Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001827

Physical Location & Seq

Genomic Coordinates Reverse (-)

2637359 .. 2639368

Gene Structure 2010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG035400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGATGAGTTTCGAAGGTGTTCGGAGAGGAAATGGATTGAAGAGGTCCGCGTTCCAGCAATACGAGCACGAAGACAATTGTGATGAGGAATTCGATGAGTACTTTCATCAACCTGGAAAGAAGAGGCGGCTAACTGCTGATCAAGTCCAGTTCCTCGAGAAAAGCTTTGACTTGGAAAACAAGCTTGAACCAGAAAGGAAGATCCTGCTTGCAAAAGACCTTGGCTTGCAGCCTCGGCAGGTTGCGATTTGGTTCCAAAACCGCCGCGCAAGGTGGAAGACAAAGCAGCTGGAGAAGGACTATGATGTTTTGCAAGCCGACTATAATAGTCTCAAGGCGGATTGCGATAGCATTTGTAAAGAGAATGATAAGCTGAAAGCTGAGGTTGTTCAGCTATCGGACAGGCTGCGGCTGAAAGACGAAGAGATGGCAAACTCAGAACAATCGGATACGAATAAATCAAATCAAGAACCACAGCAGATGCCAATTGCTGAATCGGTCTCCTCCGAAGGTGAAGTATCCAAACTCTCGGTTGTGGCATGTAAGGAAGATCTGACCTCAGTCAAGAGTGATATATTTGACTCGGATAGCTCACATTACACCGATGGGGTTCACTCTTCTCTCTTAGAGCGTGGTGATTCTTCATATATTTTTGAACCCGATCAGTCTGATCTTTCCCAAGATGAAGAAGACAACTTGAGCAAAACCCTATTGCCACCATACATCTTTCCGAAGCTTGAAGATGTTGATTACACAGACCCTCCTGCAAATTCATGTAATTTCGGGTTCCCAGTGGAAGATCATGCCTTTTGGTCCTGGTCTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

275

Amino Acids

31.81

Weight (kDa)

4.62

Isoelectric Point (pI)

60.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	40 - 93	6.1e-17	Homeodomain
HALZ	PF02183	95 - 136	6e-16	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27045 AT1G27045 AT1G27045 AT1G27045 AT1G27045
fragaria_vesca	FvH4_4g32060 FvH4_5g15520 FvH4_5g15520 FvH4_5g15520
malus_domestica	MD06G1032300.v1.1 MD06G1187600.v1.1 MD13G1030700.v1.1 MD13G1079500.v1.1 MD14G1194000.v1.1 MD16G1079400.v1.1
prunus_persica	Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.5G185900_v2.0.a1
pyrus_communis	pycom06g16680 pycom13g06920 pycom14g16140 pycom16g06860
rosa_chinensis	RchiOBHm_Chr4g0440751 RchiOBHm_Chr7g0180571
rosa_laevigata	RLG00000005254 RLG00000006157
rosa_multiflora	Rmu_sc0000424.1_g000003 Rmu_sc0005690.1_g000017 Rmu_sc0008018.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272780 Rroxscaffold_5G00381510
rosa_rugosa	Rorug04G0327600 Rorug06G0433800
rosa_samantha	Rh4AG379400 Rh4BG392200 Rh4BG392300 Rh4CG406900 Rh4CG407000 Rh4DG386100 Rh7AG035200 Rh7BG035100 Rh7CG036700 Rh7DG035400
rosa_wichuraiana	Rw4G032630 Rw4G032660 Rw7G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	229
AccII	CGCG	2 cut(s)	50, 267
AciI	CCGC	6 cut(s)	48, 127, 262, 265, 338, 409
AclWI	GGATC	1 cut(s)	196
AcsI	RAATTY	2 cut(s)	89, 769
AfaI	GTAC	1 cut(s)	101
AgsI	TTSAA	4 cut(s)	40, 188, 656, 740
AjnI	CCWGG	2 cut(s)	112, 815
AluBI	AGCT	8 cut(s)	165, 184, 289, 373, 380, 394, 591, 736
AluI	AGCT	8 cut(s)	165, 184, 289, 373, 380, 394, 591, 736
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	2 cut(s)	335, 505
AlwI	GGATC	1 cut(s)	196
Ama87I	CYCGRG	1 cut(s)	155
ApeKI	GCWGC	3 cut(s)	229, 286, 406
ApoI	RAATTY	2 cut(s)	89, 769
Asp700I	GAANNNNTTC	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	2 cut(s)	45, 813
AsuHPI	GGTGA	2 cut(s)	524, 647
AsuII	TTCGAA	1 cut(s)	12
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	2 cut(s)	45, 813
BbsI	GAAGAC	3 cut(s)	78, 284, 696
Bbv12I	GWGCWC	1 cut(s)	69
BbvCI	CCTCAGC	1 cut(s)	381
BbvI	GCAGC	3 cut(s)	241, 298, 393
BccI	CCATC	2 cut(s)	421, 599
BciT130I	CCWGG	2 cut(s)	114, 817
BciVI	GTATCC	2 cut(s)	442, 529
BclI	TGATCA	1 cut(s)	139
BcoDI	GTCTC	2 cut(s)	335, 505
BfaI	CTAG	1 cut(s)	826
BfuAI	ACCTGC	1 cut(s)	229
BfuI	GTATCC	2 cut(s)	442, 529
BglII	AGATCT	1 cut(s)	550
BisI	GCNGC	6 cut(s)	128, 230, 265, 287, 407, 410
BlsI	GCNGC	6 cut(s)	129, 231, 266, 288, 408, 411
BmcAI	AGTACT	1 cut(s)	101
Bme1390I	CCNGG	2 cut(s)	114, 817
Bme18I	GGWCC	2 cut(s)	45, 813
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	2 cut(s)	45, 813
BmiI	GGNNCC	2 cut(s)	254, 788
BmrFI	CCNGG	2 cut(s)	114, 817
BmrI	ACTGGG	1 cut(s)	785
BmsI	GCATC	1 cut(s)	471
BmuI	ACTGGG	1 cut(s)	785
BoxI	GACNNNNGTC	1 cut(s)	560
BpiI	GAAGAC	3 cut(s)	78, 284, 696
BpmI	CTGGAG	1 cut(s)	311
Bpu10I	CCTNAGC	1 cut(s)	381
Bpu14I	TTCGAA	1 cut(s)	12
BpuEI	CTTGAG	2 cut(s)	317, 718
BsaI	GGTCTC	1 cut(s)	505
BsaJI	CCNNGG	2 cut(s)	220, 233
BsaXI	ACNNNNNCTCC	2 cut(s)	745, 775
Bse1I	ACTGG	2 cut(s)	148, 791
BseBI	CCWGG	2 cut(s)	114, 817
BseDI	CCNNGG	2 cut(s)	220, 233
BseMII	CTCAG	3 cut(s)	372, 450, 573
BseNI	ACTGG	2 cut(s)	148, 791
BseRI	GAGGAG	1 cut(s)	493
BseXI	GCAGC	3 cut(s)	241, 298, 393
Bsh1236I	CGCG	2 cut(s)	50, 267
BsiHKAI	GWGCWC	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	155
BsmAI	GTCTC	2 cut(s)	335, 505
Bso31I	GGTCTC	1 cut(s)	505
BsoBI	CYCGRG	1 cut(s)	155
Bsp119I	TTCGAA	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	6 cut(s)	139, 201, 550, 661, 670, 799
BspACI	CCGC	6 cut(s)	48, 127, 262, 265, 338, 409
BspCNI	CTCAG	3 cut(s)	373, 449, 572
BspFNI	CGCG	2 cut(s)	50, 267
BspLI	GGNNCC	2 cut(s)	254, 788
BspMI	ACCTGC	1 cut(s)	229
BspPI	GGATC	1 cut(s)	196
BspT104I	TTCGAA	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	505
BsrI	ACTGG	2 cut(s)	148, 791
BssECI	CCNNGG	2 cut(s)	220, 233
BssMI	GATC	6 cut(s)	139, 201, 550, 661, 670, 799
BssT1I	CCWWGG	1 cut(s)	220
Bst2UI	CCWGG	2 cut(s)	114, 817
Bst6I	CTCTTC	4 cut(s)	35, 116, 417, 622
BstBI	TTCGAA	1 cut(s)	12
BstC8I	GCNNGC	3 cut(s)	210, 227, 315
BstDEI	CTNAG	4 cut(s)	381, 436, 559, 625
BstFNI	CGCG	2 cut(s)	50, 267
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	6 cut(s)	142, 204, 553, 664, 673, 802
BstMAI	GTCTC	2 cut(s)	335, 505
BstMBI	GATC	6 cut(s)	139, 201, 550, 661, 670, 799
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 235
BstNI	CCWGG	2 cut(s)	114, 817
BstNSI	RCATGY	1 cut(s)	543
BstPAI	GACNNNNGTC	1 cut(s)	560
BstSCI	CCNGG	2 cut(s)	112, 815
BstUI	CGCG	2 cut(s)	50, 267
BstV1I	GCAGC	3 cut(s)	241, 298, 393
BstV2I	GAAGAC	3 cut(s)	78, 284, 696
BstX2I	RGATCY	2 cut(s)	201, 550
BstYI	RGATCY	2 cut(s)	201, 550
BsuI	GTATCC	2 cut(s)	442, 529
BtsIMutI	CAGTG	1 cut(s)	798
BveI	ACCTGC	1 cut(s)	229
Cac8I	GCNNGC	3 cut(s)	210, 227, 315
CfoI	GCGC	1 cut(s)	269
Cfr13I	GGNCC	2 cut(s)	45, 813
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	3 cut(s)	540, 774, 803
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	4 cut(s)	381, 436, 559, 625
DpnI	GATC	6 cut(s)	141, 203, 552, 663, 672, 801
DpnII	GATC	6 cut(s)	139, 201, 550, 661, 670, 799
Eam1104I	CTCTTC	4 cut(s)	35, 116, 417, 622
EarI	CTCTTC	4 cut(s)	35, 116, 417, 622
EciI	GGCGGA	1 cut(s)	353
Eco130I	CCWWGG	1 cut(s)	220
Eco31I	GGTCTC	1 cut(s)	505
Eco47I	GGWCC	2 cut(s)	45, 813
Eco88I	CYCGRG	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	89
EcoRII	CCWGG	2 cut(s)	112, 815
EcoT14I	CCWWGG	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	3 cut(s)	543, 777, 806
FaiI	YATR	9 cut(s)	303, 324, 541, 575, 646, 648, 721, 775, 804
FatI	CATG	3 cut(s)	539, 773, 802
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	6 cut(s)	128, 230, 265, 287, 407, 410
Fsp4HI	GCNGC	6 cut(s)	128, 230, 265, 287, 407, 410
FspBI	CTAG	1 cut(s)	826
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	6 cut(s)	128, 230, 265, 287, 407, 410
GsuI	CTGGAG	1 cut(s)	311
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	3 cut(s)	543, 777, 806
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HindIII	AAGCTT	3 cut(s)	163, 182, 734
HinfI	GANTC	3 cut(s)	494, 581, 638
HphI	GGTGA	2 cut(s)	524, 647
Hpy166II	GTNNAC	1 cut(s)	613
Hpy188I	TCNGA	9 cut(s)	24, 400, 439, 448, 508, 555, 586, 670, 732
Hpy188III	TCNNGA	3 cut(s)	157, 467, 565
Hpy8I	GTNNAC	1 cut(s)	613
HpyAV	CCTTC	3 cut(s)	8, 289, 503
HpyCH4V	TGCA	4 cut(s)	212, 229, 313, 767
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 235
HpyF3I	CTNAG	4 cut(s)	381, 436, 559, 625
Hsp92II	CATG	3 cut(s)	543, 777, 806
HspAI	GCGC	1 cut(s)	267
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	6 cut(s)	139, 201, 550, 661, 670, 799
Lsp1109I	GCAGC	3 cut(s)	241, 298, 393
LweI	GCATC	1 cut(s)	471
MaeI	CTAG	1 cut(s)	826
MalI	GATC	6 cut(s)	141, 203, 552, 663, 672, 801
MboI	GATC	6 cut(s)	139, 201, 550, 661, 670, 799
MfeI	CAATTG	2 cut(s)	76, 486
MflI	RGATCY	2 cut(s)	201, 550
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	5 cut(s)	76, 89, 486, 769, 778
MlyI	GAGTC	1 cut(s)	575
MroXI	GAANNNNTTC	1 cut(s)	18
MspA1I	CMGCKG	1 cut(s)	289
MspR9I	CCNGG	2 cut(s)	114, 817
MunI	CAATTG	2 cut(s)	76, 486
MvaI	CCWGG	2 cut(s)	114, 817
MvnI	CGCG	2 cut(s)	50, 267
MwoI	GCNNNNNNNGC	2 cut(s)	64, 235
NdeII	GATC	6 cut(s)	139, 201, 550, 661, 670, 799
NlaIII	CATG	3 cut(s)	543, 777, 806
NlaIV	GGNNCC	2 cut(s)	254, 788
NmeAIII	GCCGAG	1 cut(s)	214
NspI	RCATGY	1 cut(s)	543
NspV	TTCGAA	1 cut(s)	12
PaeR7I	CTCGAG	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	2 cut(s)	494, 638
PkrI	GCNGC	6 cut(s)	129, 231, 266, 288, 408, 411
PleI	GAGTC	1 cut(s)	575
PpsI	GAGTC	1 cut(s)	575
PshAI	GACNNNNGTC	1 cut(s)	560
Psp6I	CCWGG	2 cut(s)	112, 815
PspGI	CCWGG	2 cut(s)	112, 815
PspN4I	GGNNCC	2 cut(s)	254, 788
PspPI	GGNCC	2 cut(s)	45, 813
PsuI	RGATCY	2 cut(s)	201, 550
PvuII	CAGCTG	1 cut(s)	289
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SatI	GCNGC	6 cut(s)	128, 230, 265, 287, 407, 410
Sau3AI	GATC	6 cut(s)	139, 201, 550, 661, 670, 799
Sau96I	GGNCC	2 cut(s)	45, 813
ScaI	AGTACT	1 cut(s)	101
SchI	GAGTC	1 cut(s)	575
ScrFI	CCNGG	2 cut(s)	114, 817
SduI	GDGCHC	1 cut(s)	69
SfaNI	GCATC	1 cut(s)	471
Sfr274I	CTCGAG	1 cut(s)	155
SfuI	TTCGAA	1 cut(s)	12
SinI	GGWCC	2 cut(s)	45, 813
SlaI	CTCGAG	1 cut(s)	155
SmlI	CTYRAG	3 cut(s)	155, 332, 697
SmoI	CTYRAG	3 cut(s)	155, 332, 697
Sse9I	AATT	5 cut(s)	76, 89, 486, 769, 778
SsiI	CCGC	6 cut(s)	48, 127, 262, 265, 338, 409
SspMI	CTAG	1 cut(s)	826
StyD4I	CCNGG	2 cut(s)	112, 815
StyI	CCWWGG	1 cut(s)	220
TaqI	TCGA	3 cut(s)	12, 93, 156
TaqII	GACCGA	1 cut(s)	487
TasI	AATT	5 cut(s)	76, 89, 486, 769, 778
TatI	WGTACW	1 cut(s)	99
TauI	GCSGC	3 cut(s)	130, 267, 412
TfiI	GAWTC	2 cut(s)	494, 638
TscAI	CASTG	1 cut(s)	798
TseI	GCWGC	3 cut(s)	229, 286, 406
TspDTI	ATGAA	4 cut(s)	95, 633, 699, 762
TspRI	CASTG	1 cut(s)	798
VpaK11BI	GGWCC	2 cut(s)	45, 813
XapI	RAATTY	2 cut(s)	89, 769
XceI	RCATGY	1 cut(s)	543
XhoI	CTCGAG	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	18
XspI	CTAG	1 cut(s)	826
ZrmI	AGTACT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.