAAAACCGGCGGGTGCGGTATAAGAACAAGCAGTTGGAAAAGGACTATGATTCATTGAAAGCTAGCTATGATAAGCTCAAGGTTGATGCTGATAATCTCCTCAAGGAGAATGAAAGTTTGAAGAATGAGATTGATTCGATCAAGGATATTTTGCTTTCGAGAGAGAAAGGAAACCCAGGAAAGGGAGATTCGGATTCACAGGATGCGATCAATACATCGGATTTGGAGCCTCGGAATGCAATTCTGAATGCAGGTTCAGAAAATGTGACCAAAGTGGCAATGGTGGTGTGCAAGCAAGAGGATGCAAGTTCTGCAAAAAGCGATGTCTTTGACTCGGACAGCCCGCACTGCACTGAAAATCATTCGTCGTTGTTAGAGCCGGCGGATTCCTCCCATGTGTTTGAACCAGCTGATCAATCAGATTTCTCGCAGGATGAAGATGATGATTTGGGAAAGACCCTTCTGCCCCCACCACCACCACAGTTGTTAAAGCTTGAAGATTGCTGCTATGATTATATACCCCCTCCAAGCTCTAGTAATTTTGGGTACATCCCTTTGGACGATCAGGATCAGCAACCCTATTGTTTCTGGCCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

332

Amino Acids

37.46

Weight (kDa)

4.64

Isoelectric Point (pI)

57.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27045 AT1G27045 AT1G27045 AT1G27045 AT1G27045
fragaria_vesca	FvH4_4g32060 FvH4_5g15520 FvH4_5g15520 FvH4_5g15520
malus_domestica	MD06G1032300.v1.1 MD06G1187600.v1.1 MD13G1030700.v1.1 MD13G1079500.v1.1 MD14G1194000.v1.1 MD16G1079400.v1.1
prunus_persica	Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.5G185900_v2.0.a1
pyrus_communis	pycom06g16680 pycom13g06920 pycom14g16140 pycom16g06860
rosa_chinensis	RchiOBHm_Chr4g0440751 RchiOBHm_Chr7g0180571
rosa_laevigata	RLG00000005254 RLG00000006157
rosa_multiflora	Rmu_sc0000424.1_g000003 Rmu_sc0005690.1_g000017 Rmu_sc0008018.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272780 Rroxscaffold_5G00381510
rosa_rugosa	Rorug04G0327600 Rorug06G0433800
rosa_samantha	Rh4AG379400 Rh4BG392200 Rh4BG392300 Rh4CG406900 Rh4CG407000 Rh4DG386100 Rh7AG035200 Rh7BG035100 Rh7CG036700 Rh7DG035400
rosa_wichuraiana	Rw4G032630 Rw4G032660 Rw7G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	638
AciI	CCGC	6 cut(s)	38, 268, 406, 412, 740, 779
AclWI	GGATC	1 cut(s)	972
AcsI	RAATTY	2 cut(s)	139, 304
AfaI	GTAC	1 cut(s)	944
AfiI	CCNNNNNNNGG	2 cut(s)	577, 578
AgsI	TTSAA	8 cut(s)	144, 158, 329, 398, 454, 517, 800, 893
AjnI	CCWGG	2 cut(s)	378, 571
AjuI	GAANNNNNNNTTGG	2 cut(s)	413, 445
AluBI	AGCT	8 cut(s)	240, 325, 458, 462, 472, 806, 889, 927
AluI	AGCT	8 cut(s)	240, 325, 458, 462, 472, 806, 889, 927
Alw26I	GTCTC	1 cut(s)	102
AlwI	GGATC	1 cut(s)	972
AlwNI	CAGNNNCTG	1 cut(s)	295
Ama87I	CYCGRG	1 cut(s)	92
AoxI	GGCC	2 cut(s)	188, 986
ApeKI	GCWGC	2 cut(s)	370, 900
ApoI	RAATTY	2 cut(s)	139, 304
AsuC2I	CCSGG	1 cut(s)	255
AsuII	TTCGAA	1 cut(s)	58
AsuNHI	GCTAGC	1 cut(s)	458
AvaI	CYCGRG	1 cut(s)	92
BbvI	GCAGC	2 cut(s)	382, 887
BceAI	ACGGC	1 cut(s)	291
BciT130I	CCWGG	2 cut(s)	380, 573
BclI	TGATCA	1 cut(s)	808
BcnI	CCSGG	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	2 cut(s)	459, 930
BfuAI	ACCTGC	1 cut(s)	638
BisI	GCNGC	3 cut(s)	269, 371, 901
BlsI	GCNGC	3 cut(s)	270, 372, 902
Bme1390I	CCNGG	3 cut(s)	255, 380, 573
BmeT110I	CYCGRG	1 cut(s)	92
BmiI	GGNNCC	1 cut(s)	624
BmrFI	CCNGG	3 cut(s)	255, 380, 573
BmsI	GCATC	3 cut(s)	472, 589, 688
BmtI	GCTAGC	1 cut(s)	462
BpmI	CTGGAG	1 cut(s)	317
Bpu14I	TTCGAA	1 cut(s)	58
BpuEI	CTTGAG	2 cut(s)	458, 482
BpuMI	CCSGG	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	963
BsaJI	CCNNGG	2 cut(s)	571, 626
BsaWI	WCCGGW	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	2 cut(s)	577, 578
Bse118I	RCCGGY	2 cut(s)	402, 775
Bse3DI	GCAATG	1 cut(s)	681
Bse8I	GATNNNNATC	1 cut(s)	963
BseBI	CCWGG	2 cut(s)	380, 573
BseDI	CCNNGG	2 cut(s)	571, 626
BseGI	GGATG	5 cut(s)	226, 604, 703, 835, 945
BseJI	GATNNNNATC	1 cut(s)	963
BseLI	CCNNNNNNNGG	2 cut(s)	577, 578
BseMI	GCAATG	1 cut(s)	681
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	2 cut(s)	382, 887
BsgI	GTGCAG	1 cut(s)	730
BshFI	GGCC	2 cut(s)	190, 988
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	4 cut(s)	255, 332, 403, 776
BslI	CCNNNNNNNGG	2 cut(s)	577, 578
BsmAI	GTCTC	1 cut(s)	102
BsmI	GAATGC	2 cut(s)	637, 649
BsnI	GGCC	2 cut(s)	190, 988
BsoBI	CYCGRG	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	58
Bsp143I	GATC	5 cut(s)	534, 603, 808, 958, 964
BspACI	CCGC	6 cut(s)	38, 268, 406, 412, 740, 779
BspANI	GGCC	2 cut(s)	190, 988
BspLI	GGNNCC	1 cut(s)	624
BspMI	ACCTGC	1 cut(s)	638
BspOI	GCTAGC	1 cut(s)	462
BspPI	GGATC	1 cut(s)	972
BspQI	GCTCTTC	1 cut(s)	85
BspT104I	TTCGAA	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	681
BsrFI	RCCGGY	2 cut(s)	402, 775
BssAI	RCCGGY	2 cut(s)	402, 775
BssECI	CCNNGG	2 cut(s)	571, 626
BssMI	GATC	5 cut(s)	534, 603, 808, 958, 964
Bst2UI	CCWGG	2 cut(s)	380, 573
Bst4CI	ACNGT	3 cut(s)	23, 236, 879
Bst6I	CTCTTC	2 cut(s)	85, 127
BstAPI	GCANNNNNTGC	1 cut(s)	707
BstBI	TTCGAA	1 cut(s)	58
BstC8I	GCNNGC	5 cut(s)	368, 460, 689, 740, 777
BstF5I	GGATG	5 cut(s)	226, 604, 703, 835, 945
BstKTI	GATC	5 cut(s)	537, 606, 811, 961, 967
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	5 cut(s)	534, 603, 808, 958, 964
BstMWI	GCNNNNNNNGC	2 cut(s)	707, 744
BstNI	CCWGG	2 cut(s)	380, 573
BstSCI	CCNGG	3 cut(s)	253, 378, 571
BstV1I	GCAGC	2 cut(s)	382, 887
BsuRI	GGCC	2 cut(s)	190, 988
BtgZI	GCGATG	1 cut(s)	732
BtsCI	GGATG	5 cut(s)	226, 604, 703, 835, 945
BtsI	GCAGTG	1 cut(s)	742
BtsIMutI	CAGTG	2 cut(s)	742, 747
BveI	ACCTGC	1 cut(s)	638
Cac8I	GCNNGC	5 cut(s)	368, 460, 689, 740, 777
CaiI	CAGNNNCTG	1 cut(s)	295
Cfr10I	RCCGGY	2 cut(s)	402, 775
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	943
CspCI	CAANNNNNGTGG	2 cut(s)	861, 896
CviAII	CATG	2 cut(s)	43, 791
CviQI	GTAC	1 cut(s)	943
DpnI	GATC	5 cut(s)	536, 605, 810, 960, 966
DpnII	GATC	5 cut(s)	534, 603, 808, 958, 964
Eam1104I	CTCTTC	2 cut(s)	85, 127
EarI	CTCTTC	2 cut(s)	85, 127
EciI	GGCGGA	1 cut(s)	794
Eco88I	CYCGRG	1 cut(s)	92
EcoRII	CCWGG	2 cut(s)	378, 571
FaeI	CATG	2 cut(s)	46, 794
FatI	CATG	2 cut(s)	42, 790
FauI	CCCGC	2 cut(s)	399, 747
FbaI	TGATCA	1 cut(s)	808
Fnu4HI	GCNGC	3 cut(s)	269, 371, 901
FokI	GGATG	5 cut(s)	233, 611, 710, 842, 932
Fsp4HI	GCNGC	3 cut(s)	269, 371, 901
FspBI	CTAG	2 cut(s)	459, 930
GluI	GCNGC	3 cut(s)	269, 371, 901
GsuI	CTGGAG	1 cut(s)	317
HaeIII	GGCC	2 cut(s)	190, 988
HapII	CCGG	4 cut(s)	255, 332, 403, 776
HgaI	GACGC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	46, 794
HindIII	AAGCTT	2 cut(s)	323, 887
HpaII	CCGG	4 cut(s)	255, 332, 403, 776
Hpy188I	TCNGA	9 cut(s)	85, 316, 589, 616, 630, 642, 655, 733, 817
Hpy188III	TCNNGA	5 cut(s)	92, 103, 296, 555, 962
Hpy99I	CGWCG	1 cut(s)	766
HpyAV	CCTTC	4 cut(s)	126, 254, 334, 866
HpyCH4III	ACNGT	3 cut(s)	23, 236, 879
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	8 cut(s)	346, 370, 635, 647, 687, 701, 710, 747
HpyF10VI	GCNNNNNNNGC	2 cut(s)	707, 744
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	46, 794
KroI	GCCGGC	1 cut(s)	775
KroNI	GCCGGC	1 cut(s)	777
Ksp22I	TGATCA	1 cut(s)	808
Kzo9I	GATC	5 cut(s)	534, 603, 808, 958, 964
LguI	GCTCTTC	1 cut(s)	85
LmnI	GCTCC	1 cut(s)	622
Lsp1109I	GCAGC	2 cut(s)	382, 887
LweI	GCATC	3 cut(s)	472, 589, 688
MaeI	CTAG	2 cut(s)	459, 930
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	2 cut(s)	49, 661
MalI	GATC	5 cut(s)	536, 605, 810, 960, 966
MboI	GATC	5 cut(s)	534, 603, 808, 958, 964
MluCI	AATT	5 cut(s)	139, 151, 304, 636, 934
MlyI	GAGTC	3 cut(s)	104, 320, 722
MmeI	TCCRAC	2 cut(s)	223, 411
MroNI	GCCGGC	1 cut(s)	775
MseI	TTAA	2 cut(s)	150, 884
MspA1I	CMGCKG	1 cut(s)	806
MspI	CCGG	4 cut(s)	255, 332, 403, 776
MspR9I	CCNGG	3 cut(s)	255, 380, 573
Mva1269I	GAATGC	2 cut(s)	637, 649
MvaI	CCWGG	2 cut(s)	380, 573
MwoI	GCNNNNNNNGC	2 cut(s)	707, 744
NaeI	GCCGGC	1 cut(s)	777
NciI	CCSGG	1 cut(s)	255
NdeII	GATC	5 cut(s)	534, 603, 808, 958, 964
NgoMIV	GCCGGC	1 cut(s)	775
NheI	GCTAGC	1 cut(s)	458
NlaIII	CATG	2 cut(s)	46, 794
NlaIV	GGNNCC	1 cut(s)	624
NmuCI	GTSAC	1 cut(s)	661
NspV	TTCGAA	1 cut(s)	58
PaeR7I	CTCGAG	1 cut(s)	92
PciSI	GCTCTTC	1 cut(s)	85
PctI	GAATGC	2 cut(s)	637, 649
PdiI	GCCGGC	1 cut(s)	777
PfeI	GAWTC	8 cut(s)	106, 176, 280, 446, 530, 584, 590, 782
PkrI	GCNGC	3 cut(s)	270, 372, 902
PleI	GAGTC	3 cut(s)	103, 319, 722
PpsI	GAGTC	3 cut(s)	103, 319, 722
Psp6I	CCWGG	2 cut(s)	378, 571
PspGI	CCWGG	2 cut(s)	378, 571
PspN4I	GGNNCC	1 cut(s)	624
PstNI	CAGNNNCTG	1 cut(s)	295
PvuII	CAGCTG	1 cut(s)	806
RsaI	GTAC	1 cut(s)	944
RsaNI	GTAC	1 cut(s)	943
SapI	GCTCTTC	1 cut(s)	85
SaqAI	TTAA	2 cut(s)	150, 884
SatI	GCNGC	3 cut(s)	269, 371, 901
Sau3AI	GATC	5 cut(s)	534, 603, 808, 958, 964
SchI	GAGTC	3 cut(s)	104, 320, 722
ScrFI	CCNGG	3 cut(s)	255, 380, 573
SfaNI	GCATC	3 cut(s)	472, 589, 688
Sfr274I	CTCGAG	1 cut(s)	92
SfuI	TTCGAA	1 cut(s)	58
SlaI	CTCGAG	1 cut(s)	92
SmlI	CTYRAG	3 cut(s)	92, 473, 497
SmoI	CTYRAG	3 cut(s)	92, 473, 497
Sse9I	AATT	5 cut(s)	139, 151, 304, 636, 934
SsiI	CCGC	6 cut(s)	38, 268, 406, 412, 740, 779
SspMI	CTAG	2 cut(s)	459, 930
StyD4I	CCNGG	3 cut(s)	253, 378, 571
TaaI	ACNGT	3 cut(s)	23, 236, 879
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	4 cut(s)	58, 93, 533, 554
TasI	AATT	5 cut(s)	139, 151, 304, 636, 934
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	8 cut(s)	106, 176, 280, 446, 530, 584, 590, 782
Tru1I	TTAA	2 cut(s)	150, 884
Tru9I	TTAA	2 cut(s)	150, 884
TscAI	CASTG	2 cut(s)	749, 754
TseFI	GTSAC	1 cut(s)	661
TseI	GCWGC	2 cut(s)	370, 900
Tsp45I	GTSAC	1 cut(s)	661
TspDTI	ATGAA	6 cut(s)	59, 168, 236, 438, 522, 846
TspRI	CASTG	2 cut(s)	749, 754
XapI	RAATTY	2 cut(s)	139, 304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	673
XhoI	CTCGAG	1 cut(s)	92
XspI	CTAG	2 cut(s)	459, 930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.