Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001827

Physical Location & Seq

Genomic Coordinates Forward (+)

9391609 .. 9393188

Gene Structure 1580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G27045.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGAAAACTCAGACACTGATTCAGAAGTTTTCTTTTGGTTTCAGAACCAAAACCAAAACCATAGCCATAAGTTTCCTTCTTCTTGTTTTCCTCCGAGCTCTCACTCTGCTTTTTATGGATCTAGCTCAATGATCAACACAGAGACTGCAACTATGGACGAAGAAGACGTATGTGAGAGCTACATGATGCGTGAGATAACCAAGAAACGGAAGCTAACACCGATCCAATTGCGTTTACTAGAGGAGAGTTTCGAAGAAGAGAAAAGACTCGAACCAGACAGGAAACTCTGGCTAGCCGAGAAGCTAGGGCTGCAGCCAAGCCAAGTCGCTGTCTGGTTCCAAAACAGAAGAGCTAGATACAAGACCAAACAGCTCGAACACGACTGTGACTCTCTTAAAGCTAGCTATGCTAAGCTCAAGACTGACTGGGACATTCTCTTTGTACAAAACCAAACCCTCAAGAGCAAGGTCGATCTTCTCAAAGAGAAGCTGAAAATGCAAGAGAATCTTGAAACTCAGTCTATTGAGAGGAAAAGACTTGGGGAAGAAGGTAGTTCGGTGAAAAGCGATAACACGCAGTACAGTGAAGAAGAAGGTTTGGAGAATCAATACAGTTTCCCGGAGCTTGCAGTTCTCGGATTTTATTATGATCCAACCTTAACTGCTTCAAATCTAAGGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

227

Amino Acids

26.62

Weight (kDa)

5.21

Isoelectric Point (pI)

59.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	17 - 70	3.6e-15	Homeodomain
HALZ	PF02183	72 - 113	2.2e-15	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27045 AT1G27045 AT1G27045 AT1G27045 AT1G27045
fragaria_vesca	FvH4_4g32060 FvH4_5g15520 FvH4_5g15520 FvH4_5g15520
malus_domestica	MD06G1032300.v1.1 MD06G1187600.v1.1 MD13G1030700.v1.1 MD13G1079500.v1.1 MD14G1194000.v1.1 MD16G1079400.v1.1
prunus_persica	Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.5G185900_v2.0.a1
pyrus_communis	pycom06g16680 pycom13g06920 pycom14g16140 pycom16g06860
rosa_chinensis	RchiOBHm_Chr4g0440751 RchiOBHm_Chr7g0180571
rosa_laevigata	RLG00000005254 RLG00000006157
rosa_multiflora	Rmu_sc0000424.1_g000003 Rmu_sc0005690.1_g000017 Rmu_sc0008018.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272780 Rroxscaffold_5G00381510
rosa_rugosa	Rorug04G0327600 Rorug06G0433800
rosa_samantha	Rh4AG379400 Rh4BG392200 Rh4BG392300 Rh4CG406900 Rh4CG407000 Rh4DG386100 Rh7AG035200 Rh7BG035100 Rh7CG036700 Rh7DG035400
rosa_wichuraiana	Rw4G032630 Rw4G032660 Rw7G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	127, 217, 644
AfaI	GTAC	2 cut(s)	444, 581
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	2 cut(s)	512, 669
AleI	CACNNNNGTG	1 cut(s)	384
Alw21I	GWGCWC	1 cut(s)	101
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	3 cut(s)	127, 217, 644
AlwNI	CAGNNNCTG	2 cut(s)	17, 146
ApeKI	GCWGC	2 cut(s)	310, 313
ArsI	GACNNNNNNTTYG	2 cut(s)	422, 454
AsuC2I	CCSGG	1 cut(s)	620
AsuHPI	GGTGA	1 cut(s)	571
AsuII	TTCGAA	1 cut(s)	252
AsuNHI	GCTAGC	2 cut(s)	292, 401
BanII	GRGCYC	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	101
BbvI	GCAGC	2 cut(s)	297, 325
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BclI	TGATCA	1 cut(s)	132
BcnI	CCSGG	1 cut(s)	620
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	6 cut(s)	123, 239, 293, 305, 354, 402
BfmI	CTRYAG	1 cut(s)	311
BisI	GCNGC	2 cut(s)	311, 314
BlpI	GCTNAGC	1 cut(s)	411
BlsI	GCNGC	2 cut(s)	312, 315
Bme1390I	CCNGG	1 cut(s)	620
BmiI	GGNNCC	1 cut(s)	338
BmrFI	CCNGG	1 cut(s)	620
BmrI	ACTGGG	1 cut(s)	436
BmsI	GCATC	1 cut(s)	177
BmtI	GCTAGC	2 cut(s)	296, 405
BmuI	ACTGGG	1 cut(s)	436
BpiI	GAAGAC	1 cut(s)	171
Bpu1102I	GCTNAGC	1 cut(s)	411
Bpu14I	TTCGAA	1 cut(s)	252
BpuEI	CTTGAG	2 cut(s)	401, 443
BpuMI	CCSGG	1 cut(s)	620
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	431
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMII	CTCAG	2 cut(s)	24, 530
BseNI	ACTGG	1 cut(s)	431
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	2 cut(s)	297, 325
BsiHKAI	GWGCWC	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	620
BslFI	GGGAC	1 cut(s)	443
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	443
Bsp119I	TTCGAA	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp1407I	TGTACA	1 cut(s)	442
Bsp143I	GATC	5 cut(s)	119, 132, 222, 472, 649
Bsp1720I	GCTNAGC	1 cut(s)	411
BspCNI	CTCAG	2 cut(s)	23, 529
BspLI	GGNNCC	1 cut(s)	338
BspMAI	CTGCAG	1 cut(s)	315
BspOI	GCTAGC	2 cut(s)	296, 405
BspPI	GGATC	3 cut(s)	127, 217, 644
BspQI	GCTCTTC	1 cut(s)	343
BspT104I	TTCGAA	1 cut(s)	252
BsrGI	TGTACA	1 cut(s)	442
BsrI	ACTGG	1 cut(s)	431
BssMI	GATC	5 cut(s)	119, 132, 222, 472, 649
Bst4CI	ACNGT	3 cut(s)	386, 584, 614
Bst6I	CTCTTC	2 cut(s)	252, 343
BstAUI	TGTACA	1 cut(s)	442
BstBI	TTCGAA	1 cut(s)	252
BstC8I	GCNNGC	3 cut(s)	294, 403, 627
BstDEI	CTNAG	4 cut(s)	10, 411, 516, 674
BstKTI	GATC	5 cut(s)	122, 135, 225, 475, 652
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	5 cut(s)	119, 132, 222, 472, 649
BstMWI	GCNNNNNNNGC	3 cut(s)	310, 407, 496
BstSCI	CCNGG	1 cut(s)	618
BstSFI	CTRYAG	1 cut(s)	311
BstV1I	GCAGC	2 cut(s)	297, 325
BstV2I	GAAGAC	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	119
BtsIMutI	CAGTG	2 cut(s)	15, 589
Cac8I	GCNNGC	3 cut(s)	294, 403, 627
CaiI	CAGNNNCTG	2 cut(s)	17, 146
Csp6I	GTAC	2 cut(s)	443, 580
CviAII	CATG	1 cut(s)	184
CviQI	GTAC	2 cut(s)	443, 580
DdeI	CTNAG	4 cut(s)	10, 411, 516, 674
DpnI	GATC	5 cut(s)	121, 134, 224, 474, 651
DpnII	GATC	5 cut(s)	119, 132, 222, 472, 649
Eam1104I	CTCTTC	2 cut(s)	252, 343
EarI	CTCTTC	2 cut(s)	252, 343
Ecl136II	GAGCTC	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	101
Eco53kI	GAGCTC	1 cut(s)	99
EcoICRI	GAGCTC	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	101
FaeI	CATG	1 cut(s)	187
FaiI	YATR	8 cut(s)	63, 69, 117, 155, 172, 185, 408, 648
FalI	AAGNNNNNCTT	2 cut(s)	492, 524
FaqI	GGGAC	1 cut(s)	443
FatI	CATG	1 cut(s)	183
FbaI	TGATCA	1 cut(s)	132
Fnu4HI	GCNGC	2 cut(s)	311, 314
FriOI	GRGCYC	1 cut(s)	101
Fsp4HI	GCNGC	2 cut(s)	311, 314
FspBI	CTAG	6 cut(s)	123, 239, 293, 305, 354, 402
GluI	GCNGC	2 cut(s)	311, 314
HapII	CCGG	1 cut(s)	620
Hin1II	CATG	1 cut(s)	187
HinfI	GANTC	5 cut(s)	20, 267, 389, 505, 604
HpaII	CCGG	1 cut(s)	620
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	5 cut(s)	13, 25, 45, 96, 638
Hpy188III	TCNNGA	3 cut(s)	418, 460, 509
Hpy8I	GTNNAC	1 cut(s)	236
HpyAV	CCTTC	3 cut(s)	87, 542, 587
HpyCH4III	ACNGT	3 cut(s)	386, 584, 614
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	4 cut(s)	149, 313, 499, 629
HpyF10VI	GCNNNNNNNGC	3 cut(s)	310, 407, 496
HpyF3I	CTNAG	4 cut(s)	10, 411, 516, 674
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	132
Kzo9I	GATC	5 cut(s)	119, 132, 222, 472, 649
LguI	GCTCTTC	1 cut(s)	343
LmnI	GCTCC	1 cut(s)	622
LpnPI	CCDG	6 cut(s)	265, 274, 288, 319, 412, 633
Lsp1109I	GCAGC	2 cut(s)	297, 325
LweI	GCATC	1 cut(s)	177
MaeI	CTAG	6 cut(s)	123, 239, 293, 305, 354, 402
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	386
MalI	GATC	5 cut(s)	121, 134, 224, 474, 651
MboI	GATC	5 cut(s)	119, 132, 222, 472, 649
MfeI	CAATTG	1 cut(s)	227
MflI	RGATCY	1 cut(s)	119
MhlI	GDGCHC	1 cut(s)	101
MluCI	AATT	1 cut(s)	227
MlyI	GAGTC	2 cut(s)	261, 383
MmeI	TCCRAC	1 cut(s)	677
MnlI	CCTC	4 cut(s)	102, 235, 467, 522
MseI	TTAA	2 cut(s)	396, 659
MslI	CAYNNNNRTG	1 cut(s)	384
MspI	CCGG	1 cut(s)	620
MspR9I	CCNGG	1 cut(s)	620
MunI	CAATTG	1 cut(s)	227
MwoI	GCNNNNNNNGC	3 cut(s)	310, 407, 496
NciI	CCSGG	1 cut(s)	620
NdeII	GATC	5 cut(s)	119, 132, 222, 472, 649
NheI	GCTAGC	2 cut(s)	292, 401
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	1 cut(s)	338
NmeAIII	GCCGAG	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	386
NspV	TTCGAA	1 cut(s)	252
OliI	CACNNNNGTG	1 cut(s)	384
PciSI	GCTCTTC	1 cut(s)	343
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PfeI	GAWTC	3 cut(s)	20, 505, 604
PfoI	TCCNGGA	1 cut(s)	618
PkrI	GCNGC	2 cut(s)	312, 315
PleI	GAGTC	2 cut(s)	261, 383
PpsI	GAGTC	2 cut(s)	261, 383
Psp124BI	GAGCTC	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	338
PstI	CTGCAG	1 cut(s)	315
PstNI	CAGNNNCTG	2 cut(s)	17, 146
PsuI	RGATCY	1 cut(s)	119
RsaI	GTAC	2 cut(s)	444, 581
RsaNI	GTAC	2 cut(s)	443, 580
RseI	CAYNNNNRTG	1 cut(s)	384
SacI	GAGCTC	1 cut(s)	101
SapI	GCTCTTC	1 cut(s)	343
SaqAI	TTAA	2 cut(s)	396, 659
SatI	GCNGC	2 cut(s)	311, 314
Sau3AI	GATC	5 cut(s)	119, 132, 222, 472, 649
SchI	GAGTC	2 cut(s)	261, 383
ScrFI	CCNGG	1 cut(s)	620
SduI	GDGCHC	1 cut(s)	101
SfaNI	GCATC	1 cut(s)	177
SfcI	CTRYAG	1 cut(s)	311
SfuI	TTCGAA	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	384
SmlI	CTYRAG	2 cut(s)	416, 458
SmoI	CTYRAG	2 cut(s)	416, 458
Sse9I	AATT	1 cut(s)	227
SspMI	CTAG	6 cut(s)	123, 239, 293, 305, 354, 402
SstI	GAGCTC	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	618
TaaI	ACNGT	3 cut(s)	386, 584, 614
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	4 cut(s)	252, 270, 375, 471
TasI	AATT	1 cut(s)	227
TatI	WGTACW	2 cut(s)	442, 579
TfiI	GAWTC	3 cut(s)	20, 505, 604
Tru1I	TTAA	2 cut(s)	396, 659
Tru9I	TTAA	2 cut(s)	396, 659
TscAI	CASTG	2 cut(s)	22, 589
TseFI	GTSAC	1 cut(s)	386
TseI	GCWGC	2 cut(s)	310, 313
Tsp45I	GTSAC	1 cut(s)	386
TspGWI	ACGGA	1 cut(s)	223
TspRI	CASTG	2 cut(s)	22, 589
XspI	CTAG	6 cut(s)	123, 239, 293, 305, 354, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.