Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001827

Physical Location & Seq

Genomic Coordinates Reverse (-)

56899130 .. 56903443

Gene Structure 4314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0433800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1668 bp

ATGGCCACGGCTGCCGATTCCTCCGCCAATCACCACTCTCCGAGGCCTGATTTTGACGCCGGCGGCGGCGGCGTCAATAGGCGAACCACTCCCTGGGCCAAGGTTGTACGAGGGGATTCGGAGTCGTCGTCGATATCACCCAATCATCAATCTCCGCCGTCCCCGCCGCCGCCGCCTTCCATCTCTGTACCGGAGCAAAACCCCTCTTCTAATTGCTCCCCATCGGCGGTGGCTCGTTCTTCGCCTTCTCCGCCGCCGCCAGCGGATGCTGAGAGCGGCGATGGACACAACGGCAATGCGGCTCGGATGGCAAAGAAGCCAGCTTGGAACAAGCCGACATCGTTGGAGGTTGGTCCTGGTCCTGTAATGGGTGCGGTTGCTTGGCCTGCTTTGTCCGAGTCCGCTAGGGCTTCGCCTAAATTGCCTGCTGATTCCTCTTCCAAGACCGTCACAGATGTGGCAGTTCCAGTGCCTGTATCTCCGGGACCTGTTATAACACCTTCACCCAACTCCAAAAAGCACCATGGTAACCCTGCAAACACTAACCCAGCATCAAATCATGCAATGCCAGCTCGACAAAGACCTACAAAACGTGGTGGCGGGAGTAGCACAGGGGTTACAAGTGCACATGCACATGCACACGCACACAGTGGTTTTGCACACCCTCCCCCACCGCCGCCACCACCGCCATTCCCTGTTTTCCCTATACCAAATGGTTATGGTACTCTGGTGCCTGCCATGCCTGATCCTTCTCCAAGAGACCCCTCGTTCCGTGGCAGCAATTGGGATGCTAGACCGATTGGTTTTGGGCCTCAAACACACCAAGTAAACGATCACAGGAATTCTTCCCGCAGGGGGAATTTTGGTTCCCACCCGCGTGGAGATGGTCCTTACCACAACAATTATGGGAGCAAGCGTGATCACCAAGATCGTGGGAATTTTATGAATGGCAGAGATGTCCAGATGCATCAGCAGCAGAGACCTCCTCCAAGGGGCCTTGTAAGACCAGTACCACCAAGTAGTGCTGCATTTACCCCCCAGCCGGCAAGACCATTTGCCAACCCCATGGGTTTTCCGGAGTTTGTTTACATCCCTACATTGCCTTTGGATCCCATTAGAATGCCATTCATTCCCCATGCACCACATCCTGCAATGTTTATTCCTGTTGCAGAATCTCCTATGCCTTCTCTTCCTTCCTTAATAGTCAACCAAATAGATTATTACTTCAGTGATACTAACCTGATAAGAGATGAATATTTGCGGTCAAACATGGATGCTCAAGGATGGGTTCCCATATCTTTAATAGCAAACTTTCCTCGAGTTAAGAGTCTGACAACCAATGTCCAGTTGATAATGGATTCCTTGAGAGCTTCAAGTATTGTTGAAGTACAGGATGAGAAGGTGAGGAGGCGTAATGATTGGACGAAATGGATATCAACTACTGGTCGGCTTGCATCCGAATCAGGCTCATCGTCCAATGATGTACAAAGTTCTGACATGCTTTCAACTTCTTTTCAAAAGATGACAGTGGATGATGCGTCTACTAGCCAAAGTAGTATGGCAGGTAACCCAGATGCAAACTCTAAGGCTATTCCACAGAACTTTTCTACCGAGTCAGCTGGAGTTTCACAGCTCCCTAACGGGGACATCACTCAAAACAATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

555

Amino Acids

59.12

Weight (kDa)

9.38

Isoelectric Point (pI)

65.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
La	PF05383	401 - 456	7.2e-24	La domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27045 AT1G27045 AT1G27045 AT1G27045 AT1G27045
fragaria_vesca	FvH4_4g32060 FvH4_5g15520 FvH4_5g15520 FvH4_5g15520
malus_domestica	MD06G1032300.v1.1 MD06G1187600.v1.1 MD13G1030700.v1.1 MD13G1079500.v1.1 MD14G1194000.v1.1 MD16G1079400.v1.1
prunus_persica	Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.5G185900_v2.0.a1
pyrus_communis	pycom06g16680 pycom13g06920 pycom14g16140 pycom16g06860
rosa_chinensis	RchiOBHm_Chr4g0440751 RchiOBHm_Chr7g0180571
rosa_laevigata	RLG00000005254 RLG00000006157
rosa_multiflora	Rmu_sc0000424.1_g000003 Rmu_sc0005690.1_g000017 Rmu_sc0008018.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272780 Rroxscaffold_5G00381510
rosa_rugosa	Rorug04G0327600 Rorug06G0433800
rosa_samantha	Rh4AG379400 Rh4BG392200 Rh4BG392300 Rh4CG406900 Rh4CG407000 Rh4DG386100 Rh7AG035200 Rh7BG035100 Rh7CG036700 Rh7DG035400
rosa_wichuraiana	Rw4G032630 Rw4G032660 Rw7G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	494
Acc36I	ACCTGC	1 cut(s)	1553
AccB1I	GGYRCC	1 cut(s)	730
AccB7I	CCANNNNNTGG	1 cut(s)	93
AccBSI	CCGCTC	1 cut(s)	276
AccI	GTMKAC	1 cut(s)	1541
AccII	CGCG	1 cut(s)	877
AccIII	TCCGGA	1 cut(s)	1075
AclWI	GGATC	3 cut(s)	740, 1103, 1116
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	841, 859, 937
AcuI	CTGAAG	1 cut(s)	1210
AcyI	GRCGYC	2 cut(s)	57, 72
AdeI	CACNNNGTG	1 cut(s)	650
AfaI	GTAC	6 cut(s)	108, 189, 724, 1011, 1389, 1485
AfiI	CCNNNNNNNGG	7 cut(s)	93, 226, 368, 855, 992, 1042, 1642
AgsI	TTSAA	4 cut(s)	1374, 1385, 1506, 1517
AjnI	CCWGG	2 cut(s)	92, 355
AleI	CACNNNNGTG	2 cut(s)	455, 876
AloI	GAACNNNNNNTCC	2 cut(s)	850, 882
AluBI	AGCT	5 cut(s)	323, 572, 1370, 1619, 1633
AluI	AGCT	5 cut(s)	323, 572, 1370, 1619, 1633
Alw21I	GWGCWC	1 cut(s)	628
Alw26I	GTCTC	2 cut(s)	753, 973
Alw44I	GTGCAC	1 cut(s)	624
AlwI	GGATC	3 cut(s)	740, 1103, 1116
AlwNI	CAGNNNCTG	1 cut(s)	473
Ama87I	CYCGRG	1 cut(s)	1317
Aor13HI	TCCGGA	1 cut(s)	1075
AoxI	GGCC	6 cut(s)	3, 44, 96, 383, 809, 994
ApaLI	GTGCAC	1 cut(s)	624
ApeKI	GCWGC	4 cut(s)	11, 777, 973, 1025
ApoI	RAATTY	3 cut(s)	841, 859, 937
AspS9I	GGNCC	7 cut(s)	96, 353, 359, 485, 809, 887, 994
AsuC2I	CCSGG	1 cut(s)	483
AsuHPI	GGTGA	5 cut(s)	23, 129, 495, 914, 1414
AvaI	CYCGRG	1 cut(s)	1317
AvaII	GGWCC	4 cut(s)	353, 359, 485, 887
BaeGI	GKGCMC	1 cut(s)	628
BaeI	ACNNNNGTAYC	2 cut(s)	714, 747
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	1108
BanI	GGYRCC	1 cut(s)	730
Bbv12I	GWGCWC	1 cut(s)	628
BbvI	GCAGC	3 cut(s)	789, 985, 1012
BccI	CCATC	6 cut(s)	188, 229, 275, 301, 878, 1278
BceAI	ACGGC	3 cut(s)	24, 142, 307
BciT130I	CCWGG	2 cut(s)	94, 357
BclI	TGATCA	1 cut(s)	919
BcnI	CCSGG	1 cut(s)	483
BcoDI	GTCTC	2 cut(s)	753, 973
BfaI	CTAG	3 cut(s)	405, 792, 1545
BfuAI	ACCTGC	1 cut(s)	1553
Bme1390I	CCNGG	3 cut(s)	94, 357, 483
Bme18I	GGWCC	4 cut(s)	353, 359, 485, 887
BmeT110I	CYCGRG	1 cut(s)	1317
BmgT120I	GGNCC	7 cut(s)	96, 353, 359, 485, 809, 887, 994
BmiI	GGNNCC	6 cut(s)	486, 732, 868, 995, 1110, 1290
BmrFI	CCNGG	3 cut(s)	94, 357, 483
BmsI	GCATC	9 cut(s)	256, 560, 778, 954, 976, 1264, 1463, 1525, 1564
BplI	GAGNNNNNCTC	2 cut(s)	970, 1002
BpmI	CTGGAG	1 cut(s)	1641
BpuEI	CTTGAG	2 cut(s)	1263, 1384
BpuMI	CCSGG	1 cut(s)	483
BsaHI	GRCGYC	2 cut(s)	57, 72
BsaI	GGTCTC	2 cut(s)	753, 973
BsaJI	CCNNGG	9 cut(s)	6, 41, 92, 93, 99, 523, 772, 989, 1065
BsaWI	WCCGGW	2 cut(s)	190, 1075
BsaXI	ACNNNNNCTCC	4 cut(s)	113, 143, 901, 931
Bsc4I	CCNNNNNNNGG	7 cut(s)	93, 226, 368, 855, 992, 1042, 1642
Bse118I	RCCGGY	2 cut(s)	59, 1042
Bse1I	ACTGG	4 cut(s)	467, 1007, 1345, 1447
Bse3DI	GCAATG	4 cut(s)	301, 570, 1097, 1158
BseAI	TCCGGA	1 cut(s)	1075
BseBI	CCWGG	2 cut(s)	94, 357
BseDI	CCNNGG	9 cut(s)	6, 41, 92, 93, 99, 523, 772, 989, 1065
BseLI	CCNNNNNNNGG	7 cut(s)	93, 226, 368, 855, 992, 1042, 1642
BseMI	GCAATG	4 cut(s)	301, 570, 1097, 1158
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	4 cut(s)	467, 1007, 1345, 1447
BseRI	GAGGAG	2 cut(s)	975, 1420
BseSI	GKGCMC	1 cut(s)	628
BseXI	GCAGC	3 cut(s)	789, 985, 1012
BseYI	CCCAGC	2 cut(s)	547, 1038
Bsh1236I	CGCG	1 cut(s)	877
BshFI	GGCC	6 cut(s)	5, 46, 98, 385, 811, 996
BshNI	GGYRCC	1 cut(s)	730
BsiHKAI	GWGCWC	1 cut(s)	628
BsiHKCI	CYCGRG	1 cut(s)	1317
BsiSI	CCGG	5 cut(s)	60, 191, 482, 1043, 1076
BslFI	GGGAC	3 cut(s)	145, 498, 1658
BslI	CCNNNNNNNGG	7 cut(s)	93, 226, 368, 855, 992, 1042, 1642
BsmAI	GTCTC	2 cut(s)	753, 973
BsmFI	GGGAC	3 cut(s)	145, 498, 1658
BsmI	GAATGC	1 cut(s)	1125
BsnI	GGCC	6 cut(s)	5, 46, 98, 385, 811, 996
Bso31I	GGTCTC	2 cut(s)	753, 973
BsoBI	CYCGRG	1 cut(s)	1317
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp13I	TCCGGA	1 cut(s)	1075
Bsp1407I	TGTACA	1 cut(s)	1483
Bsp143I	GATC	5 cut(s)	745, 832, 919, 928, 1108
Bsp19I	CCATGG	2 cut(s)	523, 1065
BspANI	GGCC	6 cut(s)	5, 46, 98, 385, 811, 996
BspCNI	CTCAG	1 cut(s)	262
BspEI	TCCGGA	1 cut(s)	1075
BspFNI	CGCG	1 cut(s)	877
BspLI	GGNNCC	6 cut(s)	486, 732, 868, 995, 1110, 1290
BspMI	ACCTGC	1 cut(s)	1553
BspPI	GGATC	3 cut(s)	740, 1103, 1116
BspT107I	GGYRCC	1 cut(s)	730
BspTNI	GGTCTC	2 cut(s)	753, 973
BsrBI	CCGCTC	1 cut(s)	276
BsrDI	GCAATG	4 cut(s)	301, 570, 1097, 1158
BsrFI	RCCGGY	2 cut(s)	59, 1042
BsrGI	TGTACA	1 cut(s)	1483
BsrI	ACTGG	4 cut(s)	467, 1007, 1345, 1447
BssAI	RCCGGY	2 cut(s)	59, 1042
BssECI	CCNNGG	9 cut(s)	6, 41, 92, 93, 99, 523, 772, 989, 1065
BssMI	GATC	5 cut(s)	745, 832, 919, 928, 1108
BssNI	GRCGYC	2 cut(s)	57, 72
BssT1I	CCWWGG	4 cut(s)	99, 523, 989, 1065
Bst2UI	CCWGG	2 cut(s)	94, 357
Bst4CI	ACNGT	3 cut(s)	448, 650, 1528
Bst6I	CTCTTC	3 cut(s)	211, 442, 1194
BstACI	GRCGYC	2 cut(s)	57, 72
BstAUI	TGTACA	1 cut(s)	1483
BstDEI	CTNAG	2 cut(s)	270, 1584
BstDSI	CCRYGG	4 cut(s)	6, 523, 772, 1065
BstEII	GGTNACC	2 cut(s)	527, 1565
BstFNI	CGCG	1 cut(s)	877
BstKTI	GATC	5 cut(s)	748, 835, 922, 931, 1111
BstMAI	GTCTC	2 cut(s)	753, 973
BstMBI	GATC	5 cut(s)	745, 832, 919, 928, 1108
BstNI	CCWGG	2 cut(s)	94, 357
BstNSI	RCATGY	3 cut(s)	632, 638, 1501
BstPI	GGTNACC	2 cut(s)	527, 1565
BstSCI	CCNGG	3 cut(s)	92, 355, 481
BstSLI	GKGCMC	1 cut(s)	628
BstUI	CGCG	1 cut(s)	877
BstV1I	GCAGC	3 cut(s)	789, 985, 1012
BstX2I	RGATCY	1 cut(s)	1108
BstXI	CCANNNNNNTGG	3 cut(s)	878, 932, 1066
BstYI	RGATCY	1 cut(s)	1108
BsuRI	GGCC	6 cut(s)	5, 46, 98, 385, 811, 996
BtgI	CCRYGG	4 cut(s)	6, 523, 772, 1065
BtgZI	GCGATG	1 cut(s)	294
BtsIMutI	CAGTG	4 cut(s)	474, 655, 1234, 1533
BveI	ACCTGC	1 cut(s)	1553
CaiI	CAGNNNCTG	1 cut(s)	473
Cfr10I	RCCGGY	2 cut(s)	59, 1042
Cfr13I	GGNCC	7 cut(s)	96, 353, 359, 485, 809, 887, 994
CseI	GACGC	3 cut(s)	61, 65, 1527
Csp6I	GTAC	6 cut(s)	107, 188, 723, 1010, 1388, 1484
CviAII	CATG	9 cut(s)	524, 560, 629, 635, 739, 1066, 1136, 1270, 1498
CviQI	GTAC	6 cut(s)	107, 188, 723, 1010, 1388, 1484
DdeI	CTNAG	2 cut(s)	270, 1584
DpnI	GATC	5 cut(s)	747, 834, 921, 930, 1110
DpnII	GATC	5 cut(s)	745, 832, 919, 928, 1108
DraIII	CACNNNGTG	1 cut(s)	650
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	211, 442, 1194
EarI	CTCTTC	3 cut(s)	211, 442, 1194
EciI	GGCGGA	3 cut(s)	13, 144, 240
Eco130I	CCWWGG	4 cut(s)	99, 523, 989, 1065
Eco147I	AGGCCT	1 cut(s)	46
Eco31I	GGTCTC	2 cut(s)	753, 973
Eco32I	GATATC	2 cut(s)	135, 1434
Eco47I	GGWCC	4 cut(s)	353, 359, 485, 887
Eco57I	CTGAAG	1 cut(s)	1210
Eco88I	CYCGRG	1 cut(s)	1317
Eco91I	GGTNACC	2 cut(s)	527, 1565
EcoO109I	RGGNCCY	2 cut(s)	485, 994
EcoO65I	GGTNACC	2 cut(s)	527, 1565
EcoRI	GAATTC	1 cut(s)	841
EcoRII	CCWGG	2 cut(s)	92, 355
EcoRV	GATATC	2 cut(s)	135, 1434
EcoT14I	CCWWGG	4 cut(s)	99, 523, 989, 1065
EcoT22I	ATGCAT	1 cut(s)	969
ErhI	CCWWGG	4 cut(s)	99, 523, 989, 1065
FaeI	CATG	9 cut(s)	527, 563, 632, 638, 742, 1069, 1139, 1273, 1501
FaqI	GGGAC	3 cut(s)	145, 498, 1658
FatI	CATG	9 cut(s)	523, 559, 628, 634, 738, 1065, 1135, 1269, 1497
FauI	CCCGC	4 cut(s)	171, 593, 857, 882
FbaI	TGATCA	1 cut(s)	919
FblI	GTMKAC	1 cut(s)	1541
FspBI	CTAG	3 cut(s)	405, 792, 1545
GsaI	CCCAGC	2 cut(s)	551, 1042
GsuI	CTGGAG	1 cut(s)	1641
HaeIII	GGCC	6 cut(s)	5, 46, 98, 385, 811, 996
HapII	CCGG	5 cut(s)	60, 191, 482, 1043, 1076
HgaI	GACGC	3 cut(s)	61, 65, 1527
Hin1I	GRCGYC	2 cut(s)	57, 72
Hin1II	CATG	9 cut(s)	527, 563, 632, 638, 742, 1069, 1139, 1273, 1501
HincII	GTYRAC	1 cut(s)	1207
HindII	GTYRAC	1 cut(s)	1207
HpaII	CCGG	5 cut(s)	60, 191, 482, 1043, 1076
HphI	GGTGA	5 cut(s)	23, 129, 495, 914, 1414
Hpy166II	GTNNAC	5 cut(s)	626, 829, 1087, 1207, 1542
Hpy188I	TCNGA	7 cut(s)	42, 121, 306, 397, 1332, 1459, 1495
Hpy188III	TCNNGA	2 cut(s)	961, 1076
Hpy8I	GTNNAC	5 cut(s)	626, 829, 1087, 1207, 1542
Hpy99I	CGWCG	2 cut(s)	130, 133
HpyAV	CCTTC	7 cut(s)	186, 255, 510, 759, 1194, 1203, 1393
HpyCH4III	ACNGT	3 cut(s)	448, 650, 1528
HpyCH4IV	ACGT	1 cut(s)	592
HpyF3I	CTNAG	2 cut(s)	270, 1584
HpySE526I	ACGT	1 cut(s)	592
Hsp92I	GRCGYC	2 cut(s)	57, 72
Hsp92II	CATG	9 cut(s)	527, 563, 632, 638, 742, 1069, 1139, 1273, 1501
Kpn2I	TCCGGA	1 cut(s)	1075
KroI	GCCGGC	2 cut(s)	59, 1042
KroNI	GCCGGC	2 cut(s)	61, 1044
Ksp22I	TGATCA	1 cut(s)	919
Kzo9I	GATC	5 cut(s)	745, 832, 919, 928, 1108
LmnI	GCTCC	4 cut(s)	193, 221, 909, 1638
Lsp1109I	GCAGC	3 cut(s)	789, 985, 1012
LweI	GCATC	9 cut(s)	256, 560, 778, 954, 976, 1264, 1463, 1525, 1564
MaeI	CTAG	3 cut(s)	405, 792, 1545
MaeII	ACGT	1 cut(s)	592
MaeIII	GTNAC	4 cut(s)	448, 527, 616, 1565
MalI	GATC	5 cut(s)	747, 834, 921, 930, 1110
MbiI	CCGCTC	1 cut(s)	276
MboI	GATC	5 cut(s)	745, 832, 919, 928, 1108
MboII	GAAGA	5 cut(s)	198, 231, 429, 837, 1181
MfeI	CAATTG	1 cut(s)	781
MflI	RGATCY	1 cut(s)	1108
MhlI	GDGCHC	1 cut(s)	628
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	211, 419, 781, 841, 859, 901, 937
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	4 cut(s)	131, 407, 1336, 1622
MmeI	TCCRAC	1 cut(s)	324
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	969
MreI	CGCCGGCG	1 cut(s)	59
MroI	TCCGGA	1 cut(s)	1075
MroNI	GCCGGC	2 cut(s)	59, 1042
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	1199, 1301, 1323
MslI	CAYNNNNRTG	4 cut(s)	455, 633, 876, 1118
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	263, 1619
MspI	CCGG	5 cut(s)	60, 191, 482, 1043, 1076
MspR9I	CCNGG	3 cut(s)	94, 357, 483
MunI	CAATTG	1 cut(s)	781
Mva1269I	GAATGC	1 cut(s)	1125
MvaI	CCWGG	2 cut(s)	94, 357
MvnI	CGCG	1 cut(s)	877
NaeI	GCCGGC	2 cut(s)	61, 1044
NciI	CCSGG	1 cut(s)	483
NcoI	CCATGG	2 cut(s)	523, 1065
NdeII	GATC	5 cut(s)	745, 832, 919, 928, 1108
NgoMIV	GCCGGC	2 cut(s)	59, 1042
NlaIII	CATG	9 cut(s)	527, 563, 632, 638, 742, 1069, 1139, 1273, 1501
NlaIV	GGNNCC	6 cut(s)	486, 732, 868, 995, 1110, 1290
NmuCI	GTSAC	1 cut(s)	448
NsiI	ATGCAT	1 cut(s)	969
NspI	RCATGY	3 cut(s)	632, 638, 1501
OliI	CACNNNNGTG	2 cut(s)	455, 876
PaeR7I	CTCGAG	1 cut(s)	1317
PasI	CCCWGGG	1 cut(s)	93
PceI	AGGCCT	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PctI	GAATGC	1 cut(s)	1125
PdiI	GCCGGC	2 cut(s)	61, 1044
PfeI	GAWTC	6 cut(s)	17, 116, 431, 1172, 1358, 1460
PflMI	CCANNNNNTGG	1 cut(s)	93
PfoI	TCCNGGA	1 cut(s)	481
PleI	GAGTC	4 cut(s)	130, 406, 1335, 1621
PpsI	GAGTC	4 cut(s)	130, 406, 1335, 1621
PpuMI	RGGWCCY	1 cut(s)	485
PsiI	TTATAA	1 cut(s)	494
Psp5II	RGGWCCY	1 cut(s)	485
Psp6I	CCWGG	2 cut(s)	92, 355
PspEI	GGTNACC	2 cut(s)	527, 1565
PspFI	CCCAGC	2 cut(s)	547, 1038
PspGI	CCWGG	2 cut(s)	92, 355
PspN4I	GGNNCC	6 cut(s)	486, 732, 868, 995, 1110, 1290
PspPI	GGNCC	7 cut(s)	96, 353, 359, 485, 809, 887, 994
PspPPI	RGGWCCY	1 cut(s)	485
PspXI	VCTCGAGB	1 cut(s)	1317
PstNI	CAGNNNCTG	1 cut(s)	473
PsuI	RGATCY	1 cut(s)	1108
PvuII	CAGCTG	1 cut(s)	1619
RsaI	GTAC	6 cut(s)	108, 189, 724, 1011, 1389, 1485
RsaNI	GTAC	6 cut(s)	107, 188, 723, 1010, 1388, 1484
RseI	CAYNNNNRTG	4 cut(s)	455, 633, 876, 1118
SaqAI	TTAA	3 cut(s)	1199, 1301, 1323
Sau3AI	GATC	5 cut(s)	745, 832, 919, 928, 1108
Sau96I	GGNCC	7 cut(s)	96, 353, 359, 485, 809, 887, 994
SchI	GAGTC	4 cut(s)	131, 407, 1336, 1622
ScrFI	CCNGG	3 cut(s)	94, 357, 483
SduI	GDGCHC	1 cut(s)	628
SfaNI	GCATC	9 cut(s)	256, 560, 778, 954, 976, 1264, 1463, 1525, 1564
Sfr274I	CTCGAG	1 cut(s)	1317
SgrAI	CRCCGGYG	1 cut(s)	59
SinI	GGWCC	4 cut(s)	353, 359, 485, 887
SlaI	CTCGAG	1 cut(s)	1317
SmiMI	CAYNNNNRTG	4 cut(s)	455, 633, 876, 1118
SmlI	CTYRAG	3 cut(s)	1278, 1317, 1363
SmoI	CTYRAG	3 cut(s)	1278, 1317, 1363
Sse9I	AATT	7 cut(s)	211, 419, 781, 841, 859, 901, 937
SseBI	AGGCCT	1 cut(s)	46
SspI	AATATT	1 cut(s)	1256
SspMI	CTAG	3 cut(s)	405, 792, 1545
StuI	AGGCCT	1 cut(s)	46
StyD4I	CCNGG	3 cut(s)	92, 355, 481
StyI	CCWWGG	4 cut(s)	99, 523, 989, 1065
TaaI	ACNGT	3 cut(s)	448, 650, 1528
TaiI	ACGT	1 cut(s)	595
TaqI	TCGA	3 cut(s)	131, 574, 1318
TaqII	GACCGA	1 cut(s)	811
TasI	AATT	7 cut(s)	211, 419, 781, 841, 859, 901, 937
TatI	WGTACW	2 cut(s)	1387, 1483
TfiI	GAWTC	6 cut(s)	17, 116, 431, 1172, 1358, 1460
Tru1I	TTAA	3 cut(s)	1199, 1301, 1323
Tru9I	TTAA	3 cut(s)	1199, 1301, 1323
TscAI	CASTG	4 cut(s)	474, 655, 1234, 1533
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	4 cut(s)	11, 777, 973, 1025
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	3 cut(s)	959, 1117, 1266
TspGWI	ACGGA	1 cut(s)	761
TspRI	CASTG	4 cut(s)	474, 655, 1234, 1533
Van91I	CCANNNNNTGG	1 cut(s)	93
VneI	GTGCAC	1 cut(s)	624
VpaK11BI	GGWCC	4 cut(s)	353, 359, 485, 887
XapI	RAATTY	3 cut(s)	841, 859, 937
XceI	RCATGY	3 cut(s)	632, 638, 1501
XcmI	CCANNNNNNNNNTGG	1 cut(s)	902
XhoI	CTCGAG	1 cut(s)	1317
XmiI	GTMKAC	1 cut(s)	1541
XspI	CTAG	3 cut(s)	405, 792, 1545
Zsp2I	ATGCAT	1 cut(s)	969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.