Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001827

Physical Location & Seq

Genomic Coordinates Forward (+)

3869628 .. 3870218

Gene Structure 591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1032300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCCGGCGGAAGGGTCAACGGCGGTCGAAATTTGTCCGTCCTCAGTGCTTTGCTTCAGAACCAGAGGAGTTCTGAGCCTTTTGATTCTCTGTTCCTTTCTGGGTCATCAACTTCTTCCTCTGCTCATTTTCTGGGTTCAAGATCGATGGTGAGTTTCCAAAATGTACGTGGAGGAAGGGGATTGAATAAGTCATTGTTCCACCAGTATGATCACGAAGATAACAGGGAAGAAGACTTGGGTAAGTATCTCCATCAACTTGGGAAGAAGAGACGGCTAACCGCTGATCAAGTCCAGTTTCTCGAAAAAAGCTTTGATGTGGAAAACAAGCTGGAACCAGAGAGGAAAGTCCTGCTGGCAAAGGACCTTGGCTTGCAGCCTCGGCAGGTTGCGATATGGTTCCAGAACCGCTGGGCGAGGTGGAAGACAAAACACCTTGAAAAGGATTATGAGGTGCTGCAAGCCAATTACAATAATCTCAAGGCTAACTGTGAAAGCCTTTCGAAAGAGAATGATAAATTAAAGGCCGAGCAACGCCAAGCTACTGGCAAGTCAGAGGCAGGGAAGATAGAGGCGTGGATGCAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006417 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009651 GO:0009653 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046983 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

197

Amino Acids

22.4

Weight (kDa)

9.52

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	89 - 142	4.3e-15	Homeodomain
HALZ	PF02183	144 - 177	1e-12	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27045 AT1G27045 AT1G27045 AT1G27045 AT1G27045
fragaria_vesca	FvH4_4g32060 FvH4_5g15520 FvH4_5g15520 FvH4_5g15520
malus_domestica	MD06G1032300.v1.1 MD06G1187600.v1.1 MD13G1030700.v1.1 MD13G1079500.v1.1 MD14G1194000.v1.1 MD16G1079400.v1.1
prunus_persica	Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.1G267300_v2.0.a1 Prupe.5G185900_v2.0.a1
pyrus_communis	pycom06g16680 pycom13g06920 pycom14g16140 pycom16g06860
rosa_chinensis	RchiOBHm_Chr4g0440751 RchiOBHm_Chr7g0180571
rosa_laevigata	RLG00000005254 RLG00000006157
rosa_multiflora	Rmu_sc0000424.1_g000003 Rmu_sc0005690.1_g000017 Rmu_sc0008018.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272780 Rroxscaffold_5G00381510
rosa_rugosa	Rorug04G0327600 Rorug06G0433800
rosa_samantha	Rh4AG379400 Rh4BG392200 Rh4BG392300 Rh4CG406900 Rh4CG407000 Rh4DG386100 Rh7AG035200 Rh7BG035100 Rh7CG036700 Rh7DG035400
rosa_wichuraiana	Rw4G032630 Rw4G032660 Rw7G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	574
Acc36I	ACCTGC	2 cut(s)	376, 574
AciI	CCGC	4 cut(s)	9, 24, 282, 409
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	31
AcuI	CTGAAG	1 cut(s)	41
AfaI	GTAC	1 cut(s)	168
AfiI	CCNNNNNNNGG	2 cut(s)	12, 442
AgsI	TTSAA	3 cut(s)	141, 187, 440
AluBI	AGCT	3 cut(s)	312, 331, 542
AluI	AGCT	3 cut(s)	312, 331, 542
Alw26I	GTCTC	1 cut(s)	265
AoxI	GGCC	2 cut(s)	3, 525
ApeKI	GCWGC	2 cut(s)	376, 457
ApoI	RAATTY	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	364
AsuHPI	GGTGA	1 cut(s)	163
AsuII	TTCGAA	1 cut(s)	503
AvaII	GGWCC	1 cut(s)	364
BbsI	GAAGAC	2 cut(s)	240, 431
BbvI	GCAGC	2 cut(s)	388, 444
BccI	CCATC	2 cut(s)	142, 261
BceAI	ACGGC	2 cut(s)	37, 290
BclI	TGATCA	2 cut(s)	211, 286
BcoDI	GTCTC	1 cut(s)	265
BfuAI	ACCTGC	2 cut(s)	376, 574
BisI	GCNGC	2 cut(s)	377, 458
BlsI	GCNGC	2 cut(s)	378, 459
Bme18I	GGWCC	1 cut(s)	364
BmgT120I	GGNCC	1 cut(s)	364
BmiI	GGNNCC	2 cut(s)	336, 401
BmsI	GCATC	1 cut(s)	570
BpiI	GAAGAC	2 cut(s)	240, 431
Bpu14I	TTCGAA	1 cut(s)	503
BpuEI	CTTGAG	1 cut(s)	464
Bsa29I	ATCGAT	1 cut(s)	146
BsaAI	YACGTR	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	367, 380
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 442
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	3 cut(s)	205, 295, 550
BseCI	ATCGAT	1 cut(s)	146
BseDI	CCNNGG	2 cut(s)	367, 380
BseGI	GGATG	1 cut(s)	585
BseLI	CCNNNNNNNGG	2 cut(s)	12, 442
BseMII	CTCAG	2 cut(s)	58, 66
BseNI	ACTGG	3 cut(s)	205, 295, 550
BseRI	GAGGAG	1 cut(s)	82
BseXI	GCAGC	2 cut(s)	388, 444
BseYI	CCCAGC	1 cut(s)	411
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	5, 527
BshVI	ATCGAT	1 cut(s)	146
BsiEI	CGRYCG	1 cut(s)	28
BsiSI	CCGG	1 cut(s)	6
BslI	CCNNNNNNNGG	2 cut(s)	12, 442
BsmAI	GTCTC	1 cut(s)	265
BsmBI	CGTCTC	1 cut(s)	265
BsnI	GGCC	2 cut(s)	5, 527
Bsp119I	TTCGAA	1 cut(s)	503
Bsp143I	GATC	3 cut(s)	143, 211, 286
BspACI	CCGC	4 cut(s)	9, 24, 282, 409
BspANI	GGCC	2 cut(s)	5, 527
BspCNI	CTCAG	2 cut(s)	57, 67
BspDI	ATCGAT	1 cut(s)	146
BspLI	GGNNCC	2 cut(s)	336, 401
BspMI	ACCTGC	2 cut(s)	376, 574
BspT104I	TTCGAA	1 cut(s)	503
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	3 cut(s)	205, 295, 550
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	2 cut(s)	367, 380
BssMI	GATC	3 cut(s)	143, 211, 286
BssT1I	CCWWGG	1 cut(s)	367
Bst4CI	ACNGT	1 cut(s)	491
Bst6I	CTCTTC	1 cut(s)	263
BstBAI	YACGTR	1 cut(s)	170
BstBI	TTCGAA	1 cut(s)	503
BstC8I	GCNNGC	4 cut(s)	7, 357, 374, 462
BstDEI	CTNAG	2 cut(s)	44, 75
BstENI	CCTNNNNNAGG	1 cut(s)	440
BstF5I	GGATG	1 cut(s)	585
BstKTI	GATC	3 cut(s)	146, 214, 289
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	3 cut(s)	143, 211, 286
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	1 cut(s)	382
BstV1I	GCAGC	2 cut(s)	388, 444
BstV2I	GAAGAC	2 cut(s)	240, 431
BstXI	CCANNNNNNTGG	2 cut(s)	260, 545
Bsu15I	ATCGAT	1 cut(s)	146
BsuRI	GGCC	2 cut(s)	5, 527
BsuTUI	ATCGAT	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	585
BtsIMutI	CAGTG	1 cut(s)	52
BveI	ACCTGC	2 cut(s)	376, 574
Cac8I	GCNNGC	4 cut(s)	7, 357, 374, 462
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	1 cut(s)	364
ClaI	ATCGAT	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	167
CviQI	GTAC	1 cut(s)	167
DdeI	CTNAG	2 cut(s)	44, 75
DpnI	GATC	3 cut(s)	145, 213, 288
DpnII	GATC	3 cut(s)	143, 211, 286
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
EciI	GGCGGA	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	364
Eco57I	CTGAAG	1 cut(s)	41
EcoNI	CCTNNNNNAGG	1 cut(s)	440
EcoO109I	RGGNCCY	1 cut(s)	364
EcoT14I	CCWWGG	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	367
Esp3I	CGTCTC	1 cut(s)	265
FaiI	YATR	3 cut(s)	210, 397, 450
FbaI	TGATCA	2 cut(s)	211, 286
Fnu4HI	GCNGC	2 cut(s)	377, 458
Fsp4HI	GCNGC	2 cut(s)	377, 458
GluI	GCNGC	2 cut(s)	377, 458
GsaI	CCCAGC	1 cut(s)	415
HaeIII	GGCC	2 cut(s)	5, 527
HapII	CCGG	1 cut(s)	6
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HindIII	AAGCTT	1 cut(s)	310
HinfI	GANTC	1 cut(s)	86
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	3 cut(s)	60, 76, 556
Hpy188III	TCNNGA	4 cut(s)	141, 215, 302, 403
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	6, 171
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	3 cut(s)	376, 460, 583
HpyF10VI	GCNNNNNNNGC	1 cut(s)	382
HpyF3I	CTNAG	2 cut(s)	44, 75
HpySE526I	ACGT	1 cut(s)	169
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Ksp22I	TGATCA	2 cut(s)	211, 286
Kzo9I	GATC	3 cut(s)	143, 211, 286
Lsp1109I	GCAGC	2 cut(s)	388, 444
LweI	GCATC	1 cut(s)	570
MaeII	ACGT	1 cut(s)	169
MalI	GATC	3 cut(s)	145, 213, 288
MboI	GATC	3 cut(s)	143, 211, 286
MboII	GAAGA	8 cut(s)	108, 230, 242, 245, 277, 280, 436, 577
MluCI	AATT	3 cut(s)	31, 466, 518
MroNI	GCCGGC	1 cut(s)	5
MseI	TTAA	1 cut(s)	521
MslI	CAYNNNNRTG	1 cut(s)	207
MspA1I	CMGCKG	2 cut(s)	284, 411
MspI	CCGG	1 cut(s)	6
MwoI	GCNNNNNNNGC	1 cut(s)	382
NaeI	GCCGGC	1 cut(s)	7
NdeII	GATC	3 cut(s)	143, 211, 286
NgoMIV	GCCGGC	1 cut(s)	5
NlaIV	GGNNCC	2 cut(s)	336, 401
NmeAIII	GCCGAG	2 cut(s)	361, 553
NspV	TTCGAA	1 cut(s)	503
PaqCI	CACCTGC	1 cut(s)	574
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	378, 459
Ppu21I	YACGTR	1 cut(s)	170
PpuMI	RGGWCCY	1 cut(s)	364
Psp5II	RGGWCCY	1 cut(s)	364
PspFI	CCCAGC	1 cut(s)	411
PspN4I	GGNNCC	2 cut(s)	336, 401
PspPI	GGNCC	1 cut(s)	364
PspPPI	RGGWCCY	1 cut(s)	364
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
RseI	CAYNNNNRTG	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	521
SatI	GCNGC	2 cut(s)	377, 458
Sau3AI	GATC	3 cut(s)	143, 211, 286
Sau96I	GGNCC	1 cut(s)	364
SfaNI	GCATC	1 cut(s)	570
SfuI	TTCGAA	1 cut(s)	503
SinI	GGWCC	1 cut(s)	364
SmiMI	CAYNNNNRTG	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	3 cut(s)	31, 466, 518
SsiI	CCGC	4 cut(s)	9, 24, 282, 409
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	1 cut(s)	491
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	4 cut(s)	28, 146, 303, 503
TasI	AATT	3 cut(s)	31, 466, 518
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	521
Tru9I	TTAA	1 cut(s)	521
TscAI	CASTG	1 cut(s)	52
TseI	GCWGC	2 cut(s)	376, 457
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	364
XagI	CCTNNNNNAGG	1 cut(s)	440
XapI	RAATTY	1 cut(s)	31
XcmI	CCANNNNNNNNNTGG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.