Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001827

Physical Location & Seq

Genomic Coordinates Forward (+)

30891798 .. 30894547

Gene Structure 2750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g32060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGTTGGTGGCAAACGATATGGTGCTTCTTCGGATATGAATGCTGTTTTTCGACACGAAAGGCCTCCTTGCTCTTCTGAAGTTCTCGAGTCTCTTTGGATTCCAACTTCATCTTCATCTTTTCATGATTCAAATTCAATGGTCAATTTCAAAAATGTTAGCGGTGGAGACTCCATGAACAAGTCACTCTTCCATATTGATAAAGAAGAAAATGGAGATGATGATTATGAAGGTAGCCTTCTGCATCAACCCGGAAAGAAAAGACGGCTTACAGTTGATCAAGTTCAGTTTCTAGAGAAGAACTTTGAGCTAGAAAATAAGCTTGAACCAGATAGAAAAGTCCAACTTGCCAAAGATCTTTGCTTGGAGCCTCGCCAAGTTGCAATTTGGTTTCAAAACCGGCGGGCTCGGTTTAAGACCAAGCAGCTCGAAAAGGACTATGACTCATTGAGAGCTAGCTATGACAAGCTTAAGGCTGATCATGATAATCTAAGAAAGCAGAATGGAAATTTGAAGAATGAGATTGATTCCCTGAAGGACAAGTTGCTTTTGAGAGAGAAAGCAAGAGGGAATTTGGAGTTAAATGATGATGGAATCAATTCGCCAAAAATGGATACCCAAGTTGCTATTCCAAATAATGCTGCTGATGTTTATGTGCCGATTATGGTATGCAAGCAAGAAGATGCAAGTTCTGCCAAAAGTGATGTGTTTGACTCAGATAGCCCGCATTGCACTGAAAACCTTTCATTGTTGTTAGAGCCTAGTACTACTGCTGATTCCTCTCATGGATTTGAACCTGCTGATCACTCAGATTTCTCTCAAGACAATGAAGATGACAACAGCCTCACTAGAAGCTTTTTGCATTTGCCCCCACCTTGCTTGTTGAAACTTGAAGATATCTGCTATGATGATCCCCCTGCAATTTCTAGTAATTTCGAATTAAACCCAGTGGAAGATCAGCATTATGGTTTTTGGCCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

328

Amino Acids

37.14

Weight (kDa)

4.93

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	86 - 139	1.8e-15	Homeodomain
HALZ	PF02183	141 - 182	3.7e-16	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27045 AT1G27045 AT1G27045 AT1G27045 AT1G27045
fragaria_vesca	FvH4_4g32060 FvH4_5g15520 FvH4_5g15520 FvH4_5g15520
malus_domestica	MD06G1032300.v1.1 MD06G1187600.v1.1 MD13G1030700.v1.1 MD13G1079500.v1.1 MD14G1194000.v1.1 MD16G1079400.v1.1
prunus_persica	Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.5G185900_v2.0.a1
pyrus_communis	pycom06g16680 pycom13g06920 pycom14g16140 pycom16g06860
rosa_chinensis	RchiOBHm_Chr4g0440751 RchiOBHm_Chr7g0180571
rosa_laevigata	RLG00000005254 RLG00000006157
rosa_multiflora	Rmu_sc0000424.1_g000003 Rmu_sc0005690.1_g000017 Rmu_sc0008018.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272780 Rroxscaffold_5G00381510
rosa_rugosa	Rorug04G0327600 Rorug06G0433800
rosa_samantha	Rh4AG379400 Rh4BG392200 Rh4BG392300 Rh4CG406900 Rh4CG407000 Rh4DG386100 Rh7AG035200 Rh7BG035100 Rh7CG036700 Rh7DG035400
rosa_wichuraiana	Rw4G032630 Rw4G032660 Rw7G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	805
AciI	CCGC	3 cut(s)	162, 403, 725
AclWI	GGATC	1 cut(s)	905
AcsI	RAATTY	3 cut(s)	133, 508, 571
AcuI	CTGAAG	2 cut(s)	99, 554
AfaI	GTAC	1 cut(s)	766
AflII	CTTAAG	1 cut(s)	470
AgsI	TTSAA	9 cut(s)	132, 138, 151, 326, 395, 514, 794, 886, 893
AjuI	GAANNNNNNNTTGG	4 cut(s)	97, 129, 612, 644
AluBI	AGCT	7 cut(s)	310, 322, 427, 455, 459, 469, 855
AluI	AGCT	7 cut(s)	310, 322, 427, 455, 459, 469, 855
Alw26I	GTCTC	2 cut(s)	96, 162
AlwI	GGATC	1 cut(s)	905
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	2 cut(s)	62, 974
ApeKI	GCWGC	2 cut(s)	424, 641
ApoI	RAATTY	3 cut(s)	133, 508, 571
Asp700I	GAANNNNTTC	1 cut(s)	598
AsuC2I	CCSGG	1 cut(s)	252
AsuII	TTCGAA	1 cut(s)	936
AsuNHI	GCTAGC	1 cut(s)	455
AvaI	CYCGRG	1 cut(s)	86
BaeI	ACNNNNGTAYC	2 cut(s)	606, 639
BanII	GRGCYC	1 cut(s)	409
BbvI	GCAGC	2 cut(s)	436, 628
BccI	CCATC	1 cut(s)	584
BceAI	ACGGC	1 cut(s)	281
BciVI	GTATCC	1 cut(s)	607
BclI	TGATCA	3 cut(s)	277, 478, 802
BcnI	CCSGG	1 cut(s)	252
BcoDI	GTCTC	2 cut(s)	96, 162
BfaI	CTAG	6 cut(s)	293, 311, 456, 762, 849, 927
BfrI	CTTAAG	1 cut(s)	470
BfuAI	ACCTGC	1 cut(s)	805
BfuI	GTATCC	1 cut(s)	607
BglII	AGATCT	1 cut(s)	355
BisI	GCNGC	2 cut(s)	425, 642
BlsI	GCNGC	2 cut(s)	426, 643
BmcAI	AGTACT	1 cut(s)	766
Bme1390I	CCNGG	1 cut(s)	252
BmeT110I	CYCGRG	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	369
BmrFI	CCNGG	1 cut(s)	252
BmrI	ACTGGG	1 cut(s)	941
BmsI	GCATC	2 cut(s)	253, 673
BmtI	GCTAGC	1 cut(s)	459
BmuI	ACTGGG	1 cut(s)	941
Bpu14I	TTCGAA	1 cut(s)	936
BpuEI	CTTGAG	1 cut(s)	804
BpuMI	CCSGG	1 cut(s)	252
Bse118I	RCCGGY	1 cut(s)	399
Bse1I	ACTGG	1 cut(s)	947
Bse3DI	GCAATG	1 cut(s)	727
BseMI	GCAATG	1 cut(s)	727
BseMII	CTCAG	2 cut(s)	729, 822
BseNI	ACTGG	1 cut(s)	947
BseXI	GCAGC	2 cut(s)	436, 628
BshFI	GGCC	2 cut(s)	64, 976
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	2 cut(s)	252, 400
BsmAI	GTCTC	2 cut(s)	96, 162
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	2 cut(s)	64, 976
BsoBI	CYCGRG	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	936
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp143I	GATC	6 cut(s)	277, 355, 478, 802, 910, 955
BspACI	CCGC	3 cut(s)	162, 403, 725
BspANI	GGCC	2 cut(s)	64, 976
BspCNI	CTCAG	2 cut(s)	728, 821
BspHI	TCATGA	2 cut(s)	124, 481
BspLI	GGNNCC	1 cut(s)	369
BspMI	ACCTGC	1 cut(s)	805
BspOI	GCTAGC	1 cut(s)	459
BspPI	GGATC	1 cut(s)	905
BspQI	GCTCTTC	1 cut(s)	79
BspT104I	TTCGAA	1 cut(s)	936
BspTI	CTTAAG	1 cut(s)	470
BsrDI	GCAATG	1 cut(s)	727
BsrFI	RCCGGY	1 cut(s)	399
BsrI	ACTGG	1 cut(s)	947
BssAI	RCCGGY	1 cut(s)	399
BssMI	GATC	6 cut(s)	277, 355, 478, 802, 910, 955
Bst4CI	ACNGT	1 cut(s)	274
Bst6I	CTCTTC	2 cut(s)	79, 194
BstAFI	CTTAAG	1 cut(s)	470
BstAPI	GCANNNNNTGC	1 cut(s)	692
BstBI	TTCGAA	1 cut(s)	936
BstC8I	GCNNGC	4 cut(s)	405, 457, 674, 725
BstDEI	CTNAG	3 cut(s)	491, 715, 808
BstKTI	GATC	6 cut(s)	280, 358, 481, 805, 913, 958
BstMAI	GTCTC	2 cut(s)	96, 162
BstMBI	GATC	6 cut(s)	277, 355, 478, 802, 910, 955
BstMWI	GCNNNNNNNGC	2 cut(s)	692, 729
BstSCI	CCNGG	1 cut(s)	250
BstV1I	GCAGC	2 cut(s)	436, 628
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BsuI	GTATCC	1 cut(s)	607
BsuRI	GGCC	2 cut(s)	64, 976
BtsIMutI	CAGTG	2 cut(s)	732, 954
BveI	ACCTGC	1 cut(s)	805
Cac8I	GCNNGC	4 cut(s)	405, 457, 674, 725
CciI	TCATGA	2 cut(s)	124, 481
Cfr10I	RCCGGY	1 cut(s)	399
Csp6I	GTAC	1 cut(s)	765
CspCI	CAANNNNNGTGG	2 cut(s)	861, 896
CviAII	CATG	4 cut(s)	125, 175, 482, 785
CviQI	GTAC	1 cut(s)	765
DdeI	CTNAG	3 cut(s)	491, 715, 808
DpnI	GATC	6 cut(s)	279, 357, 480, 804, 912, 957
DpnII	GATC	6 cut(s)	277, 355, 478, 802, 910, 955
Eam1104I	CTCTTC	2 cut(s)	79, 194
EarI	CTCTTC	2 cut(s)	79, 194
Eco147I	AGGCCT	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	409
Eco32I	GATATC	1 cut(s)	898
Eco57I	CTGAAG	2 cut(s)	99, 554
Eco88I	CYCGRG	1 cut(s)	86
EcoRV	GATATC	1 cut(s)	898
EcoT38I	GRGCYC	1 cut(s)	409
FaeI	CATG	4 cut(s)	128, 178, 485, 788
FalI	AAGNNNNNCTT	8 cut(s)	52, 84, 173, 205, 222, 254, 330, 362
FatI	CATG	4 cut(s)	124, 174, 481, 784
FauI	CCCGC	2 cut(s)	396, 732
FbaI	TGATCA	3 cut(s)	277, 478, 802
Fnu4HI	GCNGC	2 cut(s)	425, 642
FriOI	GRGCYC	1 cut(s)	409
Fsp4HI	GCNGC	2 cut(s)	425, 642
FspBI	CTAG	6 cut(s)	293, 311, 456, 762, 849, 927
GluI	GCNGC	2 cut(s)	425, 642
HaeIII	GGCC	2 cut(s)	64, 976
HapII	CCGG	2 cut(s)	252, 400
Hin1II	CATG	4 cut(s)	128, 178, 485, 788
HindIII	AAGCTT	3 cut(s)	320, 467, 853
HinfI	GANTC	9 cut(s)	89, 100, 128, 170, 443, 527, 594, 713, 776
HpaII	CCGG	2 cut(s)	252, 400
Hpy188I	TCNGA	4 cut(s)	34, 79, 718, 811
Hpy188III	TCNNGA	5 cut(s)	86, 125, 293, 482, 821
HpyAV	CCTTC	3 cut(s)	224, 248, 529
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4V	TGCA	7 cut(s)	244, 383, 672, 686, 732, 862, 920
HpyF10VI	GCNNNNNNNGC	2 cut(s)	692, 729
HpyF3I	CTNAG	3 cut(s)	491, 715, 808
Hsp92II	CATG	4 cut(s)	128, 178, 485, 788
Ksp22I	TGATCA	3 cut(s)	277, 478, 802
Kzo9I	GATC	6 cut(s)	277, 355, 478, 802, 910, 955
LguI	GCTCTTC	1 cut(s)	79
LmnI	GCTCC	1 cut(s)	367
LpnPI	CCDG	7 cut(s)	265, 342, 413, 545, 810, 930, 960
Lsp1109I	GCAGC	2 cut(s)	436, 628
LweI	GCATC	2 cut(s)	253, 673
MaeI	CTAG	6 cut(s)	293, 311, 456, 762, 849, 927
MaeIII	GTNAC	1 cut(s)	183
MalI	GATC	6 cut(s)	279, 357, 480, 804, 912, 957
MboI	GATC	6 cut(s)	277, 355, 478, 802, 910, 955
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	1 cut(s)	409
MluCI	AATT	9 cut(s)	133, 145, 384, 508, 571, 598, 921, 931, 938
MlyI	GAGTC	4 cut(s)	98, 164, 437, 707
MmeI	TCCRAC	2 cut(s)	128, 367
MnlI	CCTC	5 cut(s)	75, 381, 560, 790, 854
MroXI	GAANNNNTTC	1 cut(s)	598
MseI	TTAA	4 cut(s)	414, 471, 581, 941
MspCI	CTTAAG	1 cut(s)	470
MspI	CCGG	2 cut(s)	252, 400
MspR9I	CCNGG	1 cut(s)	252
Mva1269I	GAATGC	1 cut(s)	46
MwoI	GCNNNNNNNGC	2 cut(s)	692, 729
NciI	CCSGG	1 cut(s)	252
NdeII	GATC	6 cut(s)	277, 355, 478, 802, 910, 955
NheI	GCTAGC	1 cut(s)	455
NlaIII	CATG	4 cut(s)	128, 178, 485, 788
NlaIV	GGNNCC	1 cut(s)	369
NmuCI	GTSAC	1 cut(s)	183
NspV	TTCGAA	1 cut(s)	936
PaeR7I	CTCGAG	1 cut(s)	86
PagI	TCATGA	2 cut(s)	124, 481
PceI	AGGCCT	1 cut(s)	64
PciSI	GCTCTTC	1 cut(s)	79
PctI	GAATGC	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	598
PfeI	GAWTC	5 cut(s)	100, 128, 527, 594, 776
PkrI	GCNGC	2 cut(s)	426, 643
PleI	GAGTC	4 cut(s)	97, 164, 437, 707
PpsI	GAGTC	4 cut(s)	97, 164, 437, 707
PspN4I	GGNNCC	1 cut(s)	369
PsuI	RGATCY	1 cut(s)	355
RsaI	GTAC	1 cut(s)	766
RsaNI	GTAC	1 cut(s)	765
SapI	GCTCTTC	1 cut(s)	79
SaqAI	TTAA	4 cut(s)	414, 471, 581, 941
SatI	GCNGC	2 cut(s)	425, 642
Sau3AI	GATC	6 cut(s)	277, 355, 478, 802, 910, 955
ScaI	AGTACT	1 cut(s)	766
SchI	GAGTC	4 cut(s)	98, 164, 437, 707
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	1 cut(s)	409
SfaNI	GCATC	2 cut(s)	253, 673
Sfr274I	CTCGAG	1 cut(s)	86
SfuI	TTCGAA	1 cut(s)	936
SlaI	CTCGAG	1 cut(s)	86
SmlI	CTYRAG	3 cut(s)	86, 470, 819
SmoI	CTYRAG	3 cut(s)	86, 470, 819
Sse9I	AATT	9 cut(s)	133, 145, 384, 508, 571, 598, 921, 931, 938
SseBI	AGGCCT	1 cut(s)	64
SsiI	CCGC	3 cut(s)	162, 403, 725
SspMI	CTAG	6 cut(s)	293, 311, 456, 762, 849, 927
StuI	AGGCCT	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	250
TaaI	ACNGT	1 cut(s)	274
TaqI	TCGA	4 cut(s)	52, 87, 429, 936
TasI	AATT	9 cut(s)	133, 145, 384, 508, 571, 598, 921, 931, 938
TatI	WGTACW	1 cut(s)	764
TfiI	GAWTC	5 cut(s)	100, 128, 527, 594, 776
Tru1I	TTAA	4 cut(s)	414, 471, 581, 941
Tru9I	TTAA	4 cut(s)	414, 471, 581, 941
TscAI	CASTG	2 cut(s)	739, 954
TseFI	GTSAC	1 cut(s)	183
TseI	GCWGC	2 cut(s)	424, 641
Tsp45I	GTSAC	1 cut(s)	183
TspDTI	ATGAA	8 cut(s)	53, 99, 105, 113, 191, 243, 735, 843
TspRI	CASTG	2 cut(s)	739, 954
Vha464I	CTTAAG	1 cut(s)	470
XapI	RAATTY	3 cut(s)	133, 508, 571
XbaI	TCTAGA	1 cut(s)	292
XhoI	CTCGAG	1 cut(s)	86
XmnI	GAANNNNTTC	1 cut(s)	598
XspI	CTAG	6 cut(s)	293, 311, 456, 762, 849, 927
ZrmI	AGTACT	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.