Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001827

Physical Location & Seq

Genomic Coordinates Reverse (-)

28517108 .. 28519053

Gene Structure 1946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1194000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGCCGGCGGGAGGGTCAACGGCGGCCGAAATTCGTCCGTCCTCAGTGCTTTGCTTCAGAACCAGAGGAGTTCTGAGCCTCTTGATTCTCTGTTCCTTTCTGGGTCATCAAATTCTTCCTCTGCTTCTTTTCTGGGTTCAAGATCGATGGTGAGTTTCGAAGATGTACGCGGAGGAAGTGGATTGAATAGGTCATTGTTCCACCAGTATGAGCACGAAGATAACGGGGAAGATGACTTGGGTGAGTATCTCCATCAACCTGGGAAGAAGAGGCGGCTAACCGCTGATCAAGTCCAGTTTCTCGAAAAAAAAGCTTTGATGTGGAAAACAAGCTGGAACCAGAGAGGAAAGTCCTGCTTGCAAAGGACCTTGGCTTGCAGCCTCGGCAGGTTGCGATATGGTTCCAGAACCGCCGGGCGAGGTGGAAGACAAAACACCTTGAGAAGGATTATGAGGTGCTGCAAGCCAACTACAATAATCTCAAGGCTAACTGTTCTTATCCTCTCAGACAAGCTGCAACTCAAAGAGAAGGAGAGGGAAAATTCAGAACTATCTGATACCAACAAATTATCTCAAGAACTGCCGCAGAAGCCAATTGCTGACTCGGCCTCCGAAGGCGAAGTATCAAAAGTCTCAGCTGTGGCCTCTAAGCAGGAAGATCATAGTTCAGGCAGGAGTGACATATTTGATTCAGACAGCCCACATTACCCGGATGGAGTTCACTCTTCACTCTTAGAGCCTGGTGATTCTTCATATGTTTTCGAACCTGAGCAGTCTGACCTTTCCCAAGATGAAGAAGATAACTTCAGCAAAAGCCTGCTGCCTCCATACATCTTCCCAAAGCTTGAAGATGTTGATTACTCCGATACGCCTGCAAATTCCTGTAATTTCGGATTCCCGATGGAAGATCATGCCTTTTGGTCCTGGTCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

312

Amino Acids

34.66

Weight (kDa)

5.6

Isoelectric Point (pI)

55.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27045 AT1G27045 AT1G27045 AT1G27045 AT1G27045
fragaria_vesca	FvH4_4g32060 FvH4_5g15520 FvH4_5g15520 FvH4_5g15520
malus_domestica	MD06G1032300.v1.1 MD06G1187600.v1.1 MD13G1030700.v1.1 MD13G1079500.v1.1 MD14G1194000.v1.1 MD16G1079400.v1.1
prunus_persica	Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.5G185900_v2.0.a1
pyrus_communis	pycom06g16680 pycom13g06920 pycom14g16140 pycom16g06860
rosa_chinensis	RchiOBHm_Chr4g0440751 RchiOBHm_Chr7g0180571
rosa_laevigata	RLG00000005254 RLG00000006157
rosa_multiflora	Rmu_sc0000424.1_g000003 Rmu_sc0005690.1_g000017 Rmu_sc0008018.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272780 Rroxscaffold_5G00381510
rosa_rugosa	Rorug04G0327600 Rorug06G0433800
rosa_samantha	Rh4AG379400 Rh4BG392200 Rh4BG392300 Rh4CG406900 Rh4CG407000 Rh4DG386100 Rh7AG035200 Rh7BG035100 Rh7CG036700 Rh7DG035400
rosa_wichuraiana	Rw4G032630 Rw4G032660 Rw7G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	378
AccII	CGCG	1 cut(s)	171
AciI	CCGC	7 cut(s)	9, 24, 171, 274, 282, 411, 584
AcoI	YGGCCR	2 cut(s)	3, 25
AcsI	RAATTY	4 cut(s)	31, 112, 541, 877
AcuI	CTGAAG	2 cut(s)	41, 790
AfaI	GTAC	1 cut(s)	168
AfiI	CCNNNNNNNGG	2 cut(s)	12, 444
AgsI	TTSAA	3 cut(s)	141, 187, 848
AjnI	CCWGG	3 cut(s)	259, 739, 923
AluBI	AGCT	5 cut(s)	314, 333, 514, 638, 844
AluI	AGCT	5 cut(s)	314, 333, 514, 638, 844
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	637
AoxI	GGCC	4 cut(s)	3, 25, 606, 642
ApeKI	GCWGC	4 cut(s)	378, 459, 514, 820
ApoI	RAATTY	4 cut(s)	31, 112, 541, 877
AspS9I	GGNCC	2 cut(s)	366, 921
AsuC2I	CCSGG	2 cut(s)	415, 710
AsuHPI	GGTGA	3 cut(s)	163, 254, 755
AsuII	TTCGAA	2 cut(s)	159, 762
AvaII	GGWCC	2 cut(s)	366, 921
BbsI	GAAGAC	1 cut(s)	433
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	4 cut(s)	390, 446, 501, 807
BccI	CCATC	4 cut(s)	142, 261, 707, 895
BceAI	ACGGC	1 cut(s)	37
BcgI	CGANNNNNNTGC	2 cut(s)	854, 888
BciT130I	CCWGG	3 cut(s)	261, 741, 925
BclI	TGATCA	1 cut(s)	286
BcnI	CCSGG	2 cut(s)	415, 710
BcoDI	GTCTC	1 cut(s)	637
BfuAI	ACCTGC	1 cut(s)	378
BisI	GCNGC	7 cut(s)	25, 275, 379, 460, 515, 584, 821
BlsI	GCNGC	7 cut(s)	26, 276, 380, 461, 516, 585, 822
Bme1390I	CCNGG	5 cut(s)	261, 415, 710, 741, 925
Bme18I	GGWCC	2 cut(s)	366, 921
BmgT120I	GGNCC	2 cut(s)	366, 921
BmiI	GGNNCC	2 cut(s)	338, 403
BmrFI	CCNGG	5 cut(s)	261, 415, 710, 741, 925
BpiI	GAAGAC	1 cut(s)	433
Bpu10I	CCTNAGC	1 cut(s)	768
Bpu14I	TTCGAA	2 cut(s)	159, 762
BpuEI	CTTGAG	3 cut(s)	460, 466, 558
BpuMI	CCSGG	2 cut(s)	415, 710
Bsa29I	ATCGAT	1 cut(s)	146
BsaJI	CCNNGG	3 cut(s)	260, 369, 382
BsaXI	ACNNNNNCTCC	2 cut(s)	593, 623
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 444
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	2 cut(s)	205, 295
BseBI	CCWGG	3 cut(s)	261, 741, 925
BseCI	ATCGAT	1 cut(s)	146
BseDI	CCNNGG	3 cut(s)	260, 369, 382
BseGI	GGATG	1 cut(s)	718
BseLI	CCNNNNNNNGG	2 cut(s)	12, 444
BseMII	CTCAG	5 cut(s)	58, 66, 519, 648, 759
BseNI	ACTGG	2 cut(s)	205, 295
BseRI	GAGGAG	1 cut(s)	82
BseX3I	CGGCCG	1 cut(s)	25
BseXI	GCAGC	4 cut(s)	390, 446, 501, 807
Bsh1236I	CGCG	1 cut(s)	171
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	4 cut(s)	5, 27, 608, 644
BshVI	ATCGAT	1 cut(s)	146
BsiEI	CGRYCG	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	3 cut(s)	6, 414, 710
BslI	CCNNNNNNNGG	2 cut(s)	12, 444
BsmAI	GTCTC	1 cut(s)	637
BsnI	GGCC	4 cut(s)	5, 27, 608, 644
Bsp119I	TTCGAA	2 cut(s)	159, 762
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	4 cut(s)	143, 286, 658, 907
BspACI	CCGC	7 cut(s)	9, 24, 171, 274, 282, 411, 584
BspANI	GGCC	4 cut(s)	5, 27, 608, 644
BspCNI	CTCAG	5 cut(s)	57, 67, 518, 647, 760
BspDI	ATCGAT	1 cut(s)	146
BspFNI	CGCG	1 cut(s)	171
BspLI	GGNNCC	2 cut(s)	338, 403
BspMI	ACCTGC	1 cut(s)	378
BspT104I	TTCGAA	2 cut(s)	159, 762
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	2 cut(s)	205, 295
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	3 cut(s)	260, 369, 382
BssMI	GATC	4 cut(s)	143, 286, 658, 907
BssT1I	CCWWGG	1 cut(s)	369
Bst2UI	CCWGG	3 cut(s)	261, 741, 925
Bst4CI	ACNGT	1 cut(s)	493
Bst6I	CTCTTC	2 cut(s)	263, 730
BstBI	TTCGAA	2 cut(s)	159, 762
BstC8I	GCNNGC	6 cut(s)	7, 359, 376, 464, 818, 873
BstDEI	CTNAG	7 cut(s)	44, 75, 505, 634, 648, 733, 768
BstENI	CCTNNNNNAGG	1 cut(s)	442
BstF5I	GGATG	1 cut(s)	718
BstFNI	CGCG	1 cut(s)	171
BstKTI	GATC	4 cut(s)	146, 289, 661, 910
BstMAI	GTCTC	1 cut(s)	637
BstMBI	GATC	4 cut(s)	143, 286, 658, 907
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	3 cut(s)	384, 589, 605
BstNI	CCWGG	3 cut(s)	261, 741, 925
BstSCI	CCNGG	5 cut(s)	259, 413, 708, 739, 923
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	4 cut(s)	390, 446, 501, 807
BstV2I	GAAGAC	1 cut(s)	433
BstXI	CCANNNNNNTGG	1 cut(s)	260
BstZI	CGGCCG	1 cut(s)	25
Bsu15I	ATCGAT	1 cut(s)	146
BsuRI	GGCC	4 cut(s)	5, 27, 608, 644
BsuTUI	ATCGAT	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	718
BtsIMutI	CAGTG	1 cut(s)	52
BveI	ACCTGC	1 cut(s)	378
Cac8I	GCNNGC	6 cut(s)	7, 359, 376, 464, 818, 873
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	2 cut(s)	366, 921
ClaI	ATCGAT	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	167
CviAII	CATG	1 cut(s)	911
CviQI	GTAC	1 cut(s)	167
DdeI	CTNAG	7 cut(s)	44, 75, 505, 634, 648, 733, 768
DpnI	GATC	4 cut(s)	145, 288, 660, 909
DpnII	GATC	4 cut(s)	143, 286, 658, 907
EaeI	YGGCCR	2 cut(s)	3, 25
EagI	CGGCCG	1 cut(s)	25
Eam1104I	CTCTTC	2 cut(s)	263, 730
EarI	CTCTTC	2 cut(s)	263, 730
EclXI	CGGCCG	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	369
Eco47I	GGWCC	2 cut(s)	366, 921
Eco52I	CGGCCG	1 cut(s)	25
Eco57I	CTGAAG	2 cut(s)	41, 790
EcoNI	CCTNNNNNAGG	1 cut(s)	442
EcoO109I	RGGNCCY	1 cut(s)	366
EcoRII	CCWGG	3 cut(s)	259, 739, 923
EcoT14I	CCWWGG	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	1 cut(s)	914
FaiI	YATR	9 cut(s)	210, 399, 452, 663, 683, 754, 756, 829, 912
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FatI	CATG	1 cut(s)	910
FauI	CCCGC	1 cut(s)	2
FauNDI	CATATG	1 cut(s)	754
FbaI	TGATCA	1 cut(s)	286
Fnu4HI	GCNGC	7 cut(s)	25, 275, 379, 460, 515, 584, 821
FokI	GGATG	1 cut(s)	725
Fsp4HI	GCNGC	7 cut(s)	25, 275, 379, 460, 515, 584, 821
GluI	GCNGC	7 cut(s)	25, 275, 379, 460, 515, 584, 821
HaeIII	GGCC	4 cut(s)	5, 27, 608, 644
HapII	CCGG	3 cut(s)	6, 414, 710
Hin1II	CATG	1 cut(s)	914
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HindIII	AAGCTT	2 cut(s)	312, 842
HinfI	GANTC	5 cut(s)	86, 602, 689, 746, 894
HpaII	CCGG	3 cut(s)	6, 414, 710
HphI	GGTGA	3 cut(s)	163, 254, 755
Hpy166II	GTNNAC	2 cut(s)	19, 721
Hpy188III	TCNNGA	6 cut(s)	83, 141, 302, 405, 575, 898
Hpy8I	GTNNAC	2 cut(s)	19, 721
HpyAV	CCTTC	3 cut(s)	438, 523, 608
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4V	TGCA	5 cut(s)	361, 378, 462, 517, 875
HpyF10VI	GCNNNNNNNGC	3 cut(s)	384, 589, 605
HpyF3I	CTNAG	7 cut(s)	44, 75, 505, 634, 648, 733, 768
Hsp92II	CATG	1 cut(s)	914
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	4 cut(s)	143, 286, 658, 907
Lsp1109I	GCAGC	4 cut(s)	390, 446, 501, 807
MaeIII	GTNAC	1 cut(s)	677
MalI	GATC	4 cut(s)	145, 288, 660, 909
MboI	GATC	4 cut(s)	143, 286, 658, 907
MfeI	CAATTG	1 cut(s)	594
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	7 cut(s)	31, 112, 541, 566, 594, 877, 886
MlyI	GAGTC	1 cut(s)	596
MroNI	GCCGGC	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	207
MspA1I	CMGCKG	2 cut(s)	284, 638
MspI	CCGG	3 cut(s)	6, 414, 710
MspR9I	CCNGG	5 cut(s)	261, 415, 710, 741, 925
MunI	CAATTG	1 cut(s)	594
MvaI	CCWGG	3 cut(s)	261, 741, 925
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	3 cut(s)	384, 589, 605
NaeI	GCCGGC	1 cut(s)	7
NciI	CCSGG	2 cut(s)	415, 710
NdeI	CATATG	1 cut(s)	754
NdeII	GATC	4 cut(s)	143, 286, 658, 907
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	1 cut(s)	914
NlaIV	GGNNCC	2 cut(s)	338, 403
NmeAIII	GCCGAG	2 cut(s)	363, 584
NmuCI	GTSAC	1 cut(s)	677
NspV	TTCGAA	2 cut(s)	159, 762
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	4 cut(s)	86, 689, 746, 894
PkrI	GCNGC	7 cut(s)	26, 276, 380, 461, 516, 585, 822
PleI	GAGTC	1 cut(s)	596
PpsI	GAGTC	1 cut(s)	596
PpuMI	RGGWCCY	1 cut(s)	366
Psp5II	RGGWCCY	1 cut(s)	366
Psp6I	CCWGG	3 cut(s)	259, 739, 923
PspGI	CCWGG	3 cut(s)	259, 739, 923
PspN4I	GGNNCC	2 cut(s)	338, 403
PspPI	GGNCC	2 cut(s)	366, 921
PspPPI	RGGWCCY	1 cut(s)	366
PvuII	CAGCTG	1 cut(s)	638
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
RseI	CAYNNNNRTG	1 cut(s)	207
SatI	GCNGC	7 cut(s)	25, 275, 379, 460, 515, 584, 821
Sau3AI	GATC	4 cut(s)	143, 286, 658, 907
Sau96I	GGNCC	2 cut(s)	366, 921
SchI	GAGTC	1 cut(s)	596
ScrFI	CCNGG	5 cut(s)	261, 415, 710, 741, 925
SduI	GDGCHC	1 cut(s)	216
SfuI	TTCGAA	2 cut(s)	159, 762
SinI	GGWCC	2 cut(s)	366, 921
SmiMI	CAYNNNNRTG	1 cut(s)	207
SmlI	CTYRAG	3 cut(s)	439, 481, 573
SmoI	CTYRAG	3 cut(s)	439, 481, 573
Sse9I	AATT	7 cut(s)	31, 112, 541, 566, 594, 877, 886
SsiI	CCGC	7 cut(s)	9, 24, 171, 274, 282, 411, 584
StyD4I	CCNGG	5 cut(s)	259, 413, 708, 739, 923
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	1 cut(s)	493
TaqI	TCGA	4 cut(s)	146, 159, 303, 762
TasI	AATT	7 cut(s)	31, 112, 541, 566, 594, 877, 886
TauI	GCSGC	3 cut(s)	27, 277, 586
TfiI	GAWTC	4 cut(s)	86, 689, 746, 894
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	1 cut(s)	677
TseI	GCWGC	4 cut(s)	378, 459, 514, 820
Tsp45I	GTSAC	1 cut(s)	677
TspDTI	ATGAA	2 cut(s)	741, 807
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	1 cut(s)	52
VpaK11BI	GGWCC	2 cut(s)	366, 921
XagI	CCTNNNNNAGG	1 cut(s)	442
XapI	RAATTY	4 cut(s)	31, 112, 541, 877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.