Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001827

Physical Location & Seq

Genomic Coordinates Reverse (-)

2431757 .. 2434030

Gene Structure 2274 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG035200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCAAGAAATGGTCTAATTTACATGTTATGTGTTTATTCAGGTTCATCCATGATGAGTTTCGAAGGTGTTCGGAGAGGAAATGGATTGAAGAGGTCCGCGTTCCAGCAATACGAGCACGAAGACAATTGTGATGAGGAATTCGATGAGTACTTTCATCAACCTGGAAAGAAGAGGCGGCTAACTGCTGATCAAGTCCAGTTCCTCGAGAAAAGCTTTGACTTGGAAAACAAGCTTGAACCAGAAAGGAAGATCCTGCTTGCAAAAGACCTTGGCTTGCAGCCTCGGCAGGTTGCGATTTGGTTCCAAAACCGCCGCGCAAGGTGGAAGACAAAGCAGCTGGAGAAGGACTATGATGTTTTGCAAGCCGACTATAATAGTCTCAAGGCGGATTGCGATAGCATTTGTAAAGAGAATGATAAGCTGAAAGCTGAGGTATACATTAGTAATCTCTATATTGGTTCACTGCCTTGTGTGTCCATTTGTGGCTTTTTGCTTATCAATTTGTTATGTTCGAATTGTTTCTCAGGTTGTTCAGCTATCGGACAGGCTGCGGCTGAAAGACGAAGAGATGGCAAACTCAGAACAATCGGATACGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

200

Amino Acids

23.05

Weight (kDa)

8.02

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	57 - 110	3.5e-17	Homeodomain
HALZ	PF02183	112 - 146	7e-14	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27045 AT1G27045 AT1G27045 AT1G27045 AT1G27045
fragaria_vesca	FvH4_4g32060 FvH4_5g15520 FvH4_5g15520 FvH4_5g15520
malus_domestica	MD06G1032300.v1.1 MD06G1187600.v1.1 MD13G1030700.v1.1 MD13G1079500.v1.1 MD14G1194000.v1.1 MD16G1079400.v1.1
prunus_persica	Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.5G185900_v2.0.a1
pyrus_communis	pycom06g16680 pycom13g06920 pycom14g16140 pycom16g06860
rosa_chinensis	RchiOBHm_Chr4g0440751 RchiOBHm_Chr7g0180571
rosa_laevigata	RLG00000005254 RLG00000006157
rosa_multiflora	Rmu_sc0000424.1_g000003 Rmu_sc0005690.1_g000017 Rmu_sc0008018.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272780 Rroxscaffold_5G00381510
rosa_rugosa	Rorug04G0327600 Rorug06G0433800
rosa_samantha	Rh4AG379400 Rh4BG392200 Rh4BG392300 Rh4CG406900 Rh4CG407000 Rh4DG386100 Rh7AG035200 Rh7BG035100 Rh7CG036700 Rh7DG035400
rosa_wichuraiana	Rw4G032630 Rw4G032660 Rw7G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	280
AccI	GTMKAC	1 cut(s)	438
AccII	CGCG	2 cut(s)	101, 318
AciI	CCGC	6 cut(s)	99, 178, 313, 316, 389, 554
AclWI	GGATC	1 cut(s)	247
AcsI	RAATTY	1 cut(s)	140
AfaI	GTAC	1 cut(s)	152
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	91, 239
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	6 cut(s)	216, 235, 340, 424, 431, 539
AluI	AGCT	6 cut(s)	216, 235, 340, 424, 431, 539
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	1 cut(s)	386
AlwI	GGATC	1 cut(s)	247
Ama87I	CYCGRG	1 cut(s)	206
ApeKI	GCWGC	3 cut(s)	280, 337, 551
ApoI	RAATTY	1 cut(s)	140
Asp700I	GAANNNNTTC	2 cut(s)	69, 521
AspLEI	GCGC	1 cut(s)	320
AspS9I	GGNCC	1 cut(s)	96
AsuII	TTCGAA	2 cut(s)	63, 515
AvaI	CYCGRG	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	96
BbsI	GAAGAC	2 cut(s)	129, 335
Bbv12I	GWGCWC	1 cut(s)	120
BbvCI	CCTCAGC	1 cut(s)	432
BbvI	GCAGC	3 cut(s)	292, 349, 538
BccI	CCATC	1 cut(s)	566
BciT130I	CCWGG	1 cut(s)	165
BciVI	GTATCC	1 cut(s)	587
BclI	TGATCA	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	386
BfuAI	ACCTGC	1 cut(s)	280
BfuI	GTATCC	1 cut(s)	587
BisI	GCNGC	6 cut(s)	179, 281, 316, 338, 552, 555
BlsI	GCNGC	6 cut(s)	180, 282, 317, 339, 553, 556
BmcAI	AGTACT	1 cut(s)	152
Bme1390I	CCNGG	1 cut(s)	165
Bme18I	GGWCC	1 cut(s)	96
BmeT110I	CYCGRG	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	305
BmrFI	CCNGG	1 cut(s)	165
BpiI	GAAGAC	2 cut(s)	129, 335
BpmI	CTGGAG	1 cut(s)	362
Bpu10I	CCTNAGC	1 cut(s)	432
Bpu14I	TTCGAA	2 cut(s)	63, 515
BpuEI	CTTGAG	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	271, 284
Bse1I	ACTGG	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	2 cut(s)	271, 284
BseGI	GGATG	1 cut(s)	47
BseMII	CTCAG	3 cut(s)	423, 540, 595
BseNI	ACTGG	1 cut(s)	199
BseXI	GCAGC	3 cut(s)	292, 349, 538
Bsh1236I	CGCG	2 cut(s)	101, 318
BsiHKAI	GWGCWC	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	386
BsoBI	CYCGRG	1 cut(s)	206
Bsp119I	TTCGAA	2 cut(s)	63, 515
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	2 cut(s)	190, 252
BspACI	CCGC	6 cut(s)	99, 178, 313, 316, 389, 554
BspCNI	CTCAG	3 cut(s)	424, 539, 594
BspFNI	CGCG	2 cut(s)	101, 318
BspLI	GGNNCC	1 cut(s)	305
BspMI	ACCTGC	1 cut(s)	280
BspPI	GGATC	1 cut(s)	247
BspT104I	TTCGAA	2 cut(s)	63, 515
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	2 cut(s)	271, 284
BssMI	GATC	2 cut(s)	190, 252
BssNAI	GTATAC	1 cut(s)	439
BssT1I	CCWWGG	1 cut(s)	271
Bst1107I	GTATAC	1 cut(s)	439
Bst2UI	CCWGG	1 cut(s)	165
Bst6I	CTCTTC	3 cut(s)	86, 167, 562
BstBI	TTCGAA	2 cut(s)	63, 515
BstC8I	GCNNGC	3 cut(s)	261, 278, 366
BstDEI	CTNAG	3 cut(s)	432, 526, 581
BstF5I	GGATG	1 cut(s)	47
BstFNI	CGCG	2 cut(s)	101, 318
BstHHI	GCGC	1 cut(s)	320
BstKTI	GATC	2 cut(s)	193, 255
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	2 cut(s)	190, 252
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 286
BstNI	CCWGG	1 cut(s)	165
BstNSI	RCATGY	1 cut(s)	28
BstSCI	CCNGG	1 cut(s)	163
BstUI	CGCG	2 cut(s)	101, 318
BstV1I	GCAGC	3 cut(s)	292, 349, 538
BstV2I	GAAGAC	2 cut(s)	129, 335
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
BstZ17I	GTATAC	1 cut(s)	439
BsuI	GTATCC	1 cut(s)	587
BtsCI	GGATG	1 cut(s)	47
BtsI	GCAGTG	1 cut(s)	464
BtsIMutI	CAGTG	1 cut(s)	464
BveI	ACCTGC	1 cut(s)	280
Cac8I	GCNNGC	3 cut(s)	261, 278, 366
CfoI	GCGC	1 cut(s)	320
Cfr13I	GGNCC	1 cut(s)	96
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	2 cut(s)	25, 52
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	3 cut(s)	432, 526, 581
DpnI	GATC	2 cut(s)	192, 254
DpnII	GATC	2 cut(s)	190, 252
Eam1104I	CTCTTC	3 cut(s)	86, 167, 562
EarI	CTCTTC	3 cut(s)	86, 167, 562
EciI	GGCGGA	1 cut(s)	404
Eco130I	CCWWGG	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	2 cut(s)	28, 55
FaiI	YATR	8 cut(s)	26, 31, 53, 354, 375, 439, 456, 511
FatI	CATG	2 cut(s)	24, 51
FbaI	TGATCA	1 cut(s)	190
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	6 cut(s)	179, 281, 316, 338, 552, 555
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	6 cut(s)	179, 281, 316, 338, 552, 555
GlaI	GCGC	1 cut(s)	319
GluI	GCNGC	6 cut(s)	179, 281, 316, 338, 552, 555
GsuI	CTGGAG	1 cut(s)	362
HhaI	GCGC	1 cut(s)	320
Hin1II	CATG	2 cut(s)	28, 55
Hin6I	GCGC	1 cut(s)	318
HinP1I	GCGC	1 cut(s)	318
HindIII	AAGCTT	2 cut(s)	214, 233
Hpy166II	GTNNAC	2 cut(s)	439, 464
Hpy188I	TCNGA	4 cut(s)	75, 545, 584, 593
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	2 cut(s)	439, 464
HpyAV	CCTTC	2 cut(s)	59, 340
HpyCH4V	TGCA	3 cut(s)	263, 280, 364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 286
HpyF3I	CTNAG	3 cut(s)	432, 526, 581
Hsp92II	CATG	2 cut(s)	28, 55
HspAI	GCGC	1 cut(s)	318
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	190, 252
Lsp1109I	GCAGC	3 cut(s)	292, 349, 538
MalI	GATC	2 cut(s)	192, 254
MboI	GATC	2 cut(s)	190, 252
MboII	GAAGA	6 cut(s)	103, 134, 184, 262, 340, 579
MfeI	CAATTG	1 cut(s)	127
MflI	RGATCY	1 cut(s)	252
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	5 cut(s)	18, 127, 140, 502, 517
MnlI	CCTC	7 cut(s)	71, 87, 130, 168, 215, 294, 427
MroXI	GAANNNNTTC	2 cut(s)	69, 521
MspA1I	CMGCKG	1 cut(s)	340
MspR9I	CCNGG	1 cut(s)	165
MunI	CAATTG	1 cut(s)	127
MvaI	CCWGG	1 cut(s)	165
MvnI	CGCG	2 cut(s)	101, 318
MwoI	GCNNNNNNNGC	2 cut(s)	115, 286
NdeII	GATC	2 cut(s)	190, 252
NlaIII	CATG	2 cut(s)	28, 55
NlaIV	GGNNCC	1 cut(s)	305
NmeAIII	GCCGAG	1 cut(s)	265
NspI	RCATGY	1 cut(s)	28
NspV	TTCGAA	2 cut(s)	63, 515
PaeR7I	CTCGAG	1 cut(s)	206
PciI	ACATGT	1 cut(s)	24
PdmI	GAANNNNTTC	2 cut(s)	69, 521
PkrI	GCNGC	6 cut(s)	180, 282, 317, 339, 553, 556
PscI	ACATGT	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	163
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	305
PspPI	GGNCC	1 cut(s)	96
PsuI	RGATCY	1 cut(s)	252
PvuII	CAGCTG	1 cut(s)	340
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SatI	GCNGC	6 cut(s)	179, 281, 316, 338, 552, 555
Sau3AI	GATC	2 cut(s)	190, 252
Sau96I	GGNCC	1 cut(s)	96
ScaI	AGTACT	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	165
SduI	GDGCHC	1 cut(s)	120
Sfr274I	CTCGAG	1 cut(s)	206
SfuI	TTCGAA	2 cut(s)	63, 515
SinI	GGWCC	1 cut(s)	96
SlaI	CTCGAG	1 cut(s)	206
SmlI	CTYRAG	2 cut(s)	206, 383
SmoI	CTYRAG	2 cut(s)	206, 383
Sse9I	AATT	5 cut(s)	18, 127, 140, 502, 517
SsiI	CCGC	6 cut(s)	99, 178, 313, 316, 389, 554
StyD4I	CCNGG	1 cut(s)	163
StyI	CCWWGG	1 cut(s)	271
TaqI	TCGA	4 cut(s)	63, 144, 207, 515
TasI	AATT	5 cut(s)	18, 127, 140, 502, 517
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	3 cut(s)	181, 318, 557
TscAI	CASTG	1 cut(s)	471
TseI	GCWGC	3 cut(s)	280, 337, 551
TspDTI	ATGAA	2 cut(s)	36, 146
TspRI	CASTG	1 cut(s)	471
VpaK11BI	GGWCC	1 cut(s)	96
XapI	RAATTY	1 cut(s)	140
XceI	RCATGY	1 cut(s)	28
XhoI	CTCGAG	1 cut(s)	206
XmiI	GTMKAC	1 cut(s)	438
XmnI	GAANNNNTTC	2 cut(s)	69, 521
ZrmI	AGTACT	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.