Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001827

Physical Location & Seq

Genomic Coordinates Reverse (-)

15407919 .. 15410237

Gene Structure 2319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G185900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCCGGTGGTAGGGTATATAGCGGTGGTGCTTCTTCGTCCAGCTTAAGTGTTTTGCTTCAGAATCAGAGGGGCCCTTGTGCTTCTGAGCCTCTTGATTCTCTGTTCCTTTCTGGGTCTTCTAATTCTTCCTCTGCTTCTCCTTTTCTGGGTTCAAGATCTATGGTGAGTTTCGAAGATGTTCGTGGAGGAAATGGATCGAATAGGTCATTGTTCCACCAGTATGAGCACGAAGACAATGGGGACGACGACTTGGATGAGTATTTCCATCAACCTGGAAAGAAGAGGCGGCTGACTGTTGACCAAGTCCAGTTTCTAGAGAAAAGCTTTGACATGGAGAATAAGCTTGAACCGGAAAGGAAAATCCTTCTCGCAAAGGACCTAGGCTTGCAGCCTAGGCAAGTTGCAATATGGTTCCAGAACCGCCGGGCAAGGTGGAAAAATAAACAGCTGGAGAAGGATTACGAGGTTTTGCAAGCCAACTACAATAGTCTCAAAGCTGATTGTGAGAGCCTTGCTAAAGAAAATGAAAAACTAAAGTCTGAGGTTCTTGTTCTCTCGGAAAAGCTGCCCCACAAAGAGAAAGAGAGTGGAACCTCAGAACTCTCTGATACCAACAAAGTGTCTCAAGAGCCGACGCAGAATCCAACAGCCGATTCGCTTTCAGAGTGTGAAGTATCCAAAGTCTCAGCTGTGGCCTCTAAGCAGGAAGATCTTAGTTCAGGCAAGAGTGATATATTTGATTCAGATAGCCCACATTACACTGATGGGGTTCATTCTTCAATATTGGAGCCTGGTGATTCTTCATATGTTTTTGAACCTGATCAGTCTGACCTTTCCCAAGATGAAGAAGATAACTTGAGCAAAAGCCTGTTGCCTCCATACATCTTCCCAAAGCTCGAAGATGTTGATTACTCCGACACGCCTGTAAATTCATGTAATTTCGGATTCCCAGTGGAAGATCATGCCTTTTGGTCCTGGTCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

330

Amino Acids

36.76

Weight (kDa)

4.67

Isoelectric Point (pI)

55.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27045 AT1G27045 AT1G27045 AT1G27045 AT1G27045
fragaria_vesca	FvH4_4g32060 FvH4_5g15520 FvH4_5g15520 FvH4_5g15520
malus_domestica	MD06G1032300.v1.1 MD06G1187600.v1.1 MD13G1030700.v1.1 MD13G1079500.v1.1 MD14G1194000.v1.1 MD16G1079400.v1.1
prunus_persica	Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.5G185900_v2.0.a1
pyrus_communis	pycom06g16680 pycom13g06920 pycom14g16140 pycom16g06860
rosa_chinensis	RchiOBHm_Chr4g0440751 RchiOBHm_Chr7g0180571
rosa_laevigata	RLG00000005254 RLG00000006157
rosa_multiflora	Rmu_sc0000424.1_g000003 Rmu_sc0005690.1_g000017 Rmu_sc0008018.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272780 Rroxscaffold_5G00381510
rosa_rugosa	Rorug04G0327600 Rorug06G0433800
rosa_samantha	Rh4AG379400 Rh4BG392200 Rh4BG392300 Rh4CG406900 Rh4CG407000 Rh4DG386100 Rh7AG035200 Rh7BG035100 Rh7CG036700 Rh7DG035400
rosa_wichuraiana	Rw4G032630 Rw4G032660 Rw7G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	24, 289, 424
AclWI	GGATC	1 cut(s)	205
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	931
AcuI	CTGAAG	1 cut(s)	44
AfiI	CCNNNNNNNGG	2 cut(s)	12, 149
AflII	CTTAAG	1 cut(s)	46
AgsI	TTSAA	4 cut(s)	156, 350, 783, 818
AjnI	CCWGG	3 cut(s)	274, 793, 977
AjuI	GAANNNNNNNTTGG	4 cut(s)	297, 329, 640, 672
AluBI	AGCT	8 cut(s)	45, 327, 346, 451, 500, 568, 692, 898
AluI	AGCT	8 cut(s)	45, 327, 346, 451, 500, 568, 692, 898
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	3 cut(s)	497, 630, 691
AlwI	GGATC	1 cut(s)	205
AoxI	GGCC	3 cut(s)	3, 73, 696
ApaI	GGGCCC	1 cut(s)	77
ApeKI	GCWGC	2 cut(s)	391, 568
ApoI	RAATTY	1 cut(s)	931
Asp700I	GAANNNNTTC	1 cut(s)	180
AspA2I	CCTAGG	2 cut(s)	382, 395
AspS9I	GGNCC	4 cut(s)	73, 74, 379, 975
AsuC2I	CCSGG	1 cut(s)	428
AsuHPI	GGTGA	2 cut(s)	178, 809
AsuII	TTCGAA	1 cut(s)	174
AvaII	GGWCC	2 cut(s)	379, 975
AvrII	CCTAGG	2 cut(s)	382, 395
BaeGI	GKGCMC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	77
BbsI	GAAGAC	2 cut(s)	111, 240
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	403, 555
BccI	CCATC	2 cut(s)	276, 761
BciT130I	CCWGG	3 cut(s)	276, 795, 979
BciVI	GTATCC	1 cut(s)	688
BclI	TGATCA	1 cut(s)	823
BcnI	CCSGG	1 cut(s)	428
BcoDI	GTCTC	3 cut(s)	497, 630, 691
BfaI	CTAG	3 cut(s)	317, 383, 396
BfrI	CTTAAG	1 cut(s)	46
BfuI	GTATCC	1 cut(s)	688
BglII	AGATCT	2 cut(s)	158, 712
BisI	GCNGC	3 cut(s)	290, 392, 569
BlnI	CCTAGG	2 cut(s)	382, 395
BlsI	GCNGC	3 cut(s)	291, 393, 570
Bme1390I	CCNGG	4 cut(s)	276, 428, 795, 979
Bme18I	GGWCC	2 cut(s)	379, 975
BmgT120I	GGNCC	4 cut(s)	73, 74, 379, 975
BmiI	GGNNCC	5 cut(s)	74, 75, 416, 595, 792
BmrFI	CCNGG	4 cut(s)	276, 428, 795, 979
BmrI	ACTGGG	1 cut(s)	947
BmuI	ACTGGG	1 cut(s)	947
BpiI	GAAGAC	2 cut(s)	111, 240
BpmI	CTGGAG	1 cut(s)	473
Bpu14I	TTCGAA	1 cut(s)	174
BpuEI	CTTGAG	2 cut(s)	612, 880
BpuMI	CCSGG	1 cut(s)	428
BsaJI	CCNNGG	2 cut(s)	382, 395
BsaWI	WCCGGW	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 149
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	3 cut(s)	220, 310, 953
BseBI	CCWGG	3 cut(s)	276, 795, 979
BseDI	CCNNGG	2 cut(s)	382, 395
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	2 cut(s)	12, 149
BseMII	CTCAG	4 cut(s)	78, 534, 612, 702
BseNI	ACTGG	3 cut(s)	220, 310, 953
BseSI	GKGCMC	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	403, 555
BshFI	GGCC	3 cut(s)	5, 75, 698
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	3 cut(s)	6, 353, 427
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	2 cut(s)	12, 149
BsmAI	GTCTC	3 cut(s)	497, 630, 691
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	3 cut(s)	5, 75, 698
Bsp119I	TTCGAA	1 cut(s)	174
Bsp120I	GGGCCC	1 cut(s)	73
Bsp1286I	GDGCHC	2 cut(s)	77, 231
Bsp143I	GATC	5 cut(s)	158, 197, 712, 823, 961
BspACI	CCGC	3 cut(s)	24, 289, 424
BspANI	GGCC	3 cut(s)	5, 75, 698
BspCNI	CTCAG	4 cut(s)	79, 535, 611, 701
BspLI	GGNNCC	5 cut(s)	74, 75, 416, 595, 792
BspPI	GGATC	1 cut(s)	205
BspT104I	TTCGAA	1 cut(s)	174
BspTI	CTTAAG	1 cut(s)	46
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	3 cut(s)	220, 310, 953
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	2 cut(s)	382, 395
BssMI	GATC	5 cut(s)	158, 197, 712, 823, 961
BssT1I	CCWWGG	2 cut(s)	382, 395
Bst2UI	CCWGG	3 cut(s)	276, 795, 979
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	1 cut(s)	278
BstAFI	CTTAAG	1 cut(s)	46
BstBI	TTCGAA	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	389, 477
BstDEI	CTNAG	6 cut(s)	87, 543, 598, 688, 702, 716
BstF5I	GGATG	1 cut(s)	262
BstKTI	GATC	5 cut(s)	161, 200, 715, 826, 964
BstMAI	GTCTC	3 cut(s)	497, 630, 691
BstMBI	GATC	5 cut(s)	158, 197, 712, 823, 961
BstMWI	GCNNNNNNNGC	1 cut(s)	397
BstNI	CCWGG	3 cut(s)	276, 795, 979
BstSCI	CCNGG	4 cut(s)	274, 426, 793, 977
BstSLI	GKGCMC	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	403, 555
BstV2I	GAAGAC	2 cut(s)	111, 240
BstX2I	RGATCY	2 cut(s)	158, 712
BstXI	CCANNNNNNTGG	1 cut(s)	275
BstYI	RGATCY	2 cut(s)	158, 712
BsuI	GTATCC	1 cut(s)	688
BsuRI	GGCC	3 cut(s)	5, 75, 698
BtsCI	GGATG	1 cut(s)	262
BtsIMutI	CAGTG	2 cut(s)	762, 960
Cac8I	GCNNGC	2 cut(s)	389, 477
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	4 cut(s)	73, 74, 379, 975
CseI	GACGC	1 cut(s)	646
CviAII	CATG	3 cut(s)	334, 936, 965
DdeI	CTNAG	6 cut(s)	87, 543, 598, 688, 702, 716
DpnI	GATC	5 cut(s)	160, 199, 714, 825, 963
DpnII	GATC	5 cut(s)	158, 197, 712, 823, 961
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco130I	CCWWGG	2 cut(s)	382, 395
Eco24I	GRGCYC	1 cut(s)	77
Eco47I	GGWCC	2 cut(s)	379, 975
Eco57I	CTGAAG	1 cut(s)	44
EcoO109I	RGGNCCY	3 cut(s)	73, 74, 379
EcoRII	CCWGG	3 cut(s)	274, 793, 977
EcoT14I	CCWWGG	2 cut(s)	382, 395
EcoT38I	GRGCYC	1 cut(s)	77
ErhI	CCWWGG	2 cut(s)	382, 395
FaeI	CATG	3 cut(s)	337, 939, 968
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	3 cut(s)	333, 935, 964
FauNDI	CATATG	1 cut(s)	808
FbaI	TGATCA	1 cut(s)	823
Fnu4HI	GCNGC	3 cut(s)	290, 392, 569
FokI	GGATG	1 cut(s)	269
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	3 cut(s)	290, 392, 569
FspBI	CTAG	3 cut(s)	317, 383, 396
GluI	GCNGC	3 cut(s)	290, 392, 569
GsuI	CTGGAG	1 cut(s)	473
HaeIII	GGCC	3 cut(s)	5, 75, 698
HapII	CCGG	3 cut(s)	6, 353, 427
HgaI	GACGC	1 cut(s)	646
Hin1II	CATG	3 cut(s)	337, 939, 968
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HindIII	AAGCTT	2 cut(s)	325, 344
HinfI	GANTC	7 cut(s)	64, 98, 643, 656, 743, 800, 948
HpaII	CCGG	3 cut(s)	6, 353, 427
HphI	GGTGA	2 cut(s)	178, 809
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188III	TCNNGA	5 cut(s)	95, 156, 317, 418, 629
Hpy8I	GTNNAC	1 cut(s)	301
Hpy99I	CGWCG	2 cut(s)	251, 640
HpyAV	CCTTC	2 cut(s)	377, 451
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4V	TGCA	3 cut(s)	391, 407, 475
HpyF10VI	GCNNNNNNNGC	1 cut(s)	397
HpyF3I	CTNAG	6 cut(s)	87, 543, 598, 688, 702, 716
Hsp92II	CATG	3 cut(s)	337, 939, 968
Ksp22I	TGATCA	1 cut(s)	823
Kzo9I	GATC	5 cut(s)	158, 197, 712, 823, 961
LmnI	GCTCC	1 cut(s)	790
Lsp1109I	GCAGC	2 cut(s)	403, 555
MaeI	CTAG	3 cut(s)	317, 383, 396
MalI	GATC	5 cut(s)	160, 199, 714, 825, 963
MboI	GATC	5 cut(s)	158, 197, 712, 823, 961
MflI	RGATCY	2 cut(s)	158, 712
MhlI	GDGCHC	2 cut(s)	77, 231
MluCI	AATT	3 cut(s)	124, 931, 940
MmeI	TCCRAC	2 cut(s)	671, 942
MroXI	GAANNNNTTC	1 cut(s)	180
MseI	TTAA	1 cut(s)	47
MslI	CAYNNNNRTG	1 cut(s)	222
MspA1I	CMGCKG	2 cut(s)	451, 692
MspCI	CTTAAG	1 cut(s)	46
MspI	CCGG	3 cut(s)	6, 353, 427
MspR9I	CCNGG	4 cut(s)	276, 428, 795, 979
MvaI	CCWGG	3 cut(s)	276, 795, 979
MwoI	GCNNNNNNNGC	1 cut(s)	397
NciI	CCSGG	1 cut(s)	428
NdeI	CATATG	1 cut(s)	808
NdeII	GATC	5 cut(s)	158, 197, 712, 823, 961
NlaIII	CATG	3 cut(s)	337, 939, 968
NlaIV	GGNNCC	5 cut(s)	74, 75, 416, 595, 792
NspV	TTCGAA	1 cut(s)	174
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	7 cut(s)	64, 98, 643, 656, 743, 800, 948
PflFI	GACNNNGTC	1 cut(s)	305
PkrI	GCNGC	3 cut(s)	291, 393, 570
PpuMI	RGGWCCY	1 cut(s)	379
Psp5II	RGGWCCY	1 cut(s)	379
Psp6I	CCWGG	3 cut(s)	274, 793, 977
PspGI	CCWGG	3 cut(s)	274, 793, 977
PspN4I	GGNNCC	5 cut(s)	74, 75, 416, 595, 792
PspOMI	GGGCCC	1 cut(s)	73
PspPI	GGNCC	4 cut(s)	73, 74, 379, 975
PspPPI	RGGWCCY	1 cut(s)	379
PsuI	RGATCY	2 cut(s)	158, 712
PsyI	GACNNNGTC	1 cut(s)	305
PvuII	CAGCTG	2 cut(s)	451, 692
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	47
SatI	GCNGC	3 cut(s)	290, 392, 569
Sau3AI	GATC	5 cut(s)	158, 197, 712, 823, 961
Sau96I	GGNCC	4 cut(s)	73, 74, 379, 975
ScrFI	CCNGG	4 cut(s)	276, 428, 795, 979
SduI	GDGCHC	2 cut(s)	77, 231
SfuI	TTCGAA	1 cut(s)	174
SinI	GGWCC	2 cut(s)	379, 975
SmiMI	CAYNNNNRTG	1 cut(s)	222
SmlI	CTYRAG	3 cut(s)	46, 627, 859
SmoI	CTYRAG	3 cut(s)	46, 627, 859
Sse9I	AATT	3 cut(s)	124, 931, 940
SsiI	CCGC	3 cut(s)	24, 289, 424
SspI	AATATT	1 cut(s)	786
SspMI	CTAG	3 cut(s)	317, 383, 396
StyD4I	CCNGG	4 cut(s)	274, 426, 793, 977
StyI	CCWWGG	2 cut(s)	382, 395
TaaI	ACNGT	1 cut(s)	298
TaqI	TCGA	3 cut(s)	174, 200, 900
TasI	AATT	3 cut(s)	124, 931, 940
TauI	GCSGC	1 cut(s)	292
TfiI	GAWTC	7 cut(s)	64, 98, 643, 656, 743, 800, 948
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TscAI	CASTG	2 cut(s)	769, 960
TseI	GCWGC	2 cut(s)	391, 568
TspDTI	ATGAA	5 cut(s)	543, 764, 795, 861, 924
TspRI	CASTG	2 cut(s)	769, 960
Tth111I	GACNNNGTC	1 cut(s)	305
Vha464I	CTTAAG	1 cut(s)	46
VpaK11BI	GGWCC	2 cut(s)	379, 975
XapI	RAATTY	1 cut(s)	931
XbaI	TCTAGA	1 cut(s)	316
XmaJI	CCTAGG	2 cut(s)	382, 395
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	3 cut(s)	317, 383, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.