Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001827

Physical Location & Seq

Genomic Coordinates Reverse (-)

2496713 .. 2499332

Gene Structure 2620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG036700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCAAGAAATGGTGTAATTTACATGTTATGTGTTTATTCAGGTTCATCCATGATGAGTTTCGAAGGTGTTCGGAGAGGAAATGGATCGAAGAGGTCCGTGTTCCAGCAATACGAGCACGAAGACAATTGTGATGAGGAATTCGATGAGTACTTTCATCAACCTGGAAAGAAGAGGCGGCTAACTGCTGATCAAGTCCAGTTCCTCGAGAAAAGCTTTGACTTGGAAAACAAGCTTGAACCAGAAAGGAAGATCCTGCTTGCAAAAGACCTTGGCTTGCAGCCTCGGCAGGTTGCGATTTGGTTCCAAAACCGCCGCGCAAGGTGGAAGACAAAGCAGCTGGAGAAGGACTATGATGTTTTGCAAGCCAACTATAATAGTCTCAAGGCGGATTGCGATAGCATTTGTAAAGAGAATGATAAGCTGAAAGCTGAGGTTGTTCAGCTATCGGACAGGCTGCGGCTGAAAGATGAAGAGAGGGCAAACTCAGAACAATCGGATACGAATAAATCAAATCAAGAACCGCAGCAGATGCCAATTGCTGAATCGGTCTCCTCCGAAGGTGAAGTATCCAAACTCTCGGTTGTGGCATGTAAGGAAGATCTTACCTCTGTCAAGAGTGATATATTTGACTCGGATAGCTCACATTACACCGATGGGGTTCACTCTTCTCTCTTAGAGCGTGGTGATTCTTCATATATTTTTGAACCTGATCAGTCTGATCTTTCCCAAGATGAAGAAGACAACTTGAGCAAAACCCTATTGCCACCATACATCTTTCCGAAGCTTGAAGATGTTGATTACACAGACCCTCCTGCAAATTCATGTAATTTCGGGTTCCCAGTGGAAGATCATGCCTTTTGGTCCTGGTCGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

292

Amino Acids

33.67

Weight (kDa)

4.73

Isoelectric Point (pI)

60.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	57 - 110	6.8e-17	Homeodomain
HALZ	PF02183	112 - 153	2.4e-16	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27045 AT1G27045 AT1G27045 AT1G27045 AT1G27045
fragaria_vesca	FvH4_4g32060 FvH4_5g15520 FvH4_5g15520 FvH4_5g15520
malus_domestica	MD06G1032300.v1.1 MD06G1187600.v1.1 MD13G1030700.v1.1 MD13G1079500.v1.1 MD14G1194000.v1.1 MD16G1079400.v1.1
prunus_persica	Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.5G185900_v2.0.a1
pyrus_communis	pycom06g16680 pycom13g06920 pycom14g16140 pycom16g06860
rosa_chinensis	RchiOBHm_Chr4g0440751 RchiOBHm_Chr7g0180571
rosa_laevigata	RLG00000005254 RLG00000006157
rosa_multiflora	Rmu_sc0000424.1_g000003 Rmu_sc0005690.1_g000017 Rmu_sc0008018.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272780 Rroxscaffold_5G00381510
rosa_rugosa	Rorug04G0327600 Rorug06G0433800
rosa_samantha	Rh4AG379400 Rh4BG392200 Rh4BG392300 Rh4CG406900 Rh4CG407000 Rh4DG386100 Rh7AG035200 Rh7BG035100 Rh7CG036700 Rh7DG035400
rosa_wichuraiana	Rw4G032630 Rw4G032660 Rw7G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	280
AccII	CGCG	1 cut(s)	318
AciI	CCGC	6 cut(s)	178, 313, 316, 389, 460, 524
AclWI	GGATC	2 cut(s)	94, 247
AcsI	RAATTY	2 cut(s)	140, 820
AfaI	GTAC	2 cut(s)	152, 875
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	3 cut(s)	239, 707, 791
AjnI	CCWGG	2 cut(s)	163, 866
AluBI	AGCT	8 cut(s)	216, 235, 340, 424, 431, 445, 642, 787
AluI	AGCT	8 cut(s)	216, 235, 340, 424, 431, 445, 642, 787
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	2 cut(s)	386, 556
AlwI	GGATC	2 cut(s)	94, 247
Ama87I	CYCGRG	1 cut(s)	206
ApeKI	GCWGC	4 cut(s)	280, 337, 457, 526
ApoI	RAATTY	2 cut(s)	140, 820
Asp700I	GAANNNNTTC	1 cut(s)	69
AspLEI	GCGC	1 cut(s)	320
AspS9I	GGNCC	2 cut(s)	96, 864
AsuHPI	GGTGA	2 cut(s)	575, 698
AsuII	TTCGAA	1 cut(s)	63
AvaI	CYCGRG	1 cut(s)	206
AvaII	GGWCC	2 cut(s)	96, 864
BbsI	GAAGAC	3 cut(s)	129, 335, 747
Bbv12I	GWGCWC	1 cut(s)	120
BbvCI	CCTCAGC	1 cut(s)	432
BbvI	GCAGC	4 cut(s)	292, 349, 444, 538
BccI	CCATC	1 cut(s)	650
BciT130I	CCWGG	2 cut(s)	165, 868
BciVI	GTATCC	2 cut(s)	493, 580
BclI	TGATCA	2 cut(s)	190, 712
BcoDI	GTCTC	2 cut(s)	386, 556
BfaI	CTAG	1 cut(s)	877
BfuAI	ACCTGC	1 cut(s)	280
BfuI	GTATCC	2 cut(s)	493, 580
BglII	AGATCT	1 cut(s)	601
BisI	GCNGC	7 cut(s)	179, 281, 316, 338, 458, 461, 527
BlsI	GCNGC	7 cut(s)	180, 282, 317, 339, 459, 462, 528
BmcAI	AGTACT	1 cut(s)	152
Bme1390I	CCNGG	2 cut(s)	165, 868
Bme18I	GGWCC	2 cut(s)	96, 864
BmeT110I	CYCGRG	1 cut(s)	206
BmgT120I	GGNCC	2 cut(s)	96, 864
BmiI	GGNNCC	2 cut(s)	305, 839
BmrFI	CCNGG	2 cut(s)	165, 868
BmrI	ACTGGG	1 cut(s)	836
BmsI	GCATC	1 cut(s)	522
BmuI	ACTGGG	1 cut(s)	836
BpiI	GAAGAC	3 cut(s)	129, 335, 747
BpmI	CTGGAG	1 cut(s)	362
Bpu10I	CCTNAGC	1 cut(s)	432
Bpu14I	TTCGAA	1 cut(s)	63
BpuEI	CTTGAG	2 cut(s)	368, 769
BsaI	GGTCTC	1 cut(s)	556
BsaJI	CCNNGG	2 cut(s)	271, 284
BsaXI	ACNNNNNCTCC	2 cut(s)	796, 826
Bse1I	ACTGG	2 cut(s)	199, 842
BseBI	CCWGG	2 cut(s)	165, 868
BseDI	CCNNGG	2 cut(s)	271, 284
BseGI	GGATG	1 cut(s)	47
BseMII	CTCAG	2 cut(s)	423, 501
BseNI	ACTGG	2 cut(s)	199, 842
BseRI	GAGGAG	1 cut(s)	544
BseXI	GCAGC	4 cut(s)	292, 349, 444, 538
Bsh1236I	CGCG	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	206
BsmAI	GTCTC	2 cut(s)	386, 556
Bso31I	GGTCTC	1 cut(s)	556
BsoBI	CYCGRG	1 cut(s)	206
Bsp119I	TTCGAA	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	7 cut(s)	86, 190, 252, 601, 712, 721, 850
BspACI	CCGC	6 cut(s)	178, 313, 316, 389, 460, 524
BspCNI	CTCAG	2 cut(s)	424, 500
BspFNI	CGCG	1 cut(s)	318
BspLI	GGNNCC	2 cut(s)	305, 839
BspMI	ACCTGC	1 cut(s)	280
BspPI	GGATC	2 cut(s)	94, 247
BspT104I	TTCGAA	1 cut(s)	63
BspTNI	GGTCTC	1 cut(s)	556
BsrI	ACTGG	2 cut(s)	199, 842
BssECI	CCNNGG	2 cut(s)	271, 284
BssMI	GATC	7 cut(s)	86, 190, 252, 601, 712, 721, 850
BssT1I	CCWWGG	1 cut(s)	271
Bst2UI	CCWGG	2 cut(s)	165, 868
Bst6I	CTCTTC	4 cut(s)	86, 167, 468, 673
BstAPI	GCANNNNNTGC	1 cut(s)	532
BstBI	TTCGAA	1 cut(s)	63
BstC8I	GCNNGC	3 cut(s)	261, 278, 366
BstDEI	CTNAG	3 cut(s)	432, 487, 676
BstF5I	GGATG	1 cut(s)	47
BstFNI	CGCG	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	320
BstKTI	GATC	7 cut(s)	89, 193, 255, 604, 715, 724, 853
BstMAI	GTCTC	2 cut(s)	386, 556
BstMBI	GATC	7 cut(s)	86, 190, 252, 601, 712, 721, 850
BstMWI	GCNNNNNNNGC	3 cut(s)	115, 286, 532
BstNI	CCWGG	2 cut(s)	165, 868
BstNSI	RCATGY	2 cut(s)	28, 594
BstSCI	CCNGG	2 cut(s)	163, 866
BstUI	CGCG	1 cut(s)	318
BstV1I	GCAGC	4 cut(s)	292, 349, 444, 538
BstV2I	GAAGAC	3 cut(s)	129, 335, 747
BstX2I	RGATCY	2 cut(s)	252, 601
BstYI	RGATCY	2 cut(s)	252, 601
BsuI	GTATCC	2 cut(s)	493, 580
BtsCI	GGATG	1 cut(s)	47
BtsIMutI	CAGTG	1 cut(s)	849
BveI	ACCTGC	1 cut(s)	280
Cac8I	GCNNGC	3 cut(s)	261, 278, 366
CfoI	GCGC	1 cut(s)	320
Cfr13I	GGNCC	2 cut(s)	96, 864
Csp6I	GTAC	2 cut(s)	151, 874
CviAII	CATG	5 cut(s)	25, 52, 591, 825, 854
CviQI	GTAC	2 cut(s)	151, 874
DdeI	CTNAG	3 cut(s)	432, 487, 676
DpnI	GATC	7 cut(s)	88, 192, 254, 603, 714, 723, 852
DpnII	GATC	7 cut(s)	86, 190, 252, 601, 712, 721, 850
Eam1104I	CTCTTC	4 cut(s)	86, 167, 468, 673
EarI	CTCTTC	4 cut(s)	86, 167, 468, 673
EciI	GGCGGA	1 cut(s)	404
Eco130I	CCWWGG	1 cut(s)	271
Eco31I	GGTCTC	1 cut(s)	556
Eco47I	GGWCC	2 cut(s)	96, 864
Eco88I	CYCGRG	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	140
EcoRII	CCWGG	2 cut(s)	163, 866
EcoT14I	CCWWGG	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	5 cut(s)	28, 55, 594, 828, 857
FatI	CATG	5 cut(s)	24, 51, 590, 824, 853
FbaI	TGATCA	2 cut(s)	190, 712
Fnu4HI	GCNGC	7 cut(s)	179, 281, 316, 338, 458, 461, 527
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	7 cut(s)	179, 281, 316, 338, 458, 461, 527
FspBI	CTAG	1 cut(s)	877
GlaI	GCGC	1 cut(s)	319
GluI	GCNGC	7 cut(s)	179, 281, 316, 338, 458, 461, 527
GsuI	CTGGAG	1 cut(s)	362
HhaI	GCGC	1 cut(s)	320
Hin1II	CATG	5 cut(s)	28, 55, 594, 828, 857
Hin6I	GCGC	1 cut(s)	318
HinP1I	GCGC	1 cut(s)	318
HindIII	AAGCTT	3 cut(s)	214, 233, 785
HinfI	GANTC	3 cut(s)	545, 632, 689
HphI	GGTGA	2 cut(s)	575, 698
Hpy166II	GTNNAC	1 cut(s)	664
Hpy188I	TCNGA	8 cut(s)	75, 451, 490, 499, 559, 637, 721, 783
Hpy188III	TCNNGA	3 cut(s)	208, 518, 616
Hpy8I	GTNNAC	1 cut(s)	664
HpyAV	CCTTC	3 cut(s)	59, 340, 554
HpyCH4V	TGCA	4 cut(s)	263, 280, 364, 818
HpyF10VI	GCNNNNNNNGC	3 cut(s)	115, 286, 532
HpyF3I	CTNAG	3 cut(s)	432, 487, 676
Hsp92II	CATG	5 cut(s)	28, 55, 594, 828, 857
HspAI	GCGC	1 cut(s)	318
Ksp22I	TGATCA	2 cut(s)	190, 712
Kzo9I	GATC	7 cut(s)	86, 190, 252, 601, 712, 721, 850
Lsp1109I	GCAGC	4 cut(s)	292, 349, 444, 538
LweI	GCATC	1 cut(s)	522
MaeI	CTAG	1 cut(s)	877
MalI	GATC	7 cut(s)	88, 192, 254, 603, 714, 723, 852
MboI	GATC	7 cut(s)	86, 190, 252, 601, 712, 721, 850
MfeI	CAATTG	2 cut(s)	127, 537
MflI	RGATCY	2 cut(s)	252, 601
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	6 cut(s)	18, 127, 140, 537, 820, 829
MlyI	GAGTC	1 cut(s)	626
MroXI	GAANNNNTTC	1 cut(s)	69
MspA1I	CMGCKG	1 cut(s)	340
MspR9I	CCNGG	2 cut(s)	165, 868
MunI	CAATTG	2 cut(s)	127, 537
MvaI	CCWGG	2 cut(s)	165, 868
MvnI	CGCG	1 cut(s)	318
MwoI	GCNNNNNNNGC	3 cut(s)	115, 286, 532
NdeII	GATC	7 cut(s)	86, 190, 252, 601, 712, 721, 850
NlaIII	CATG	5 cut(s)	28, 55, 594, 828, 857
NlaIV	GGNNCC	2 cut(s)	305, 839
NmeAIII	GCCGAG	1 cut(s)	265
NspI	RCATGY	2 cut(s)	28, 594
NspV	TTCGAA	1 cut(s)	63
PaeR7I	CTCGAG	1 cut(s)	206
PciI	ACATGT	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	545, 689
PkrI	GCNGC	7 cut(s)	180, 282, 317, 339, 459, 462, 528
PleI	GAGTC	1 cut(s)	626
PpsI	GAGTC	1 cut(s)	626
PscI	ACATGT	1 cut(s)	24
Psp6I	CCWGG	2 cut(s)	163, 866
PspGI	CCWGG	2 cut(s)	163, 866
PspN4I	GGNNCC	2 cut(s)	305, 839
PspPI	GGNCC	2 cut(s)	96, 864
PsuI	RGATCY	2 cut(s)	252, 601
PvuII	CAGCTG	1 cut(s)	340
RsaI	GTAC	2 cut(s)	152, 875
RsaNI	GTAC	2 cut(s)	151, 874
SatI	GCNGC	7 cut(s)	179, 281, 316, 338, 458, 461, 527
Sau3AI	GATC	7 cut(s)	86, 190, 252, 601, 712, 721, 850
Sau96I	GGNCC	2 cut(s)	96, 864
ScaI	AGTACT	1 cut(s)	152
SchI	GAGTC	1 cut(s)	626
ScrFI	CCNGG	2 cut(s)	165, 868
SduI	GDGCHC	1 cut(s)	120
SfaNI	GCATC	1 cut(s)	522
Sfr274I	CTCGAG	1 cut(s)	206
SfuI	TTCGAA	1 cut(s)	63
SinI	GGWCC	2 cut(s)	96, 864
SlaI	CTCGAG	1 cut(s)	206
SmlI	CTYRAG	3 cut(s)	206, 383, 748
SmoI	CTYRAG	3 cut(s)	206, 383, 748
Sse9I	AATT	6 cut(s)	18, 127, 140, 537, 820, 829
SsiI	CCGC	6 cut(s)	178, 313, 316, 389, 460, 524
SspMI	CTAG	1 cut(s)	877
StyD4I	CCNGG	2 cut(s)	163, 866
StyI	CCWWGG	1 cut(s)	271
TaqI	TCGA	4 cut(s)	63, 89, 144, 207
TaqII	GACCGA	1 cut(s)	538
TasI	AATT	6 cut(s)	18, 127, 140, 537, 820, 829
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	3 cut(s)	181, 318, 463
TfiI	GAWTC	2 cut(s)	545, 689
TscAI	CASTG	1 cut(s)	849
TseI	GCWGC	4 cut(s)	280, 337, 457, 526
TspDTI	ATGAA	6 cut(s)	36, 146, 486, 684, 750, 813
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	1 cut(s)	849
VpaK11BI	GGWCC	2 cut(s)	96, 864
XapI	RAATTY	2 cut(s)	140, 820
XceI	RCATGY	2 cut(s)	28, 594
XhoI	CTCGAG	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	69
XspI	CTAG	1 cut(s)	877
ZrmI	AGTACT	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.