Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001827

Physical Location & Seq

Genomic Coordinates Forward (+)

8760082 .. 8762437

Gene Structure 2356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15520.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCCGGCGGTGGGAGGGTCTATAATAGTAGCGGTGGTGCTTCGTTTTTGCTTCGGAATCAGAGAGGTTCTTCCGCTTCCGAGCCTCTCGATTCTCTTTTCCTTTCTGGGTCCTCTAATGCTTCCTCTACTTCTCCTTTTCTCGGTTCATCCATGGTGAGTTTCGAAGATGTTCGTGGAGGAAATGGATTGAAGAGGTCCATGTTCCACCAATACGAGCACGAAGACAATTGTGATGAGGAATTTGATGACTACTTCCATCAACCTGGAAAGAAGAGACGGCTTACTGCTGATCAAGTCCAGTTCCTCGAGAAAAGCTTTGACTTGGAAAACAAGCTTGAACCAGAAAGGAAGATCCTGCTTGCAAAAGACCTTGGCTTGCAGCCTCGGCAGGTTGCGATTTGGTTCCAAAACCGCCGCGCAAGGTGGAAGACTAAGCAGCTGGAGAAGGACTATGATGTTTTGCAAGCCAACTATAATAGTCTCAAGGCGGATTGCGATAGCCTTTGTAAAGAAAATGATAAACTCAAAGCTGAGGTTCTTCTGCTCTCGGAGAGGCTGCAGCTCAAAGATAAAGAGAGGGCAAACTCAGAACAATCGGATACAAACAAATCACATCAAGAACCACAGCAGATGCCAATCGCTGAATCTGTCTCCTCGGAAGGTGAAGTATCCAAACTCTCAGTTGTGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

232

Amino Acids

26.04

Weight (kDa)

5.7

Isoelectric Point (pI)

56.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	91 - 144	8.1e-17	Homeodomain
HALZ	PF02183	146 - 188	9.1e-16	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27045 AT1G27045 AT1G27045 AT1G27045 AT1G27045
fragaria_vesca	FvH4_4g32060 FvH4_5g15520 FvH4_5g15520 FvH4_5g15520
malus_domestica	MD06G1032300.v1.1 MD06G1187600.v1.1 MD13G1030700.v1.1 MD13G1079500.v1.1 MD14G1194000.v1.1 MD16G1079400.v1.1
prunus_persica	Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.5G185900_v2.0.a1
pyrus_communis	pycom06g16680 pycom13g06920 pycom14g16140 pycom16g06860
rosa_chinensis	RchiOBHm_Chr4g0440751 RchiOBHm_Chr7g0180571
rosa_laevigata	RLG00000005254 RLG00000006157
rosa_multiflora	Rmu_sc0000424.1_g000003 Rmu_sc0005690.1_g000017 Rmu_sc0008018.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272780 Rroxscaffold_5G00381510
rosa_rugosa	Rorug04G0327600 Rorug06G0433800
rosa_samantha	Rh4AG379400 Rh4BG392200 Rh4BG392300 Rh4CG406900 Rh4CG407000 Rh4DG386100 Rh7AG035200 Rh7BG035100 Rh7CG036700 Rh7DG035400
rosa_wichuraiana	Rw4G032630 Rw4G032660 Rw7G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	382
AccII	CGCG	1 cut(s)	420
AciI	CCGC	6 cut(s)	9, 33, 75, 415, 418, 491
AclWI	GGATC	1 cut(s)	349
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	242
AfiI	CCNNNNNNNGG	2 cut(s)	12, 143
AgsI	TTSAA	2 cut(s)	193, 341
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	5 cut(s)	318, 337, 442, 533, 565
AluI	AGCT	5 cut(s)	318, 337, 442, 533, 565
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	3 cut(s)	271, 488, 658
AlwI	GGATC	1 cut(s)	349
Ama87I	CYCGRG	1 cut(s)	308
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	382, 439, 559, 562
ApoI	RAATTY	1 cut(s)	242
Asp700I	GAANNNNTTC	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	422
AspS9I	GGNCC	2 cut(s)	111, 198
AsuHPI	GGTGA	2 cut(s)	169, 677
AsuII	TTCGAA	1 cut(s)	165
AvaI	CYCGRG	1 cut(s)	308
AvaII	GGWCC	2 cut(s)	111, 198
BbsI	GAAGAC	2 cut(s)	231, 437
Bbv12I	GWGCWC	1 cut(s)	222
BbvCI	CCTCAGC	1 cut(s)	534
BbvI	GCAGC	4 cut(s)	394, 451, 546, 574
BccI	CCATC	1 cut(s)	267
BceAI	ACGGC	1 cut(s)	296
BciT130I	CCWGG	1 cut(s)	267
BciVI	GTATCC	2 cut(s)	595, 682
BclI	TGATCA	1 cut(s)	292
BcoDI	GTCTC	3 cut(s)	271, 488, 658
BfmI	CTRYAG	1 cut(s)	560
BfuAI	ACCTGC	1 cut(s)	382
BfuI	GTATCC	2 cut(s)	595, 682
BisI	GCNGC	5 cut(s)	383, 418, 440, 560, 563
BlsI	GCNGC	5 cut(s)	384, 419, 441, 561, 564
Bme1390I	CCNGG	1 cut(s)	267
Bme18I	GGWCC	2 cut(s)	111, 198
BmeT110I	CYCGRG	1 cut(s)	308
BmgT120I	GGNCC	2 cut(s)	111, 198
BmiI	GGNNCC	2 cut(s)	112, 407
BmrFI	CCNGG	1 cut(s)	267
BmsI	GCATC	1 cut(s)	624
BpiI	GAAGAC	2 cut(s)	231, 437
BpmI	CTGGAG	1 cut(s)	464
Bpu10I	CCTNAGC	1 cut(s)	534
Bpu14I	TTCGAA	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	470
BsaBI	GATNNNNATC	1 cut(s)	638
BsaJI	CCNNGG	4 cut(s)	153, 373, 386, 657
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 143
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	301
Bse8I	GATNNNNATC	1 cut(s)	638
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	4 cut(s)	153, 373, 386, 657
BseGI	GGATG	1 cut(s)	149
BseJI	GATNNNNATC	1 cut(s)	638
BseLI	CCNNNNNNNGG	2 cut(s)	12, 143
BseMII	CTCAG	3 cut(s)	525, 603, 696
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	1 cut(s)	646
BseXI	GCAGC	4 cut(s)	394, 451, 546, 574
Bsh1236I	CGCG	1 cut(s)	420
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	6
BslI	CCNNNNNNNGG	2 cut(s)	12, 143
BsmAI	GTCTC	3 cut(s)	271, 488, 658
BsmBI	CGTCTC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	308
Bsp119I	TTCGAA	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	292, 354
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	6 cut(s)	9, 33, 75, 415, 418, 491
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	526, 602, 695
BspFNI	CGCG	1 cut(s)	420
BspLI	GGNNCC	2 cut(s)	112, 407
BspMAI	CTGCAG	1 cut(s)	564
BspMI	ACCTGC	1 cut(s)	382
BspPI	GGATC	1 cut(s)	349
BspT104I	TTCGAA	1 cut(s)	165
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	4 cut(s)	153, 373, 386, 657
BssMI	GATC	2 cut(s)	292, 354
BssT1I	CCWWGG	2 cut(s)	153, 373
Bst2UI	CCWGG	1 cut(s)	267
Bst6I	CTCTTC	2 cut(s)	188, 269
BstBI	TTCGAA	1 cut(s)	165
BstC8I	GCNNGC	4 cut(s)	7, 363, 380, 468
BstDEI	CTNAG	4 cut(s)	435, 534, 589, 682
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	149
BstFNI	CGCG	1 cut(s)	420
BstHHI	GCGC	1 cut(s)	422
BstKTI	GATC	2 cut(s)	295, 357
BstMAI	GTCTC	3 cut(s)	271, 488, 658
BstMBI	GATC	2 cut(s)	292, 354
BstMWI	GCNNNNNNNGC	1 cut(s)	388
BstNI	CCWGG	1 cut(s)	267
BstSCI	CCNGG	1 cut(s)	265
BstSFI	CTRYAG	1 cut(s)	560
BstUI	CGCG	1 cut(s)	420
BstV1I	GCAGC	4 cut(s)	394, 451, 546, 574
BstV2I	GAAGAC	2 cut(s)	231, 437
BstX2I	RGATCY	1 cut(s)	354
BstXI	CCANNNNNNTGG	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	354
BsuI	GTATCC	2 cut(s)	595, 682
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	149
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	4 cut(s)	7, 363, 380, 468
CfoI	GCGC	1 cut(s)	422
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	2 cut(s)	111, 198
CviAII	CATG	2 cut(s)	154, 202
DdeI	CTNAG	4 cut(s)	435, 534, 589, 682
DpnI	GATC	2 cut(s)	294, 356
DpnII	GATC	2 cut(s)	292, 354
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	188, 269
EarI	CTCTTC	2 cut(s)	188, 269
EciI	GGCGGA	1 cut(s)	506
Eco130I	CCWWGG	2 cut(s)	153, 373
Eco47I	GGWCC	2 cut(s)	111, 198
Eco88I	CYCGRG	1 cut(s)	308
EcoO109I	RGGNCCY	1 cut(s)	111
EcoRII	CCWGG	1 cut(s)	265
EcoT14I	CCWWGG	2 cut(s)	153, 373
ErhI	CCWWGG	2 cut(s)	153, 373
Esp3I	CGTCTC	1 cut(s)	271
FaeI	CATG	2 cut(s)	157, 205
FaiI	YATR	6 cut(s)	24, 155, 203, 456, 477, 694
FatI	CATG	2 cut(s)	153, 201
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	5 cut(s)	383, 418, 440, 560, 563
FokI	GGATG	1 cut(s)	136
Fsp4HI	GCNGC	5 cut(s)	383, 418, 440, 560, 563
GlaI	GCGC	1 cut(s)	421
GluI	GCNGC	5 cut(s)	383, 418, 440, 560, 563
GsuI	CTGGAG	1 cut(s)	464
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	6
HhaI	GCGC	1 cut(s)	422
Hin1II	CATG	2 cut(s)	157, 205
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HindIII	AAGCTT	2 cut(s)	316, 335
HinfI	GANTC	3 cut(s)	58, 92, 647
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	2 cut(s)	169, 677
Hpy188I	TCNGA	7 cut(s)	57, 63, 82, 553, 592, 601, 661
Hpy188III	TCNNGA	3 cut(s)	89, 310, 620
HpyAV	CCTTC	2 cut(s)	442, 656
HpyCH4V	TGCA	4 cut(s)	365, 382, 466, 562
HpyF10VI	GCNNNNNNNGC	1 cut(s)	388
HpyF3I	CTNAG	4 cut(s)	435, 534, 589, 682
Hsp92II	CATG	2 cut(s)	157, 205
HspAI	GCGC	1 cut(s)	420
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	2 cut(s)	292, 354
LpnPI	CCDG	9 cut(s)	19, 93, 252, 279, 314, 357, 371, 377, 428
Lsp1109I	GCAGC	4 cut(s)	394, 451, 546, 574
LweI	GCATC	1 cut(s)	624
MalI	GATC	2 cut(s)	294, 356
MboI	GATC	2 cut(s)	292, 354
MboII	GAAGA	8 cut(s)	63, 179, 205, 236, 286, 364, 442, 533
MfeI	CAATTG	1 cut(s)	229
MflI	RGATCY	1 cut(s)	354
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	2 cut(s)	229, 242
MroNI	GCCGGC	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	442
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	267
MunI	CAATTG	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	267
MvnI	CGCG	1 cut(s)	420
MwoI	GCNNNNNNNGC	1 cut(s)	388
NaeI	GCCGGC	1 cut(s)	7
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	2 cut(s)	292, 354
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	2 cut(s)	157, 205
NlaIV	GGNNCC	2 cut(s)	112, 407
NmeAIII	GCCGAG	1 cut(s)	367
NspV	TTCGAA	1 cut(s)	165
PaeR7I	CTCGAG	1 cut(s)	308
PdiI	GCCGGC	1 cut(s)	7
PdmI	GAANNNNTTC	1 cut(s)	171
PfeI	GAWTC	3 cut(s)	58, 92, 647
PkrI	GCNGC	5 cut(s)	384, 419, 441, 561, 564
PpuMI	RGGWCCY	1 cut(s)	111
Psp5II	RGGWCCY	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	2 cut(s)	112, 407
PspPI	GGNCC	2 cut(s)	111, 198
PspPPI	RGGWCCY	1 cut(s)	111
PstI	CTGCAG	1 cut(s)	564
PsuI	RGATCY	1 cut(s)	354
PvuII	CAGCTG	1 cut(s)	442
SatI	GCNGC	5 cut(s)	383, 418, 440, 560, 563
Sau3AI	GATC	2 cut(s)	292, 354
Sau96I	GGNCC	2 cut(s)	111, 198
ScrFI	CCNGG	1 cut(s)	267
SduI	GDGCHC	1 cut(s)	222
SfaNI	GCATC	1 cut(s)	624
SfcI	CTRYAG	1 cut(s)	560
Sfr274I	CTCGAG	1 cut(s)	308
SfuI	TTCGAA	1 cut(s)	165
SinI	GGWCC	2 cut(s)	111, 198
SlaI	CTCGAG	1 cut(s)	308
SmlI	CTYRAG	2 cut(s)	308, 485
SmoI	CTYRAG	2 cut(s)	308, 485
Sse9I	AATT	2 cut(s)	229, 242
SsiI	CCGC	6 cut(s)	9, 33, 75, 415, 418, 491
StyD4I	CCNGG	1 cut(s)	265
StyI	CCWWGG	2 cut(s)	153, 373
TaqI	TCGA	3 cut(s)	90, 165, 309
TasI	AATT	2 cut(s)	229, 242
TauI	GCSGC	1 cut(s)	420
TfiI	GAWTC	3 cut(s)	58, 92, 647
TseI	GCWGC	4 cut(s)	382, 439, 559, 562
TspDTI	ATGAA	1 cut(s)	138
VpaK11BI	GGWCC	2 cut(s)	111, 198
XapI	RAATTY	1 cut(s)	242
XhoI	CTCGAG	1 cut(s)	308
XmnI	GAANNNNTTC	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.