Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001827

Physical Location & Seq

Genomic Coordinates Forward (+)

5590784 .. 5593021

Gene Structure 2238 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1079500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCGAGTGGGAAACTCTACGGTTCTTCTTCTTCTTCTTCTGCGGACATGAAAGTAACTTTTCGAAACGAAAAGCGTCCTCGCTCTTCTGACGTTCTCGAGTCTCTCTGGATTCCCAATCCTTCCTCTTCTTTTCATGCCTCAAATTCAATGGTTAATTTTGGAAATGTAAGTGGAGGGGATTCATTGGATAGGCCATTCTTCCAACCTAAAGAAGAAAATGAGGATGAGGATTATGACGGTAGCTACCTTCATCAGCCCGGAAAGAAAAGGCGGCTCACGGCGAATCAAGTTCAGTTTCTGGAGAAGAATTTTGAGTCAGAAAACAAGCTTGAACCGGAGAGGAAGGTGCAACTTGCTAAAGAACTTGGCTTGCAGCCTCGCCAGGTAGCAATCTGGTTTCAAAACCGGCGGGCGCGGTATAAGAACAAGCAGTTGGAAAAGGACTATGATTCATTGAAAGCTAGCTATGGTAAGCTCAAGGTTGATGCTGATAATCTCCTCAAGGAGAATGGAAGTTTGAAGAATGAGATTGATTCCATCAAGGATATTTTGCTTTCGAGAGAGAAAGGAAAGCCAGGAAAGGGAAATTCGGATTCACAGGATGCGATCAATACATCGGATTTGGAGCCTCGGAATGCAATTCTGAATGCGGGTTCAGAAAATGTGACCAAAGTGGCAATGGTGGTGTGCAAGCAAGAGGATGCAAGTTCTGCAAAAAGCGATGTCTTTGACTCGGACAGCCCGCACTGCACTGAAAACCATTCATCATTGTTAGAGCCGGCGGATTCCTCCCATGTGTTTGAACCAGCTGATCAATCAGATTTCTCGCAGGATGAAGATGATGATCTGGGAAAGACCCTTCTGCCCCCACCACCACCAAACTTGTTAAAGCTTGAAGATTGCTGCTATGATGATTTACCCCCACCAAGCTCTAGTAATTTTGGGTACATCCCTTTGGACGATCAGGATCAGCAGCCCTTTTGTTTCTGGCCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

334

Amino Acids

37.3

Weight (kDa)

4.81

Isoelectric Point (pI)

55.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	89 - 143	5.9e-17	Homeodomain
HALZ	PF02183	144 - 184	4.1e-14	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27045 AT1G27045 AT1G27045 AT1G27045 AT1G27045
fragaria_vesca	FvH4_4g32060 FvH4_5g15520 FvH4_5g15520 FvH4_5g15520
malus_domestica	MD06G1032300.v1.1 MD06G1187600.v1.1 MD13G1030700.v1.1 MD13G1079500.v1.1 MD14G1194000.v1.1 MD16G1079400.v1.1
prunus_persica	Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.5G185900_v2.0.a1
pyrus_communis	pycom06g16680 pycom13g06920 pycom14g16140 pycom16g06860
rosa_chinensis	RchiOBHm_Chr4g0440751 RchiOBHm_Chr7g0180571
rosa_laevigata	RLG00000005254 RLG00000006157
rosa_multiflora	Rmu_sc0000424.1_g000003 Rmu_sc0005690.1_g000017 Rmu_sc0008018.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272780 Rroxscaffold_5G00381510
rosa_rugosa	Rorug04G0327600 Rorug06G0433800
rosa_samantha	Rh4AG379400 Rh4BG392200 Rh4BG392300 Rh4CG406900 Rh4CG407000 Rh4DG386100 Rh7AG035200 Rh7BG035100 Rh7CG036700 Rh7DG035400
rosa_wichuraiana	Rw4G032630 Rw4G032660 Rw7G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	418
AciI	CCGC	7 cut(s)	44, 274, 412, 418, 653, 746, 785
AclWI	GGATC	1 cut(s)	978
AcsI	RAATTY	3 cut(s)	145, 310, 589
AfaI	GTAC	1 cut(s)	950
AfiI	CCNNNNNNNGG	1 cut(s)	584
AgsI	TTSAA	7 cut(s)	150, 335, 404, 460, 523, 806, 899
AjnI	CCWGG	2 cut(s)	384, 577
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AluBI	AGCT	8 cut(s)	246, 331, 464, 468, 478, 812, 895, 933
AluI	AGCT	8 cut(s)	246, 331, 464, 468, 478, 812, 895, 933
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	978
AlwNI	CAGNNNCTG	1 cut(s)	301
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	2 cut(s)	194, 992
ApeKI	GCWGC	3 cut(s)	376, 906, 976
ApoI	RAATTY	3 cut(s)	145, 310, 589
AspLEI	GCGC	1 cut(s)	418
AsuC2I	CCSGG	1 cut(s)	261
AsuII	TTCGAA	1 cut(s)	64
AsuNHI	GCTAGC	1 cut(s)	464
AvaI	CYCGRG	1 cut(s)	98
BbvI	GCAGC	3 cut(s)	388, 893, 988
BccI	CCATC	1 cut(s)	548
BceAI	ACGGC	1 cut(s)	297
BciT130I	CCWGG	2 cut(s)	386, 579
BclI	TGATCA	1 cut(s)	814
BcnI	CCSGG	1 cut(s)	261
BcoDI	GTCTC	1 cut(s)	108
BfaI	CTAG	2 cut(s)	465, 936
BisI	GCNGC	4 cut(s)	275, 377, 907, 977
BlsI	GCNGC	4 cut(s)	276, 378, 908, 978
Bme1390I	CCNGG	3 cut(s)	261, 386, 579
BmeT110I	CYCGRG	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	630
BmrFI	CCNGG	3 cut(s)	261, 386, 579
BmsI	GCATC	3 cut(s)	478, 595, 694
BmtI	GCTAGC	1 cut(s)	468
BpmI	CTGGAG	1 cut(s)	323
Bpu14I	TTCGAA	1 cut(s)	64
BpuEI	CTTGAG	2 cut(s)	464, 488
BpuMI	CCSGG	1 cut(s)	261
BsaBI	GATNNNNATC	2 cut(s)	846, 969
BsaJI	CCNNGG	1 cut(s)	632
BsaWI	WCCGGW	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	1 cut(s)	584
Bse118I	RCCGGY	2 cut(s)	408, 781
Bse3DI	GCAATG	1 cut(s)	687
Bse8I	GATNNNNATC	2 cut(s)	846, 969
BseBI	CCWGG	2 cut(s)	386, 579
BseDI	CCNNGG	1 cut(s)	632
BseGI	GGATG	5 cut(s)	232, 610, 709, 841, 951
BseJI	GATNNNNATC	2 cut(s)	846, 969
BseLI	CCNNNNNNNGG	1 cut(s)	584
BseMI	GCAATG	1 cut(s)	687
BseRI	GAGGAG	1 cut(s)	491
BseXI	GCAGC	3 cut(s)	388, 893, 988
BsgI	GTGCAG	1 cut(s)	736
Bsh1236I	CGCG	1 cut(s)	418
BshFI	GGCC	2 cut(s)	196, 994
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	4 cut(s)	261, 338, 409, 782
BslI	CCNNNNNNNGG	1 cut(s)	584
BsmAI	GTCTC	1 cut(s)	108
BsmI	GAATGC	2 cut(s)	643, 655
BsnI	GGCC	2 cut(s)	196, 994
BsoBI	CYCGRG	1 cut(s)	98
Bsp119I	TTCGAA	1 cut(s)	64
Bsp143I	GATC	5 cut(s)	609, 814, 847, 964, 970
BspACI	CCGC	7 cut(s)	44, 274, 412, 418, 653, 746, 785
BspANI	GGCC	2 cut(s)	196, 994
BspFNI	CGCG	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	630
BspOI	GCTAGC	1 cut(s)	468
BspPI	GGATC	1 cut(s)	978
BspQI	GCTCTTC	1 cut(s)	91
BspT104I	TTCGAA	1 cut(s)	64
BsrDI	GCAATG	1 cut(s)	687
BsrFI	RCCGGY	2 cut(s)	408, 781
BssAI	RCCGGY	2 cut(s)	408, 781
BssECI	CCNNGG	1 cut(s)	632
BssMI	GATC	5 cut(s)	609, 814, 847, 964, 970
Bst2UI	CCWGG	2 cut(s)	386, 579
Bst4CI	ACNGT	2 cut(s)	23, 242
Bst6I	CTCTTC	2 cut(s)	91, 133
BstAPI	GCANNNNNTGC	1 cut(s)	713
BstBI	TTCGAA	1 cut(s)	64
BstC8I	GCNNGC	6 cut(s)	374, 414, 466, 695, 746, 783
BstF5I	GGATG	5 cut(s)	232, 610, 709, 841, 951
BstFNI	CGCG	1 cut(s)	418
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	5 cut(s)	612, 817, 850, 967, 973
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	5 cut(s)	609, 814, 847, 964, 970
BstMWI	GCNNNNNNNGC	2 cut(s)	713, 750
BstNI	CCWGG	2 cut(s)	386, 579
BstSCI	CCNGG	3 cut(s)	259, 384, 577
BstUI	CGCG	1 cut(s)	418
BstV1I	GCAGC	3 cut(s)	388, 893, 988
BsuRI	GGCC	2 cut(s)	196, 994
BtgZI	GCGATG	1 cut(s)	738
BtsCI	GGATG	5 cut(s)	232, 610, 709, 841, 951
BtsI	GCAGTG	1 cut(s)	748
BtsIMutI	CAGTG	2 cut(s)	748, 753
Cac8I	GCNNGC	6 cut(s)	374, 414, 466, 695, 746, 783
CaiI	CAGNNNCTG	1 cut(s)	301
CfoI	GCGC	1 cut(s)	418
Cfr10I	RCCGGY	2 cut(s)	408, 781
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	949
CspCI	CAANNNNNGTGG	2 cut(s)	867, 902
CviAII	CATG	3 cut(s)	49, 137, 797
CviQI	GTAC	1 cut(s)	949
DpnI	GATC	5 cut(s)	611, 816, 849, 966, 972
DpnII	GATC	5 cut(s)	609, 814, 847, 964, 970
Eam1104I	CTCTTC	2 cut(s)	91, 133
EarI	CTCTTC	2 cut(s)	91, 133
EciI	GGCGGA	1 cut(s)	800
Eco88I	CYCGRG	1 cut(s)	98
EcoRII	CCWGG	2 cut(s)	384, 577
FaeI	CATG	3 cut(s)	52, 140, 800
FaiI	YATR	8 cut(s)	50, 138, 237, 423, 450, 471, 798, 912
FatI	CATG	3 cut(s)	48, 136, 796
FauI	CCCGC	3 cut(s)	405, 646, 753
FbaI	TGATCA	1 cut(s)	814
Fnu4HI	GCNGC	4 cut(s)	275, 377, 907, 977
FokI	GGATG	5 cut(s)	239, 617, 716, 848, 938
Fsp4HI	GCNGC	4 cut(s)	275, 377, 907, 977
FspBI	CTAG	2 cut(s)	465, 936
GlaI	GCGC	1 cut(s)	417
GluI	GCNGC	4 cut(s)	275, 377, 907, 977
GsuI	CTGGAG	1 cut(s)	323
HaeIII	GGCC	2 cut(s)	196, 994
HapII	CCGG	4 cut(s)	261, 338, 409, 782
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	3 cut(s)	52, 140, 800
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HindIII	AAGCTT	2 cut(s)	329, 893
HpaII	CCGG	4 cut(s)	261, 338, 409, 782
Hpy188I	TCNGA	9 cut(s)	91, 322, 595, 622, 636, 648, 661, 739, 823
Hpy188III	TCNNGA	5 cut(s)	98, 109, 302, 561, 968
HpyAV	CCTTC	4 cut(s)	132, 260, 340, 872
HpyCH4III	ACNGT	2 cut(s)	23, 242
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	7 cut(s)	352, 376, 641, 693, 707, 716, 753
HpyF10VI	GCNNNNNNNGC	2 cut(s)	713, 750
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	52, 140, 800
HspAI	GCGC	1 cut(s)	416
KroI	GCCGGC	1 cut(s)	781
KroNI	GCCGGC	1 cut(s)	783
Ksp22I	TGATCA	1 cut(s)	814
Kzo9I	GATC	5 cut(s)	609, 814, 847, 964, 970
LguI	GCTCTTC	1 cut(s)	91
LmnI	GCTCC	1 cut(s)	628
Lsp1109I	GCAGC	3 cut(s)	388, 893, 988
LweI	GCATC	3 cut(s)	478, 595, 694
MaeI	CTAG	2 cut(s)	465, 936
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	2 cut(s)	55, 667
MalI	GATC	5 cut(s)	611, 816, 849, 966, 972
MboI	GATC	5 cut(s)	609, 814, 847, 964, 970
MluCI	AATT	6 cut(s)	145, 157, 310, 589, 642, 940
MlyI	GAGTC	3 cut(s)	110, 326, 728
MmeI	TCCRAC	2 cut(s)	229, 417
MroNI	GCCGGC	1 cut(s)	781
MseI	TTAA	2 cut(s)	156, 890
MspA1I	CMGCKG	1 cut(s)	812
MspI	CCGG	4 cut(s)	261, 338, 409, 782
MspR9I	CCNGG	3 cut(s)	261, 386, 579
Mva1269I	GAATGC	2 cut(s)	643, 655
MvaI	CCWGG	2 cut(s)	386, 579
MvnI	CGCG	1 cut(s)	418
MwoI	GCNNNNNNNGC	2 cut(s)	713, 750
NaeI	GCCGGC	1 cut(s)	783
NciI	CCSGG	1 cut(s)	261
NdeII	GATC	5 cut(s)	609, 814, 847, 964, 970
NgoMIV	GCCGGC	1 cut(s)	781
NheI	GCTAGC	1 cut(s)	464
NlaIII	CATG	3 cut(s)	52, 140, 800
NlaIV	GGNNCC	1 cut(s)	630
NmuCI	GTSAC	1 cut(s)	667
NspV	TTCGAA	1 cut(s)	64
PaeR7I	CTCGAG	1 cut(s)	98
PciSI	GCTCTTC	1 cut(s)	91
PctI	GAATGC	2 cut(s)	643, 655
PdiI	GCCGGC	1 cut(s)	783
PfeI	GAWTC	7 cut(s)	112, 182, 286, 452, 536, 596, 788
PkrI	GCNGC	4 cut(s)	276, 378, 908, 978
PleI	GAGTC	3 cut(s)	109, 325, 728
PpsI	GAGTC	3 cut(s)	109, 325, 728
Psp6I	CCWGG	2 cut(s)	384, 577
PspGI	CCWGG	2 cut(s)	384, 577
PspN4I	GGNNCC	1 cut(s)	630
PstNI	CAGNNNCTG	1 cut(s)	301
PvuII	CAGCTG	1 cut(s)	812
RsaI	GTAC	1 cut(s)	950
RsaNI	GTAC	1 cut(s)	949
SapI	GCTCTTC	1 cut(s)	91
SaqAI	TTAA	2 cut(s)	156, 890
SatI	GCNGC	4 cut(s)	275, 377, 907, 977
Sau3AI	GATC	5 cut(s)	609, 814, 847, 964, 970
SchI	GAGTC	3 cut(s)	110, 326, 728
ScrFI	CCNGG	3 cut(s)	261, 386, 579
SfaNI	GCATC	3 cut(s)	478, 595, 694
Sfr274I	CTCGAG	1 cut(s)	98
SfuI	TTCGAA	1 cut(s)	64
SlaI	CTCGAG	1 cut(s)	98
SmlI	CTYRAG	3 cut(s)	98, 479, 503
SmoI	CTYRAG	3 cut(s)	98, 479, 503
Sse9I	AATT	6 cut(s)	145, 157, 310, 589, 642, 940
SsiI	CCGC	7 cut(s)	44, 274, 412, 418, 653, 746, 785
SspMI	CTAG	2 cut(s)	465, 936
StyD4I	CCNGG	3 cut(s)	259, 384, 577
TaaI	ACNGT	2 cut(s)	23, 242
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	3 cut(s)	64, 99, 560
TasI	AATT	6 cut(s)	145, 157, 310, 589, 642, 940
TauI	GCSGC	1 cut(s)	277
TfiI	GAWTC	7 cut(s)	112, 182, 286, 452, 536, 596, 788
Tru1I	TTAA	2 cut(s)	156, 890
Tru9I	TTAA	2 cut(s)	156, 890
TscAI	CASTG	2 cut(s)	755, 760
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	3 cut(s)	376, 906, 976
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	7 cut(s)	65, 125, 174, 242, 444, 756, 852
TspRI	CASTG	2 cut(s)	755, 760
XapI	RAATTY	3 cut(s)	145, 310, 589
XcmI	CCANNNNNNNNNTGG	1 cut(s)	679
XhoI	CTCGAG	1 cut(s)	98
XspI	CTAG	2 cut(s)	465, 936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.