Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001827

Physical Location & Seq

Genomic Coordinates Forward (+)

5572238 .. 5574647

Gene Structure 2410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1079400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGACGAGTGGGAAACTCTACGGTTCTTCTGCGGACATGAAAGTAATTTTTCAAAACGAAAAGCGACCTCGCTCTTCTGACGTTCTCGAGTCTCTCTGGATTCCCACTCCTTCCTCTTCTTTTCATGGTTCAAATTCAATGGTTAATTTTGAAAATGTAAGTGAAGGGGACTCCTTGGATAGGCCTTTCTTCCAACCCAAACAAGAAAACGAGGATGAGGATTATTACGGTGGCTACCTTCATCAACCCGGAAAGAAAAGGCGGCTCACGGCGAATCAAGTTCAGTTTCTGGAGAAGAAATTCGAGTTAGAAAACAAGCTTGAACCTGAGAGGAAGGTGCAACTTGCTAACGAACTTGGCTTGCAGCCTCGCCAGGTAGCAATTTGGTTTCAAAACCGCCGGGCGCGGTATAAAAACAAGCGGTTGGAAAAGGATTATGATTCATTGAAAGCCAGCTATGATAAGCTCAAGGTTGATGTTGATAATCTCCTCAAGGAGAATGGAAGTTTGAAGAATGAGGTTGATTCCCTCAAGGACGTTTTGCTTTCGAGAGAGAAAGGAAAGCCTGACGGCGGAAATTCGGATTCACACAATGCAATCGATTCATCGGATTTGGTGCCCCGGAGTGCAATTCCGAATGAAGATTCTGAAACTGTGACCAAGGGGGCAATGGTGGTGTGCAAGCAAGAGGATGCAAGTTCTGCGAAAAGCGATGTTTTCGACTCGGATAGCCCGCATTGCACTGAAAACCATTCACCGTTGTTAGAGCCGGCGGATTCCTCTCATGTGTTTGAACCAGCTGATCAGTCCGATTTCTCGCAGGATGAAGATGATGATCTCGGAAAGACCCTCTTGCCCCCACCACAGCCGTACTTGTTAAAGCTTGAAGATTGCTGCTATGATAATTTACCCCCTCCAAATTCTAGTAATTTCGGGTACATCCCTTTGGAAGATCAGCAGCCCTTTTGTTTCTGGCCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

328

Amino Acids

37.07

Weight (kDa)

4.78

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	85 - 139	1.2e-16	Homeodomain
HALZ	PF02183	140 - 181	6.4e-15	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27045 AT1G27045 AT1G27045 AT1G27045 AT1G27045
fragaria_vesca	FvH4_4g32060 FvH4_5g15520 FvH4_5g15520 FvH4_5g15520
malus_domestica	MD06G1032300.v1.1 MD06G1187600.v1.1 MD13G1030700.v1.1 MD13G1079500.v1.1 MD14G1194000.v1.1 MD16G1079400.v1.1
prunus_persica	Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.5G185900_v2.0.a1
pyrus_communis	pycom06g16680 pycom13g06920 pycom14g16140 pycom16g06860
rosa_chinensis	RchiOBHm_Chr4g0440751 RchiOBHm_Chr7g0180571
rosa_laevigata	RLG00000005254 RLG00000006157
rosa_multiflora	Rmu_sc0000424.1_g000003 Rmu_sc0005690.1_g000017 Rmu_sc0008018.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272780 Rroxscaffold_5G00381510
rosa_rugosa	Rorug04G0327600 Rorug06G0433800
rosa_samantha	Rh4AG379400 Rh4BG392200 Rh4BG392300 Rh4CG406900 Rh4CG407000 Rh4DG386100 Rh7AG035200 Rh7BG035100 Rh7CG036700 Rh7DG035400
rosa_wichuraiana	Rw4G032630 Rw4G032660 Rw7G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	616
AccII	CGCG	1 cut(s)	406
AciI	CCGC	8 cut(s)	32, 262, 397, 406, 421, 573, 734, 773
AcsI	RAATTY	4 cut(s)	133, 299, 577, 919
AfaI	GTAC	2 cut(s)	872, 938
AfiI	CCNNNNNNNGG	2 cut(s)	180, 572
AjnI	CCWGG	1 cut(s)	372
AluBI	AGCT	5 cut(s)	319, 456, 466, 800, 883
AluI	AGCT	5 cut(s)	319, 456, 466, 800, 883
Alw26I	GTCTC	1 cut(s)	96
AlwNI	CAGNNNCTG	1 cut(s)	289
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	2 cut(s)	182, 974
ApeKI	GCWGC	3 cut(s)	364, 894, 958
ApoI	RAATTY	4 cut(s)	133, 299, 577, 919
Asp700I	GAANNNNTTC	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	406
AsuC2I	CCSGG	3 cut(s)	249, 401, 622
AsuHPI	GGTGA	1 cut(s)	747
AvaI	CYCGRG	1 cut(s)	86
BaeGI	GKGCMC	1 cut(s)	621
BanI	GGYRCC	1 cut(s)	616
BbvI	GCAGC	3 cut(s)	376, 881, 970
BceAI	ACGGC	3 cut(s)	285, 586, 853
BciT130I	CCWGG	1 cut(s)	374
BclI	TGATCA	1 cut(s)	802
BcnI	CCSGG	3 cut(s)	249, 401, 622
BcoDI	GTCTC	1 cut(s)	96
BfaI	CTAG	1 cut(s)	924
BisI	GCNGC	4 cut(s)	263, 365, 895, 959
BlsI	GCNGC	4 cut(s)	264, 366, 896, 960
Bme1390I	CCNGG	4 cut(s)	249, 374, 401, 622
BmeT110I	CYCGRG	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	618
BmrFI	CCNGG	4 cut(s)	249, 374, 401, 622
BmsI	GCATC	1 cut(s)	682
BpmI	CTGGAG	1 cut(s)	311
BpuEI	CTTGAG	3 cut(s)	452, 476, 515
BpuMI	CCSGG	3 cut(s)	249, 401, 622
Bsa29I	ATCGAT	1 cut(s)	600
BsaBI	GATNNNNATC	1 cut(s)	834
BsaJI	CCNNGG	3 cut(s)	174, 620, 660
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 572
Bse118I	RCCGGY	1 cut(s)	769
Bse3DI	GCAATG	2 cut(s)	675, 736
Bse8I	GATNNNNATC	1 cut(s)	834
BseBI	CCWGG	1 cut(s)	374
BseCI	ATCGAT	1 cut(s)	600
BseDI	CCNNGG	3 cut(s)	174, 620, 660
BseGI	GGATG	4 cut(s)	220, 697, 829, 939
BseJI	GATNNNNATC	1 cut(s)	834
BseLI	CCNNNNNNNGG	2 cut(s)	180, 572
BseMI	GCAATG	2 cut(s)	675, 736
BseMII	CTCAG	1 cut(s)	318
BseRI	GAGGAG	1 cut(s)	479
BseSI	GKGCMC	1 cut(s)	621
BseXI	GCAGC	3 cut(s)	376, 881, 970
Bsh1236I	CGCG	1 cut(s)	406
BshFI	GGCC	2 cut(s)	184, 976
BshNI	GGYRCC	1 cut(s)	616
BshVI	ATCGAT	1 cut(s)	600
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	4 cut(s)	249, 400, 622, 770
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	2 cut(s)	180, 572
BsmAI	GTCTC	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	2 cut(s)	184, 976
BsoBI	CYCGRG	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp143I	GATC	3 cut(s)	802, 835, 952
BspACI	CCGC	8 cut(s)	32, 262, 397, 406, 421, 573, 734, 773
BspANI	GGCC	2 cut(s)	184, 976
BspCNI	CTCAG	1 cut(s)	319
BspDI	ATCGAT	1 cut(s)	600
BspFNI	CGCG	1 cut(s)	406
BspLI	GGNNCC	1 cut(s)	618
BspQI	GCTCTTC	1 cut(s)	79
BspT107I	GGYRCC	1 cut(s)	616
BsrDI	GCAATG	2 cut(s)	675, 736
BsrFI	RCCGGY	1 cut(s)	769
BssAI	RCCGGY	1 cut(s)	769
BssECI	CCNNGG	3 cut(s)	174, 620, 660
BssMI	GATC	3 cut(s)	802, 835, 952
BssT1I	CCWWGG	2 cut(s)	174, 660
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	4 cut(s)	23, 230, 655, 759
Bst6I	CTCTTC	2 cut(s)	79, 121
BstAPI	GCANNNNNTGC	1 cut(s)	701
BstC8I	GCNNGC	5 cut(s)	362, 454, 683, 734, 771
BstDEI	CTNAG	1 cut(s)	327
BstENI	CCTNNNNNAGG	1 cut(s)	178
BstF5I	GGATG	4 cut(s)	220, 697, 829, 939
BstFNI	CGCG	1 cut(s)	406
BstHHI	GCGC	1 cut(s)	406
BstKTI	GATC	3 cut(s)	805, 838, 955
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	3 cut(s)	802, 835, 952
BstMWI	GCNNNNNNNGC	2 cut(s)	701, 738
BstNI	CCWGG	1 cut(s)	374
BstSCI	CCNGG	4 cut(s)	247, 372, 399, 620
BstSLI	GKGCMC	1 cut(s)	621
BstUI	CGCG	1 cut(s)	406
BstV1I	GCAGC	3 cut(s)	376, 881, 970
Bsu15I	ATCGAT	1 cut(s)	600
BsuRI	GGCC	2 cut(s)	184, 976
BsuTUI	ATCGAT	1 cut(s)	600
BtgZI	GCGATG	1 cut(s)	726
BtsCI	GGATG	4 cut(s)	220, 697, 829, 939
BtsIMutI	CAGTG	1 cut(s)	741
Cac8I	GCNNGC	5 cut(s)	362, 454, 683, 734, 771
CaiI	CAGNNNCTG	1 cut(s)	289
CfoI	GCGC	1 cut(s)	406
Cfr10I	RCCGGY	1 cut(s)	769
ClaI	ATCGAT	1 cut(s)	600
Csp6I	GTAC	2 cut(s)	871, 937
CviAII	CATG	3 cut(s)	37, 125, 785
CviQI	GTAC	2 cut(s)	871, 937
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	3 cut(s)	804, 837, 954
DpnII	GATC	3 cut(s)	802, 835, 952
Eam1104I	CTCTTC	2 cut(s)	79, 121
EarI	CTCTTC	2 cut(s)	79, 121
EciI	GGCGGA	2 cut(s)	588, 788
Eco130I	CCWWGG	2 cut(s)	174, 660
Eco147I	AGGCCT	1 cut(s)	184
Eco88I	CYCGRG	1 cut(s)	86
EcoNI	CCTNNNNNAGG	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	372
EcoT14I	CCWWGG	2 cut(s)	174, 660
ErhI	CCWWGG	2 cut(s)	174, 660
FaeI	CATG	3 cut(s)	40, 128, 788
FaiI	YATR	7 cut(s)	38, 126, 411, 438, 459, 786, 900
FalI	AAGNNNNNCTT	2 cut(s)	836, 868
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	3 cut(s)	36, 124, 784
FauI	CCCGC	1 cut(s)	741
FbaI	TGATCA	1 cut(s)	802
Fnu4HI	GCNGC	4 cut(s)	263, 365, 895, 959
FokI	GGATG	4 cut(s)	227, 704, 836, 926
Fsp4HI	GCNGC	4 cut(s)	263, 365, 895, 959
FspBI	CTAG	1 cut(s)	924
GlaI	GCGC	1 cut(s)	405
GluI	GCNGC	4 cut(s)	263, 365, 895, 959
GsuI	CTGGAG	1 cut(s)	311
HaeIII	GGCC	2 cut(s)	184, 976
HapII	CCGG	4 cut(s)	249, 400, 622, 770
HhaI	GCGC	1 cut(s)	406
Hin1II	CATG	3 cut(s)	40, 128, 788
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HindIII	AAGCTT	2 cut(s)	317, 881
HpaII	CCGG	4 cut(s)	249, 400, 622, 770
HphI	GGTGA	1 cut(s)	747
Hpy188I	TCNGA	8 cut(s)	79, 583, 610, 636, 649, 727, 811, 842
Hpy188III	TCNNGA	4 cut(s)	86, 97, 290, 549
HpyAV	CCTTC	4 cut(s)	120, 158, 248, 328
HpyCH4III	ACNGT	4 cut(s)	23, 230, 655, 759
HpyCH4IV	ACGT	2 cut(s)	81, 537
HpyCH4V	TGCA	7 cut(s)	340, 364, 596, 629, 681, 695, 741
HpyF10VI	GCNNNNNNNGC	2 cut(s)	701, 738
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	2 cut(s)	81, 537
Hsp92II	CATG	3 cut(s)	40, 128, 788
HspAI	GCGC	1 cut(s)	404
KroI	GCCGGC	1 cut(s)	769
KroNI	GCCGGC	1 cut(s)	771
Ksp22I	TGATCA	1 cut(s)	802
Kzo9I	GATC	3 cut(s)	802, 835, 952
LguI	GCTCTTC	1 cut(s)	79
Lsp1109I	GCAGC	3 cut(s)	376, 881, 970
LweI	GCATC	1 cut(s)	682
MaeI	CTAG	1 cut(s)	924
MaeII	ACGT	2 cut(s)	81, 537
MaeIII	GTNAC	1 cut(s)	655
MalI	GATC	3 cut(s)	804, 837, 954
MboI	GATC	3 cut(s)	802, 835, 952
MhlI	GDGCHC	1 cut(s)	621
MlyI	GAGTC	3 cut(s)	98, 164, 716
MmeI	TCCRAC	2 cut(s)	217, 405
MroNI	GCCGGC	1 cut(s)	769
MroXI	GAANNNNTTC	1 cut(s)	299
MseI	TTAA	2 cut(s)	144, 878
MspA1I	CMGCKG	1 cut(s)	800
MspI	CCGG	4 cut(s)	249, 400, 622, 770
MspR9I	CCNGG	4 cut(s)	249, 374, 401, 622
MvaI	CCWGG	1 cut(s)	374
MvnI	CGCG	1 cut(s)	406
MwoI	GCNNNNNNNGC	2 cut(s)	701, 738
NaeI	GCCGGC	1 cut(s)	771
NciI	CCSGG	3 cut(s)	249, 401, 622
NdeII	GATC	3 cut(s)	802, 835, 952
NgoMIV	GCCGGC	1 cut(s)	769
NlaIII	CATG	3 cut(s)	40, 128, 788
NlaIV	GGNNCC	1 cut(s)	618
NmuCI	GTSAC	1 cut(s)	655
PaeR7I	CTCGAG	1 cut(s)	86
PceI	AGGCCT	1 cut(s)	184
PciSI	GCTCTTC	1 cut(s)	79
PdiI	GCCGGC	1 cut(s)	771
PdmI	GAANNNNTTC	1 cut(s)	299
PfeI	GAWTC	8 cut(s)	100, 274, 440, 524, 584, 602, 644, 776
PkrI	GCNGC	4 cut(s)	264, 366, 896, 960
PleI	GAGTC	3 cut(s)	97, 164, 716
PpsI	GAGTC	3 cut(s)	97, 164, 716
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	618
PstNI	CAGNNNCTG	1 cut(s)	289
PvuII	CAGCTG	1 cut(s)	800
RsaI	GTAC	2 cut(s)	872, 938
RsaNI	GTAC	2 cut(s)	871, 937
SapI	GCTCTTC	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	144, 878
SatI	GCNGC	4 cut(s)	263, 365, 895, 959
Sau3AI	GATC	3 cut(s)	802, 835, 952
SchI	GAGTC	3 cut(s)	98, 164, 716
ScrFI	CCNGG	4 cut(s)	249, 374, 401, 622
SduI	GDGCHC	1 cut(s)	621
SfaNI	GCATC	1 cut(s)	682
Sfr274I	CTCGAG	1 cut(s)	86
SlaI	CTCGAG	1 cut(s)	86
SmlI	CTYRAG	4 cut(s)	86, 467, 491, 530
SmoI	CTYRAG	4 cut(s)	86, 467, 491, 530
SseBI	AGGCCT	1 cut(s)	184
SsiI	CCGC	8 cut(s)	32, 262, 397, 406, 421, 573, 734, 773
SspMI	CTAG	1 cut(s)	924
StuI	AGGCCT	1 cut(s)	184
StyD4I	CCNGG	4 cut(s)	247, 372, 399, 620
StyI	CCWWGG	2 cut(s)	174, 660
TaaI	ACNGT	4 cut(s)	23, 230, 655, 759
TaiI	ACGT	2 cut(s)	84, 540
TaqI	TCGA	5 cut(s)	87, 303, 548, 600, 720
TauI	GCSGC	1 cut(s)	265
TfiI	GAWTC	8 cut(s)	100, 274, 440, 524, 584, 602, 644, 776
Tru1I	TTAA	2 cut(s)	144, 878
Tru9I	TTAA	2 cut(s)	144, 878
TscAI	CASTG	1 cut(s)	748
TseFI	GTSAC	1 cut(s)	655
TseI	GCWGC	3 cut(s)	364, 894, 958
Tsp45I	GTSAC	1 cut(s)	655
TspDTI	ATGAA	7 cut(s)	53, 113, 230, 432, 594, 654, 840
TspRI	CASTG	1 cut(s)	748
XagI	CCTNNNNNAGG	1 cut(s)	178
XapI	RAATTY	4 cut(s)	133, 299, 577, 919
XcmI	CCANNNNNNNNNTGG	1 cut(s)	667
XhoI	CTCGAG	1 cut(s)	86
XmnI	GAANNNNTTC	1 cut(s)	299
XspI	CTAG	1 cut(s)	924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.