Rh4BG392100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0006138
Physical Location & Seq
Reverse (-)
54462505 .. 54464614
2110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG392100.1

Sequence Viewer

Length: 1935 bp
ATGCGGCTTGCAAGCCCAATAAACAAGACAGCCACAAAGAACAAAAGGAGAGGGAATGCACAGGCCCAACTCCACATTGTCATGATGAGCTCCTTGAGATGCATAGCAAAACACCCAACAATTGCACTAGTAGACTCATCCACCACTCTCAAAGATCTCAAGCAAATCCACACCCAACTCCTCATCAACGGCGTCCTCAACTATCCTCACCTCTCCGGCAATTTTGTTGCCACCGTTGCCGTCCGGAACCCCAACAATTTGGAATATTCCAACCGAATCCTGGACCAATGTGACAACCCAACTCTCTTCGCCTTCAACTCCATGATCAGGGCCTATTCCAAAAGCTCCGCACCCACTAAAAGCTTTCACTTTTACAGCAGAATCCTCCATTCAAGTAACAATCTTCTCCCCGATAACTACACATTCAACTTCTTGGTTCGCACTTCTGCGCAGCTTTCGTCATTTGAGACTGGTCCTTCGGTCCATGGTGCATTAGTAAAGCACGGGTTTGAGAATGACCCGCATGTTCAAAGTGCTTTAATATTTATGTATGCGGAATTGGGTTGCTTGGAGCAATGTCATAGAGTGTTTAGCGGCATTGCCGAGCCTGATTTGGTGTGTCAAACTGCTATTGTGAGCGCTTGTACTAAATGCGGGGATGTAGATTATGCACGGCAATTGTTCGATGAAATGCCTGAGAGAGACCCCATTGCTTGGAATGCGATGATTGCGGGGTACGCGCAATGTGGGAAGTCCAGGGAAGCTTTGGGTTTGTTCCATTTGATGCAAATGGAGGGTGTGAGGGTGAATGAGGTGTGTATGGTTTCGGTGTTCTCGGCGTGTTGTCACTTGGGGGCACTGGATCAAGGGAGATGGGCTCATGCATATATAGAGAGAAACAAGGTGAGGATGACAGTGACATTGGGGACTGCACTCCTTGACATGTATGCGAAATGTGGGAACATGAGTAAGGCCATGGAAGTGTTTTGGGGGATGAAGGAAAAGAATGTGTATACGTGGAGTACTGCCTTGGGGGGACTAGCTATGAATGGCTTTGGTGAGAAGTGTCTTGAGCTTTTCTCAGTCATGGAGAAAGAAGGCGTTCGGCCAAATGAAGTTACCTTTGTTTCGGTTCTTAGGGGTTGTACTGTGGTTGGACTAGTTGAGGAAGGTCGTCGACATTTTGACTCGATGAAAGAATTTTATGGGATTGAACCTCAGCTAGAGCATTATGGGTGCATTGTTGATTTGTATGGCCGAGCTGGGCGTTTAGATGAAGCCCTGAACTTCATTAACAACATGCCAATGAAGCCTCATGCGGGTGCTTGGGGGGCTTTGCTCCACGCTAGTAGAATGTATCGGAATATGGAACTGGGTGAGCTTGCATCGAGAAAGATAGTAGAACTCGAGGACAGGAATCACGGTGCTTATGTGCTTTTGTCCAATATATATGCGGATTCCAAGCTTTATGATGGAGTTAGTAATGTGCGGCAAAATATGAAGGCTAAAGGTGTGAGGAAGCTTCCTGGTTGTAGTGTCATAGAAGTTGATGGGGAAGTTCATGAATTCTTTGCAGGGGACGACAAGTCTCATCCGAGGTATAATGAAATCGAAATGATGCTGAGAGAAATCTCCTGGCGGCTGAAATTAGCAGGTTATGTTGCCAATACCAACCCTGTGCTGTTCGATATAGAAGAAGAAGAGAAAGAGGATGCATTGTTTAAACACAGCGAGAAGTTTGCCATTGCTTTTGGTTTGATCAGTTTGAGAGAAGGAGTGCCCATTAGGATTGTGAAGAACCTCAGGGTCTGTTGGGATTGTCATGATGTAACAAAAATGATATCCAAGATTTTCAATAGAGAGATAATAGTAAGAGATAGAAATAGGTTTCACCATTTTCAAAATGGTGAGTGCTCTTGTAAGGGTTATTGGTGA

Protein Analysis

644

Amino Acids

72.73

Weight (kDa)

7.8

Isoelectric Point (pI)

38.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 235 - 283 1.5e-09 PPR repeat family
PPR PF01535 238 - 267 5.6e-08 PPR repeat
PPR_2 PF13041 335 - 382 3.9e-09 PPR repeat family
E_motif PF20431 453 - 515 1.5e-19 E motif
DYW_deaminase PF14432 552 - 644 7.6e-41 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 450
Acc36I ACCTGC 1 cut(s) 1643
AccB7I CCANNNNNTGG 1 cut(s) 714
AccI GTMKAC 3 cut(s) 132, 1013, 1177
AccII CGCG 1 cut(s) 740
AccIII TCCGGA 1 cut(s) 243
AclWI GGATC 1 cut(s) 870
AcoI YGGCCR 2 cut(s) 1106, 1255
AcsI RAATTY 2 cut(s) 1199, 1565
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 4 cut(s) 646, 737, 1024, 1147
AfeI AGCGCT 1 cut(s) 640
AfiI CCNNNNNNNGG 4 cut(s) 280, 327, 714, 1319
AflIII ACRYGT 1 cut(s) 942
AgsI TTSAA 7 cut(s) 316, 393, 427, 530, 1214, 1855, 1901
AhdI GACNNNNNGTC 1 cut(s) 1585
AhlI ACTAGT 2 cut(s) 127, 1159
AjnI CCWGG 4 cut(s) 279, 755, 1525, 1634
Alw21I GWGCWC 2 cut(s) 92, 1916
Alw26I GTCTC 3 cut(s) 461, 696, 1593
AlwI GGATC 1 cut(s) 870
AlwNI CAGNNNCTG 1 cut(s) 1809
Ama87I CYCGRG 1 cut(s) 1406
Aor13HI TCCGGA 1 cut(s) 243
Aor51HI AGCGCT 1 cut(s) 640
AoxI GGCC 5 cut(s) 63, 330, 972, 1106, 1255
ApeKI GCWGC 1 cut(s) 451
ApoI RAATTY 2 cut(s) 1199, 1565
ArsI GACNNNNNNTTYG 2 cut(s) 460, 492
Asp700I GAANNNNTTC 1 cut(s) 1101
AspLEI GCGC 3 cut(s) 451, 641, 742
AspS9I GGNCC 5 cut(s) 64, 283, 330, 473, 481
AsuHPI GGTGA 7 cut(s) 200, 817, 916, 1070, 1388, 1883, 1919
AvaI CYCGRG 1 cut(s) 1406
AvaII GGWCC 3 cut(s) 283, 473, 481
AxyI CCTNAGG 1 cut(s) 1802
BaeGI GKGCMC 2 cut(s) 859, 1782
BanII GRGCYC 2 cut(s) 92, 880
Bbv12I GWGCWC 2 cut(s) 92, 1916
BbvCI CCTCAGC 1 cut(s) 1218
BbvI GCAGC 1 cut(s) 463
BccI CCATC 3 cut(s) 867, 1466, 1544
BceAI ACGGC 3 cut(s) 205, 224, 689
BcgI CGANNNNNNTGC 2 cut(s) 1721, 1755
BciT130I CCWGG 4 cut(s) 281, 757, 1527, 1636
BclI TGATCA 2 cut(s) 324, 1758
BcoDI GTCTC 3 cut(s) 461, 696, 1593
BcuI ACTAGT 2 cut(s) 127, 1159
BfaI CTAG 5 cut(s) 128, 1040, 1160, 1223, 1347
BfoI RGCGCY 1 cut(s) 642
BfuAI ACCTGC 1 cut(s) 1643
BglII AGATCT 1 cut(s) 154
BisI GCNGC 5 cut(s) 5, 452, 595, 1490, 1640
BlsI GCNGC 5 cut(s) 6, 453, 596, 1491, 1641
BmcAI AGTACT 1 cut(s) 1024
Bme1390I CCNGG 4 cut(s) 281, 757, 1527, 1636
Bme18I GGWCC 3 cut(s) 283, 473, 481
BmeRI GACNNNNNGTC 1 cut(s) 1585
BmeT110I CYCGRG 1 cut(s) 1406
BmgT120I GGNCC 5 cut(s) 64, 283, 330, 473, 481
BmiI GGNNCC 1 cut(s) 248
BmrFI CCNGG 4 cut(s) 281, 757, 1527, 1636
BmrI ACTGGG 1 cut(s) 1382
BmsI GCATC 5 cut(s) 89, 774, 1394, 1608, 1702
BmuI ACTGGG 1 cut(s) 1382
BplI GAGNNNNNCTC 4 cut(s) 862, 894, 1064, 1096
Bpu10I CCTNAGC 1 cut(s) 1218
BpuEI CTTGAG 3 cut(s) 115, 143, 1091
BsaAI YACGTR 1 cut(s) 1017
BsaHI GRCGYC 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 696
BsaJI CCNNGG 5 cut(s) 484, 756, 975, 1029, 1595
BsaWI WCCGGW 1 cut(s) 243
Bsc4I CCNNNNNNNGG 4 cut(s) 280, 327, 714, 1319
Bse1I ACTGG 3 cut(s) 475, 864, 1377
Bse21I CCTNAGG 1 cut(s) 1802
Bse3DI GCAATG 5 cut(s) 581, 597, 708, 749, 1743
BseAI TCCGGA 1 cut(s) 243
BseBI CCWGG 4 cut(s) 281, 757, 1527, 1636
BseDI CCNNGG 5 cut(s) 484, 756, 975, 1029, 1595
BseGI GGATG 6 cut(s) 137, 664, 915, 999, 1591, 1717
BseLI CCNNNNNNNGG 4 cut(s) 280, 327, 714, 1319
BseMI GCAATG 5 cut(s) 581, 597, 708, 749, 1743
BseMII CTCAG 5 cut(s) 687, 1095, 1232, 1613, 1816
BseNI ACTGG 3 cut(s) 475, 864, 1377
BseRI GAGGAG 1 cut(s) 170
BseSI GKGCMC 2 cut(s) 859, 1782
BseXI GCAGC 1 cut(s) 463
BseYI CCCAGC 1 cut(s) 1262
BsgI GTGCAG 1 cut(s) 915
Bsh1236I CGCG 1 cut(s) 740
BshFI GGCC 5 cut(s) 65, 332, 974, 1108, 1257
BsiHKAI GWGCWC 2 cut(s) 92, 1916
BsiHKCI CYCGRG 1 cut(s) 1406
BsiSI CCGG 2 cut(s) 216, 244
BslFI GGGAC 3 cut(s) 940, 1050, 1592
BslI CCNNNNNNNGG 4 cut(s) 280, 327, 714, 1319
BsmAI GTCTC 3 cut(s) 461, 696, 1593
BsmFI GGGAC 3 cut(s) 940, 1050, 1592
BsmI GAATGC 2 cut(s) 61, 724
BsnI GGCC 5 cut(s) 65, 332, 974, 1108, 1257
Bso31I GGTCTC 1 cut(s) 696
BsoBI CYCGRG 1 cut(s) 1406
Bsp1286I GDGCHC 5 cut(s) 92, 859, 880, 1782, 1916
Bsp13I TCCGGA 1 cut(s) 243
Bsp143I GATC 4 cut(s) 154, 324, 862, 1758
Bsp19I CCATGG 2 cut(s) 484, 975
BspANI GGCC 5 cut(s) 65, 332, 974, 1108, 1257
BspCNI CTCAG 5 cut(s) 688, 1094, 1231, 1614, 1815
BspEI TCCGGA 1 cut(s) 243
BspFNI CGCG 1 cut(s) 740
BspHI TCATGA 3 cut(s) 81, 1561, 1822
BspLI GGNNCC 1 cut(s) 248
BspMI ACCTGC 1 cut(s) 1643
BspPI GGATC 1 cut(s) 870
BspTNI GGTCTC 1 cut(s) 696
BsrDI GCAATG 5 cut(s) 581, 597, 708, 749, 1743
BsrI ACTGG 3 cut(s) 475, 864, 1377
BssECI CCNNGG 5 cut(s) 484, 756, 975, 1029, 1595
BssMI GATC 4 cut(s) 154, 324, 862, 1758
BssNAI GTATAC 1 cut(s) 1014
BssNI GRCGYC 1 cut(s) 192
BssT1I CCWWGG 3 cut(s) 484, 975, 1029
Bst1107I GTATAC 1 cut(s) 1014
Bst2UI CCWGG 4 cut(s) 281, 757, 1527, 1636
Bst4CI ACNGT 4 cut(s) 235, 916, 1150, 1424
Bst6I CTCTTC 2 cut(s) 311, 1695
BstACI GRCGYC 1 cut(s) 192
BstBAI YACGTR 1 cut(s) 1017
BstC8I GCNNGC 3 cut(s) 9, 13, 1383
BstDEI CTNAG 6 cut(s) 696, 1081, 1136, 1218, 1622, 1802
BstDSI CCRYGG 2 cut(s) 484, 975
BstF5I GGATG 6 cut(s) 137, 664, 915, 999, 1591, 1717
BstFNI CGCG 1 cut(s) 740
BstH2I RGCGCY 1 cut(s) 642
BstHHI GCGC 3 cut(s) 451, 641, 742
BstKTI GATC 4 cut(s) 157, 327, 865, 1761
BstMAI GTCTC 3 cut(s) 461, 696, 1593
BstMBI GATC 4 cut(s) 154, 324, 862, 1758
BstMWI GCNNNNNNNGC 6 cut(s) 236, 719, 728, 737, 1309, 1331
BstNI CCWGG 4 cut(s) 281, 757, 1527, 1636
BstNSI RCATGY 3 cut(s) 527, 946, 1303
BstSCI CCNGG 4 cut(s) 279, 755, 1525, 1634
BstSLI GKGCMC 2 cut(s) 859, 1782
BstUI CGCG 1 cut(s) 740
BstV1I GCAGC 1 cut(s) 463
BstX2I RGATCY 1 cut(s) 154
BstXI CCANNNNNNTGG 1 cut(s) 259
BstYI RGATCY 1 cut(s) 154
BstZ17I GTATAC 1 cut(s) 1014
Bsu36I CCTNAGG 1 cut(s) 1802
BsuRI GGCC 5 cut(s) 65, 332, 974, 1108, 1257
BtgI CCRYGG 2 cut(s) 484, 975
BtgZI GCGATG 1 cut(s) 737
BtsCI GGATG 6 cut(s) 137, 664, 915, 999, 1591, 1717
BtsIMutI CAGTG 2 cut(s) 857, 921
BveI ACCTGC 1 cut(s) 1643
Cac8I GCNNGC 3 cut(s) 9, 13, 1383
CaiI CAGNNNCTG 1 cut(s) 1809
CciI TCATGA 3 cut(s) 81, 1561, 1822
CfoI GCGC 3 cut(s) 451, 641, 742
Cfr13I GGNCC 5 cut(s) 64, 283, 330, 473, 481
CseI GACGC 1 cut(s) 181
Csp6I GTAC 4 cut(s) 645, 736, 1023, 1146
CviQI GTAC 4 cut(s) 645, 736, 1023, 1146
DdeI CTNAG 6 cut(s) 696, 1081, 1136, 1218, 1622, 1802
DpnI GATC 4 cut(s) 156, 326, 864, 1760
DpnII GATC 4 cut(s) 154, 324, 862, 1758
DraI TTTAAA 1 cut(s) 1723
DriI GACNNNNNGTC 1 cut(s) 1585
EaeI YGGCCR 2 cut(s) 1106, 1255
Eam1104I CTCTTC 2 cut(s) 311, 1695
Eam1105I GACNNNNNGTC 1 cut(s) 1585
EarI CTCTTC 2 cut(s) 311, 1695
Ecl136II GAGCTC 1 cut(s) 90
Eco130I CCWWGG 3 cut(s) 484, 975, 1029
Eco24I GRGCYC 2 cut(s) 92, 880
Eco31I GGTCTC 1 cut(s) 696
Eco32I GATATC 1 cut(s) 1842
Eco47I GGWCC 3 cut(s) 283, 473, 481
Eco47III AGCGCT 1 cut(s) 640
Eco53kI GAGCTC 1 cut(s) 90
Eco81I CCTNAGG 1 cut(s) 1802
Eco88I CYCGRG 1 cut(s) 1406
EcoICRI GAGCTC 1 cut(s) 90
EcoO109I RGGNCCY 1 cut(s) 330
EcoRI GAATTC 1 cut(s) 1565
EcoRII CCWGG 4 cut(s) 279, 755, 1525, 1634
EcoRV GATATC 1 cut(s) 1842
EcoT14I CCWWGG 3 cut(s) 484, 975, 1029
EcoT22I ATGCAT 3 cut(s) 104, 886, 1717
EcoT38I GRGCYC 2 cut(s) 92, 880
ErhI CCWWGG 3 cut(s) 484, 975, 1029
FaqI GGGAC 3 cut(s) 940, 1050, 1592
FauI CCCGC 4 cut(s) 528, 647, 724, 1312
FbaI TGATCA 2 cut(s) 324, 1758
FblI GTMKAC 3 cut(s) 132, 1013, 1177
Fnu4HI GCNGC 5 cut(s) 5, 452, 595, 1490, 1640
FokI GGATG 6 cut(s) 124, 671, 922, 1006, 1578, 1724
FriOI GRGCYC 2 cut(s) 92, 880
Fsp4HI GCNGC 5 cut(s) 5, 452, 595, 1490, 1640
FspBI CTAG 5 cut(s) 128, 1040, 1160, 1223, 1347
FspI TGCGCA 1 cut(s) 450
GlaI GCGC 3 cut(s) 450, 640, 741
GluI GCNGC 5 cut(s) 5, 452, 595, 1490, 1640
GsaI CCCAGC 1 cut(s) 1266
HaeII RGCGCY 1 cut(s) 642
HaeIII GGCC 5 cut(s) 65, 332, 974, 1108, 1257
HapII CCGG 2 cut(s) 216, 244
HgaI GACGC 1 cut(s) 181
HhaI GCGC 3 cut(s) 451, 641, 742
Hin1I GRCGYC 1 cut(s) 192
Hin6I GCGC 3 cut(s) 449, 639, 740
HinP1I GCGC 3 cut(s) 449, 639, 740
HincII GTYRAC 1 cut(s) 1178
HindII GTYRAC 1 cut(s) 1178
HindIII AAGCTT 4 cut(s) 361, 762, 1463, 1520
HinfI GANTC 6 cut(s) 134, 276, 381, 1187, 1417, 1457
HpaII CCGG 2 cut(s) 216, 244
HphI GGTGA 7 cut(s) 200, 817, 916, 1070, 1388, 1883, 1919
Hpy166II GTNNAC 3 cut(s) 133, 1014, 1178
Hpy188I TCNGA 2 cut(s) 1362, 1596
Hpy188III TCNNGA 6 cut(s) 82, 244, 1070, 1389, 1562, 1823
Hpy8I GTNNAC 3 cut(s) 133, 1014, 1178
Hpy99I CGWCG 1 cut(s) 1179
HpyAV CCTTC 7 cut(s) 322, 486, 991, 1091, 1163, 1495, 1766
HpyCH4III ACNGT 4 cut(s) 235, 916, 1150, 1424
HpyCH4IV ACGT 1 cut(s) 1016
HpyF10VI GCNNNNNNNGC 6 cut(s) 236, 719, 728, 737, 1309, 1331
HpyF3I CTNAG 6 cut(s) 696, 1081, 1136, 1218, 1622, 1802
HpySE526I ACGT 1 cut(s) 1016
Hsp92I GRCGYC 1 cut(s) 192
HspAI GCGC 3 cut(s) 449, 639, 740
Kpn2I TCCGGA 1 cut(s) 243
Ksp22I TGATCA 2 cut(s) 324, 1758
Kzo9I GATC 4 cut(s) 154, 324, 862, 1758
LmnI GCTCC 4 cut(s) 95, 350, 571, 1344
Lsp1109I GCAGC 1 cut(s) 463
LweI GCATC 5 cut(s) 89, 774, 1394, 1608, 1702
MaeI CTAG 5 cut(s) 128, 1040, 1160, 1223, 1347
MaeII ACGT 1 cut(s) 1016
MaeIII GTNAC 6 cut(s) 290, 395, 845, 916, 1117, 1828
MalI GATC 4 cut(s) 156, 326, 864, 1760
MboI GATC 4 cut(s) 154, 324, 862, 1758
MboII GAAGA 6 cut(s) 298, 395, 1706, 1709, 1712, 1807
MfeI CAATTG 2 cut(s) 120, 677
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 5 cut(s) 92, 859, 880, 1782, 1916
MluCI AATT 8 cut(s) 120, 220, 256, 557, 677, 1199, 1565, 1646
MlyI GAGTC 2 cut(s) 128, 1181
MmeI TCCRAC 2 cut(s) 294, 1135
Mph1103I ATGCAT 3 cut(s) 104, 886, 1717
MroI TCCGGA 1 cut(s) 243
MroXI GAANNNNTTC 1 cut(s) 1101
MseI TTAA 3 cut(s) 539, 1293, 1722
MslI CAYNNNNRTG 4 cut(s) 80, 980, 1304, 1320
MspI CCGG 2 cut(s) 216, 244
MspR9I CCNGG 4 cut(s) 281, 757, 1527, 1636
MssI GTTTAAAC 1 cut(s) 1723
MunI CAATTG 2 cut(s) 120, 677
Mva1269I GAATGC 2 cut(s) 61, 724
MvaI CCWGG 4 cut(s) 281, 757, 1527, 1636
MvnI CGCG 1 cut(s) 740
MwoI GCNNNNNNNGC 6 cut(s) 236, 719, 728, 737, 1309, 1331
NcoI CCATGG 2 cut(s) 484, 975
NdeII GATC 4 cut(s) 154, 324, 862, 1758
NlaIV GGNNCC 1 cut(s) 248
NmeAIII GCCGAG 3 cut(s) 628, 815, 1283
NmuCI GTSAC 3 cut(s) 290, 845, 916
NsbI TGCGCA 1 cut(s) 450
NsiI ATGCAT 3 cut(s) 104, 886, 1717
NspI RCATGY 3 cut(s) 527, 946, 1303
PaeR7I CTCGAG 1 cut(s) 1406
PagI TCATGA 3 cut(s) 81, 1561, 1822
PciI ACATGT 1 cut(s) 942
PctI GAATGC 2 cut(s) 61, 724
PdmI GAANNNNTTC 1 cut(s) 1101
PfeI GAWTC 4 cut(s) 276, 381, 1417, 1457
PflMI CCANNNNNTGG 1 cut(s) 714
PfoI TCCNGGA 1 cut(s) 279
PkrI GCNGC 5 cut(s) 6, 453, 596, 1491, 1641
PleI GAGTC 2 cut(s) 128, 1181
PmeI GTTTAAAC 1 cut(s) 1723
PpsI GAGTC 2 cut(s) 128, 1181
Ppu21I YACGTR 1 cut(s) 1017
PscI ACATGT 1 cut(s) 942
Psp124BI GAGCTC 1 cut(s) 92
Psp6I CCWGG 4 cut(s) 279, 755, 1525, 1634
PspFI CCCAGC 1 cut(s) 1262
PspGI CCWGG 4 cut(s) 279, 755, 1525, 1634
PspN4I GGNNCC 1 cut(s) 248
PspPI GGNCC 5 cut(s) 64, 283, 330, 473, 481
PspXI VCTCGAGB 1 cut(s) 1406
PstNI CAGNNNCTG 1 cut(s) 1809
PsuI RGATCY 1 cut(s) 154
RsaI GTAC 4 cut(s) 646, 737, 1024, 1147
RsaNI GTAC 4 cut(s) 645, 736, 1023, 1146
RseI CAYNNNNRTG 4 cut(s) 80, 980, 1304, 1320
SacI GAGCTC 1 cut(s) 92
SalI GTCGAC 1 cut(s) 1176
SaqAI TTAA 3 cut(s) 539, 1293, 1722
SatI GCNGC 5 cut(s) 5, 452, 595, 1490, 1640
Sau3AI GATC 4 cut(s) 154, 324, 862, 1758
Sau96I GGNCC 5 cut(s) 64, 283, 330, 473, 481
ScaI AGTACT 1 cut(s) 1024
SchI GAGTC 2 cut(s) 128, 1181
ScrFI CCNGG 4 cut(s) 281, 757, 1527, 1636
SduI GDGCHC 5 cut(s) 92, 859, 880, 1782, 1916
SfaNI GCATC 5 cut(s) 89, 774, 1394, 1608, 1702
Sfr274I CTCGAG 1 cut(s) 1406
SinI GGWCC 3 cut(s) 283, 473, 481
SlaI CTCGAG 1 cut(s) 1406
SmiMI CAYNNNNRTG 4 cut(s) 80, 980, 1304, 1320
SmlI CTYRAG 4 cut(s) 94, 158, 1070, 1406
SmoI CTYRAG 4 cut(s) 94, 158, 1070, 1406
SpeI ACTAGT 2 cut(s) 127, 1159
Sse9I AATT 8 cut(s) 120, 220, 256, 557, 677, 1199, 1565, 1646
SspI AATATT 2 cut(s) 266, 543
SspMI CTAG 5 cut(s) 128, 1040, 1160, 1223, 1347
SstI GAGCTC 1 cut(s) 92
StyD4I CCNGG 4 cut(s) 279, 755, 1525, 1634
StyI CCWWGG 3 cut(s) 484, 975, 1029
TaaI ACNGT 4 cut(s) 235, 916, 1150, 1424
TaiI ACGT 1 cut(s) 1019
TaqI TCGA 7 cut(s) 684, 1177, 1190, 1388, 1407, 1611, 1686
TaqII GACCGA 1 cut(s) 469
TasI AATT 8 cut(s) 120, 220, 256, 557, 677, 1199, 1565, 1646
TatI WGTACW 3 cut(s) 644, 1022, 1145
TauI GCSGC 4 cut(s) 7, 597, 1492, 1642
TfiI GAWTC 4 cut(s) 276, 381, 1417, 1457
Tru1I TTAA 3 cut(s) 539, 1293, 1722
Tru9I TTAA 3 cut(s) 539, 1293, 1722
TscAI CASTG 2 cut(s) 864, 921
TseFI GTSAC 3 cut(s) 290, 845, 916
TseI GCWGC 1 cut(s) 451
Tsp45I GTSAC 3 cut(s) 290, 845, 916
TspRI CASTG 2 cut(s) 864, 921
Van91I CCANNNNNTGG 1 cut(s) 714
VpaK11BI GGWCC 3 cut(s) 283, 473, 481
XapI RAATTY 2 cut(s) 1199, 1565
XceI RCATGY 3 cut(s) 527, 946, 1303
XcmI CCANNNNNNNNNTGG 3 cut(s) 277, 763, 1901
XhoI CTCGAG 1 cut(s) 1406
XmiI GTMKAC 3 cut(s) 132, 1013, 1177
XmnI GAANNNNTTC 1 cut(s) 1101
XspI CTAG 5 cut(s) 128, 1040, 1160, 1223, 1347
ZrmI AGTACT 1 cut(s) 1024
Zsp2I ATGCAT 3 cut(s) 104, 886, 1717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.