Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001827

Physical Location & Seq

Genomic Coordinates Reverse (-)

27479026 .. 27481456

Gene Structure 2431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G267300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCGGGTGGGAAACTCTACAGTGCTTCAGACATGAATGTTATTTTCCAAAACGAAAAGCTCCCTTGCTCTTCTGACGTTCTTGAGTCAATTTGGGTTCCCACTTCTTCCTCCTCTTTTCATGGTTCAAATTCAATGGTTCATTTTGAAAGTGCAAGTGGAGAAGACTCCTTGGATAGGTCATTCTTCCGACCGATTGATAAAGAAAATGGGGATGACGATTATGATGCAAGCCTTAATCAACCAGGAAAGAAAAGGCGGCTTACGGTGGATCAAGTTCAGTTTCTGGAGAAGAACTTTGAGGTAGAAAACAAGCTTGAACCAGAGAGGAAGGCCCAACTTGCAAAAGAACTTGGCTTGCAGCCTCGCCAAGTTGCAATTTGGTTTCAAAACCGGCGGGCGAGGTTTAAGAACAAACAGCTGGAGAAGGAGTATGACTCATTGAAAGCTAGCTTTGACAAGCTCAAGGCTGATCATGACAATCTCCTCAAGGAGAACGGAAGTTTGAAGAATGAGATTGATTCCCTCAAGGACATGTTGATTTTGAAAGATAAAGGAAAGCCTGGAAAAAGAAATCTGGAGTTACATGATGCAAACAATATTATTTCATCCGATGTAAATCCCCAAAGTGCAACTCCAAATGCAGCAGCTTCTGATAATGTGCCAATGGTGGTATGCAAGCAAGAGGATGCAAGTTCTGCCAAAAGTGATGTTTTTGACTCAGATAGCCCACATTGCACTGAAAACCATTCTTCGTTGTTAGAGCCTGCTGATTCTTCTCATGTCTTTGAACCAGCTGAACAGTCGGATTTCTCACAAGATGAAGATGATGATCTCAGCAGGACCCTTTTGCCCCCACCCTACTTAAAACTTGAAGATAGCTGCTATGATGAGCCGCCCGCAAGTTCTAATAATTTTGTGTTCCCTATGGAAGATCAGCAGCCCTTTTGTTTCTGGCCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

322

Amino Acids

36.19

Weight (kDa)

4.69

Isoelectric Point (pI)

53.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27045 AT1G27045 AT1G27045 AT1G27045 AT1G27045
fragaria_vesca	FvH4_4g32060 FvH4_5g15520 FvH4_5g15520 FvH4_5g15520
malus_domestica	MD06G1032300.v1.1 MD06G1187600.v1.1 MD13G1030700.v1.1 MD13G1079500.v1.1 MD14G1194000.v1.1 MD16G1079400.v1.1
prunus_persica	Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.5G185900_v2.0.a1
pyrus_communis	pycom06g16680 pycom13g06920 pycom14g16140 pycom16g06860
rosa_chinensis	RchiOBHm_Chr4g0440751 RchiOBHm_Chr7g0180571
rosa_laevigata	RLG00000005254 RLG00000006157
rosa_multiflora	Rmu_sc0000424.1_g000003 Rmu_sc0005690.1_g000017 Rmu_sc0008018.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272780 Rroxscaffold_5G00381510
rosa_rugosa	Rorug04G0327600 Rorug06G0433800
rosa_samantha	Rh4AG379400 Rh4BG392200 Rh4BG392300 Rh4CG406900 Rh4CG407000 Rh4DG386100 Rh7AG035200 Rh7BG035100 Rh7CG036700 Rh7DG035400
rosa_wichuraiana	Rw4G032630 Rw4G032660 Rw7G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	5, 259, 397, 896, 900
AclWI	GGATC	1 cut(s)	279
AcsI	RAATTY	1 cut(s)	130
AcuI	CTGAAG	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	177
AflIII	ACRYGT	1 cut(s)	534
AjnI	CCWGG	2 cut(s)	244, 562
AluBI	AGCT	9 cut(s)	61, 316, 421, 449, 453, 463, 650, 797, 882
AluI	AGCT	9 cut(s)	61, 316, 421, 449, 453, 463, 650, 797, 882
AlwI	GGATC	1 cut(s)	279
AlwNI	CAGNNNCTG	2 cut(s)	286, 653
AoxI	GGCC	2 cut(s)	333, 956
ApeKI	GCWGC	5 cut(s)	361, 644, 647, 882, 940
ApoI	RAATTY	1 cut(s)	130
AspS9I	GGNCC	2 cut(s)	334, 843
AsuNHI	GCTAGC	1 cut(s)	449
AvaII	GGWCC	1 cut(s)	843
BbsI	GAAGAC	1 cut(s)	171
BbvI	GCAGC	5 cut(s)	373, 656, 659, 869, 952
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BciT130I	CCWGG	2 cut(s)	246, 564
BclI	TGATCA	1 cut(s)	472
BfaI	CTAG	1 cut(s)	450
BfmI	CTRYAG	1 cut(s)	19
BisI	GCNGC	7 cut(s)	260, 362, 645, 648, 883, 896, 941
BlsI	GCNGC	7 cut(s)	261, 363, 646, 649, 884, 897, 942
Bme1390I	CCNGG	2 cut(s)	246, 564
Bme18I	GGWCC	1 cut(s)	843
BmgT120I	GGNCC	2 cut(s)	334, 843
BmiI	GGNNCC	2 cut(s)	99, 845
BmrFI	CCNGG	2 cut(s)	246, 564
BmsI	GCATC	3 cut(s)	217, 580, 679
BmtI	GCTAGC	1 cut(s)	453
BpiI	GAAGAC	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	422, 454
BpmI	CTGGAG	3 cut(s)	308, 443, 599
BpuEI	CTTGAG	4 cut(s)	104, 449, 473, 512
BsaBI	GATNNNNATC	2 cut(s)	618, 831
BsaJI	CCNNGG	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	416, 446
Bsc4I	CCNNNNNNNGG	1 cut(s)	177
Bse118I	RCCGGY	1 cut(s)	393
Bse3DI	GCAATG	1 cut(s)	733
Bse8I	GATNNNNATC	2 cut(s)	618, 831
BseBI	CCWGG	2 cut(s)	246, 564
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	3 cut(s)	220, 608, 694
BseJI	GATNNNNATC	2 cut(s)	618, 831
BseLI	CCNNNNNNNGG	1 cut(s)	177
BseMI	GCAATG	1 cut(s)	733
BseMII	CTCAG	2 cut(s)	735, 850
BseRI	GAGGAG	2 cut(s)	103, 476
BseXI	GCAGC	5 cut(s)	373, 656, 659, 869, 952
Bsh1285I	CGRYCG	1 cut(s)	194
BshFI	GGCC	2 cut(s)	335, 958
BsiEI	CGRYCG	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	394
BslI	CCNNNNNNNGG	1 cut(s)	177
BsnI	GGCC	2 cut(s)	335, 958
Bsp143I	GATC	4 cut(s)	271, 472, 832, 934
BspACI	CCGC	5 cut(s)	5, 259, 397, 896, 900
BspANI	GGCC	2 cut(s)	335, 958
BspCNI	CTCAG	2 cut(s)	734, 849
BspHI	TCATGA	1 cut(s)	475
BspLI	GGNNCC	2 cut(s)	99, 845
BspOI	GCTAGC	1 cut(s)	453
BspPI	GGATC	1 cut(s)	279
BspQI	GCTCTTC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	733
BsrFI	RCCGGY	1 cut(s)	393
BssAI	RCCGGY	1 cut(s)	393
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	4 cut(s)	271, 472, 832, 934
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	2 cut(s)	246, 564
Bst4CI	ACNGT	3 cut(s)	23, 268, 804
Bst6I	CTCTTC	1 cut(s)	76
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstC8I	GCNNGC	7 cut(s)	232, 359, 399, 451, 680, 768, 900
BstDEI	CTNAG	2 cut(s)	721, 836
BstENI	CCTNNNNNAGG	1 cut(s)	175
BstF5I	GGATG	3 cut(s)	220, 608, 694
BstKTI	GATC	4 cut(s)	274, 475, 835, 937
BstMBI	GATC	4 cut(s)	271, 472, 832, 934
BstMCI	CGRYCG	1 cut(s)	194
BstMWI	GCNNNNNNNGC	3 cut(s)	341, 698, 735
BstNI	CCWGG	2 cut(s)	246, 564
BstNSI	RCATGY	1 cut(s)	538
BstSCI	CCNGG	2 cut(s)	244, 562
BstSFI	CTRYAG	1 cut(s)	19
BstV1I	GCAGC	5 cut(s)	373, 656, 659, 869, 952
BstV2I	GAAGAC	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	335, 958
BtsCI	GGATG	3 cut(s)	220, 608, 694
BtsIMutI	CAGTG	2 cut(s)	28, 738
Cac8I	GCNNGC	7 cut(s)	232, 359, 399, 451, 680, 768, 900
CaiI	CAGNNNCTG	2 cut(s)	286, 653
CciI	TCATGA	1 cut(s)	475
Cfr10I	RCCGGY	1 cut(s)	393
Cfr13I	GGNCC	2 cut(s)	334, 843
CviAII	CATG	6 cut(s)	34, 122, 476, 535, 587, 782
DdeI	CTNAG	2 cut(s)	721, 836
DpnI	GATC	4 cut(s)	273, 474, 834, 936
DpnII	GATC	4 cut(s)	271, 472, 832, 934
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	843
Eco57I	CTGAAG	1 cut(s)	12
EcoNI	CCTNNNNNAGG	1 cut(s)	175
EcoO109I	RGGNCCY	1 cut(s)	843
EcoRII	CCWGG	2 cut(s)	244, 562
EcoT14I	CCWWGG	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	6 cut(s)	37, 125, 479, 538, 590, 785
FatI	CATG	6 cut(s)	33, 121, 475, 534, 586, 781
FauI	CCCGC	2 cut(s)	390, 907
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	7 cut(s)	260, 362, 645, 648, 883, 896, 941
FokI	GGATG	3 cut(s)	227, 595, 701
Fsp4HI	GCNGC	7 cut(s)	260, 362, 645, 648, 883, 896, 941
FspBI	CTAG	1 cut(s)	450
GluI	GCNGC	7 cut(s)	260, 362, 645, 648, 883, 896, 941
GsuI	CTGGAG	3 cut(s)	308, 443, 599
HaeIII	GGCC	2 cut(s)	335, 958
HapII	CCGG	1 cut(s)	394
Hin1II	CATG	6 cut(s)	37, 125, 479, 538, 590, 785
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	6 cut(s)	86, 167, 437, 521, 719, 773
HpaII	CCGG	1 cut(s)	394
Hpy188I	TCNGA	7 cut(s)	31, 76, 191, 613, 655, 724, 808
Hpy188III	TCNNGA	4 cut(s)	83, 287, 476, 578
HpyAV	CCTTC	2 cut(s)	325, 421
HpyCH4III	ACNGT	3 cut(s)	23, 268, 804
HpyCH4IV	ACGT	1 cut(s)	78
HpyF10VI	GCNNNNNNNGC	3 cut(s)	341, 698, 735
HpyF3I	CTNAG	2 cut(s)	721, 836
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	6 cut(s)	37, 125, 479, 538, 590, 785
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	4 cut(s)	271, 472, 832, 934
LguI	GCTCTTC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	66
Lsp1109I	GCAGC	5 cut(s)	373, 656, 659, 869, 952
LweI	GCATC	3 cut(s)	217, 580, 679
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	582
MalI	GATC	4 cut(s)	273, 474, 834, 936
MboI	GATC	4 cut(s)	271, 472, 832, 934
MluCI	AATT	4 cut(s)	90, 130, 378, 913
MlyI	GAGTC	4 cut(s)	95, 161, 431, 713
MmeI	TCCRAC	2 cut(s)	214, 786
MnlI	CCTC	9 cut(s)	121, 124, 295, 321, 375, 396, 497, 536, 679
MseI	TTAA	3 cut(s)	237, 408, 866
MspA1I	CMGCKG	2 cut(s)	421, 797
MspI	CCGG	1 cut(s)	394
MspR9I	CCNGG	2 cut(s)	246, 564
MvaI	CCWGG	2 cut(s)	246, 564
MwoI	GCNNNNNNNGC	3 cut(s)	341, 698, 735
NdeII	GATC	4 cut(s)	271, 472, 832, 934
NheI	GCTAGC	1 cut(s)	449
NlaIII	CATG	6 cut(s)	37, 125, 479, 538, 590, 785
NlaIV	GGNNCC	2 cut(s)	99, 845
NspI	RCATGY	1 cut(s)	538
PagI	TCATGA	1 cut(s)	475
PciI	ACATGT	1 cut(s)	534
PciSI	GCTCTTC	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	521, 773
PkrI	GCNGC	7 cut(s)	261, 363, 646, 649, 884, 897, 942
PleI	GAGTC	4 cut(s)	94, 161, 431, 713
PpsI	GAGTC	4 cut(s)	94, 161, 431, 713
PpuMI	RGGWCCY	1 cut(s)	843
PscI	ACATGT	1 cut(s)	534
Psp5II	RGGWCCY	1 cut(s)	843
Psp6I	CCWGG	2 cut(s)	244, 562
PspGI	CCWGG	2 cut(s)	244, 562
PspN4I	GGNNCC	2 cut(s)	99, 845
PspPI	GGNCC	2 cut(s)	334, 843
PspPPI	RGGWCCY	1 cut(s)	843
PstNI	CAGNNNCTG	2 cut(s)	286, 653
PvuII	CAGCTG	2 cut(s)	421, 797
SapI	GCTCTTC	1 cut(s)	76
SaqAI	TTAA	3 cut(s)	237, 408, 866
SatI	GCNGC	7 cut(s)	260, 362, 645, 648, 883, 896, 941
Sau3AI	GATC	4 cut(s)	271, 472, 832, 934
Sau96I	GGNCC	2 cut(s)	334, 843
SchI	GAGTC	4 cut(s)	95, 161, 431, 713
ScrFI	CCNGG	2 cut(s)	246, 564
SfaNI	GCATC	3 cut(s)	217, 580, 679
SfcI	CTRYAG	1 cut(s)	19
SinI	GGWCC	1 cut(s)	843
SmlI	CTYRAG	4 cut(s)	83, 464, 488, 527
SmoI	CTYRAG	4 cut(s)	83, 464, 488, 527
Sse9I	AATT	4 cut(s)	90, 130, 378, 913
SsiI	CCGC	5 cut(s)	5, 259, 397, 896, 900
SspI	AATATT	1 cut(s)	601
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	2 cut(s)	244, 562
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	3 cut(s)	23, 268, 804
TaiI	ACGT	1 cut(s)	81
TaqII	GACCGA	1 cut(s)	208
TasI	AATT	4 cut(s)	90, 130, 378, 913
TauI	GCSGC	2 cut(s)	262, 898
TfiI	GAWTC	2 cut(s)	521, 773
Tru1I	TTAA	3 cut(s)	237, 408, 866
Tru9I	TTAA	3 cut(s)	237, 408, 866
TscAI	CASTG	2 cut(s)	28, 745
TseI	GCWGC	5 cut(s)	361, 644, 647, 882, 940
TspDTI	ATGAA	5 cut(s)	50, 110, 131, 597, 837
TspGWI	ACGGA	1 cut(s)	513
TspRI	CASTG	2 cut(s)	28, 745
VpaK11BI	GGWCC	1 cut(s)	843
XagI	CCTNNNNNAGG	1 cut(s)	175
XapI	RAATTY	1 cut(s)	130
XceI	RCATGY	1 cut(s)	538
XspI	CTAG	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.