Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001827

Physical Location & Seq

Genomic Coordinates Forward (+)

54468291 .. 54469478

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG392200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGTGGGTGGCAAACGATATGGTGCTTCTTCGGATATGAATGCTGTTTTTCAACACGAAAGGCCTCCTTGCTCTTCTGACGTTCTCGAGTCTCTTTGGATTCCCACTTCATCTTCATCTTTTCATGGTTCAAATTCAATGGTCAATTTTGAAAATGTTAGCGGTGGAGACTCCATGGACAAGTCACTCTTTCAACCTATTGATAAAGAAGAAAATGGGGATGACGATTACGAAGGTAGCCTGCTGCATCAACCCGGAAAGAAAAGACGACTTACAGTTGATCAAGTTCAGTTTCTAGAGAAGAATTTTGAGCTAGAAAACAAGCTTGAACCAGATAGGAAAGTCCAACTTGCCAAAGAACTTAGCTTGGAGCCTCGCCAAGTTGCAATTTGGTTTCAAAACCGGCGGGCTCGGTTTAAGACCAAGCAGCTCGAAAAGGACTATGACTCATTGAGAGCTAGCTATGACAAGCTCAAGGCTGATCATGATAAGCTACTAAAGCAGAATGGAAATTTGAAGAATGAGGTAAATAGGCAGTATTGTTTTTACACTAGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

186

Amino Acids

21.49

Weight (kDa)

6.53

Isoelectric Point (pI)

31.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	87 - 140	3.4e-16	Homeodomain
HALZ	PF02183	142 - 177	3e-14	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27045 AT1G27045 AT1G27045 AT1G27045 AT1G27045
fragaria_vesca	FvH4_4g32060 FvH4_5g15520 FvH4_5g15520 FvH4_5g15520
malus_domestica	MD06G1032300.v1.1 MD06G1187600.v1.1 MD13G1030700.v1.1 MD13G1079500.v1.1 MD14G1194000.v1.1 MD16G1079400.v1.1
prunus_persica	Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.5G185900_v2.0.a1
pyrus_communis	pycom06g16680 pycom13g06920 pycom14g16140 pycom16g06860
rosa_chinensis	RchiOBHm_Chr4g0440751 RchiOBHm_Chr7g0180571
rosa_laevigata	RLG00000005254 RLG00000006157
rosa_multiflora	Rmu_sc0000424.1_g000003 Rmu_sc0005690.1_g000017 Rmu_sc0008018.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272780 Rroxscaffold_5G00381510
rosa_rugosa	Rorug04G0327600 Rorug06G0433800
rosa_samantha	Rh4AG379400 Rh4BG392200 Rh4BG392300 Rh4CG406900 Rh4CG407000 Rh4DG386100 Rh7AG035200 Rh7BG035100 Rh7CG036700 Rh7DG035400
rosa_wichuraiana	Rw4G032630 Rw4G032660 Rw7G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	162, 406
AcsI	RAATTY	3 cut(s)	133, 304, 511
AgsI	TTSAA	8 cut(s)	53, 132, 138, 152, 194, 329, 398, 517
AhlI	ACTAGT	1 cut(s)	551
AluBI	AGCT	8 cut(s)	313, 325, 366, 430, 458, 462, 472, 493
AluI	AGCT	8 cut(s)	313, 325, 366, 430, 458, 462, 472, 493
Alw26I	GTCTC	2 cut(s)	96, 162
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	1 cut(s)	62
ApeKI	GCWGC	2 cut(s)	244, 427
ApoI	RAATTY	3 cut(s)	133, 304, 511
AsuC2I	CCSGG	1 cut(s)	255
AsuNHI	GCTAGC	1 cut(s)	458
AvaI	CYCGRG	1 cut(s)	86
BanII	GRGCYC	1 cut(s)	412
BbvI	GCAGC	2 cut(s)	231, 439
BclI	TGATCA	2 cut(s)	280, 481
BcnI	CCSGG	1 cut(s)	255
BcoDI	GTCTC	2 cut(s)	96, 162
BcuI	ACTAGT	1 cut(s)	551
BfaI	CTAG	4 cut(s)	296, 314, 459, 552
BisI	GCNGC	2 cut(s)	245, 428
BlsI	GCNGC	2 cut(s)	246, 429
Bme1390I	CCNGG	1 cut(s)	255
BmeT110I	CYCGRG	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	372
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	1 cut(s)	256
BmtI	GCTAGC	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	458
BpuMI	CCSGG	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	174
Bse118I	RCCGGY	1 cut(s)	402
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	226
BseXI	GCAGC	2 cut(s)	231, 439
BshFI	GGCC	1 cut(s)	64
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	2 cut(s)	255, 403
BsmAI	GTCTC	2 cut(s)	96, 162
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	64
BsoBI	CYCGRG	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp143I	GATC	2 cut(s)	280, 481
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	2 cut(s)	162, 406
BspANI	GGCC	1 cut(s)	64
BspHI	TCATGA	1 cut(s)	484
BspLI	GGNNCC	1 cut(s)	372
BspOI	GCTAGC	1 cut(s)	462
BspQI	GCTCTTC	1 cut(s)	79
BsrFI	RCCGGY	1 cut(s)	402
BssAI	RCCGGY	1 cut(s)	402
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	2 cut(s)	280, 481
BssT1I	CCWWGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	1 cut(s)	79
BstC8I	GCNNGC	3 cut(s)	242, 408, 460
BstDEI	CTNAG	1 cut(s)	362
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	2 cut(s)	283, 484
BstMAI	GTCTC	2 cut(s)	96, 162
BstMBI	GATC	2 cut(s)	280, 481
BstMWI	GCNNNNNNNGC	1 cut(s)	499
BstSCI	CCNGG	1 cut(s)	253
BstV1I	GCAGC	2 cut(s)	231, 439
BsuRI	GGCC	1 cut(s)	64
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	226
Cac8I	GCNNGC	3 cut(s)	242, 408, 460
CciI	TCATGA	1 cut(s)	484
Cfr10I	RCCGGY	1 cut(s)	402
CviAII	CATG	3 cut(s)	125, 175, 485
DdeI	CTNAG	1 cut(s)	362
DpnI	GATC	2 cut(s)	282, 483
DpnII	GATC	2 cut(s)	280, 481
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	174
Eco147I	AGGCCT	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	412
Eco88I	CYCGRG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	3 cut(s)	128, 178, 488
FaiI	YATR	7 cut(s)	21, 38, 126, 176, 444, 465, 486
FalI	AAGNNNNNCTT	6 cut(s)	52, 84, 173, 205, 333, 365
FatI	CATG	3 cut(s)	124, 174, 484
FauI	CCCGC	1 cut(s)	399
FbaI	TGATCA	2 cut(s)	280, 481
Fnu4HI	GCNGC	2 cut(s)	245, 428
FokI	GGATG	1 cut(s)	233
FriOI	GRGCYC	1 cut(s)	412
Fsp4HI	GCNGC	2 cut(s)	245, 428
FspBI	CTAG	4 cut(s)	296, 314, 459, 552
GluI	GCNGC	2 cut(s)	245, 428
HaeIII	GGCC	1 cut(s)	64
HapII	CCGG	2 cut(s)	255, 403
Hin1II	CATG	3 cut(s)	128, 178, 488
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	4 cut(s)	89, 100, 170, 446
HpaII	CCGG	2 cut(s)	255, 403
Hpy188I	TCNGA	2 cut(s)	34, 79
Hpy188III	TCNNGA	3 cut(s)	86, 296, 485
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	2 cut(s)	247, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	499
HpyF3I	CTNAG	1 cut(s)	362
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	128, 178, 488
Ksp22I	TGATCA	2 cut(s)	280, 481
Kzo9I	GATC	2 cut(s)	280, 481
LguI	GCTCTTC	1 cut(s)	79
LmnI	GCTCC	1 cut(s)	370
LpnPI	CCDG	4 cut(s)	254, 268, 345, 416
Lsp1109I	GCAGC	2 cut(s)	231, 439
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	4 cut(s)	296, 314, 459, 552
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	183
MalI	GATC	2 cut(s)	282, 483
MboI	GATC	2 cut(s)	280, 481
MboII	GAAGA	6 cut(s)	21, 66, 105, 221, 313, 529
MhlI	GDGCHC	1 cut(s)	412
MluCI	AATT	5 cut(s)	133, 145, 304, 387, 511
MlyI	GAGTC	3 cut(s)	98, 164, 440
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	3 cut(s)	75, 384, 517
MseI	TTAA	1 cut(s)	417
MspI	CCGG	2 cut(s)	255, 403
MspR9I	CCNGG	1 cut(s)	255
Mva1269I	GAATGC	1 cut(s)	46
MwoI	GCNNNNNNNGC	1 cut(s)	499
NciI	CCSGG	1 cut(s)	255
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	2 cut(s)	280, 481
NheI	GCTAGC	1 cut(s)	458
NlaIII	CATG	3 cut(s)	128, 178, 488
NlaIV	GGNNCC	1 cut(s)	372
NmuCI	GTSAC	1 cut(s)	183
PaeR7I	CTCGAG	1 cut(s)	86
PagI	TCATGA	1 cut(s)	484
PceI	AGGCCT	1 cut(s)	64
PciSI	GCTCTTC	1 cut(s)	79
PctI	GAATGC	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	100
PkrI	GCNGC	2 cut(s)	246, 429
PleI	GAGTC	3 cut(s)	97, 164, 440
PpsI	GAGTC	3 cut(s)	97, 164, 440
PspN4I	GGNNCC	1 cut(s)	372
SapI	GCTCTTC	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	2 cut(s)	245, 428
Sau3AI	GATC	2 cut(s)	280, 481
SchI	GAGTC	3 cut(s)	98, 164, 440
ScrFI	CCNGG	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	412
SfaNI	GCATC	1 cut(s)	256
Sfr274I	CTCGAG	1 cut(s)	86
SlaI	CTCGAG	1 cut(s)	86
SmlI	CTYRAG	2 cut(s)	86, 473
SmoI	CTYRAG	2 cut(s)	86, 473
SpeI	ACTAGT	1 cut(s)	551
Sse9I	AATT	5 cut(s)	133, 145, 304, 387, 511
SseBI	AGGCCT	1 cut(s)	64
SsiI	CCGC	2 cut(s)	162, 406
SspMI	CTAG	4 cut(s)	296, 314, 459, 552
StuI	AGGCCT	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	2 cut(s)	87, 432
TasI	AATT	5 cut(s)	133, 145, 304, 387, 511
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	183
TseI	GCWGC	2 cut(s)	244, 427
Tsp45I	GTSAC	1 cut(s)	183
TspDTI	ATGAA	4 cut(s)	53, 99, 105, 113
XapI	RAATTY	3 cut(s)	133, 304, 511
XbaI	TCTAGA	1 cut(s)	295
XhoI	CTCGAG	1 cut(s)	86
XspI	CTAG	4 cut(s)	296, 314, 459, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.