Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006138

Physical Location & Seq

Genomic Coordinates Reverse (-)

62740831 .. 62741274

Gene Structure 444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40864

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAAGGCTAAAGTTGTGAGTAAGCTTCCTGGTTGCAGTGTCATAGAAGTTGATGGGGAAGTTCATGAATTCTTTGCAGGGGACGACAAGTCTCATCCGAGGTATAATGAAATCGAAATGATGCTGGGAGAAATCTCCCGGCGGCTGAAATTAGCAGGTTATGTTGCCAATACCAACCCTGTGCTGTTCGATATAGAAGAAGAAGAGAAAGGGGATGCATTGTTTAAACACAGCGAGAAGTTTGCCATTGCTTTTGGTTTGATCAGTTTGAGAGAAGGGGTGCCCATTAGGATTGTGAAGAACATCAGGATCTGTTGGGATTGTCATGATGTAACAAAAATGATGTCCAAGATTTTCAATAGAGAGATTATGGTAAGAGATAGAAATAGGTTTCACCATTTTCAAAATGGTGAGGAAAATAAAGCTGGATTTACCATTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

147

Amino Acids

16.94

Weight (kDa)

6.6

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Eplus_motif	PF20430	21 - 49	3.5e-06	E+ motif
DYW_deaminase	PF14432	53 - 138	6.7e-35	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40405 AT5G40405
fragaria_vesca	FvH4_4g32050
malus_domestica	MD13G1079400.v1.1 MD16G1079200.v1.1 MD16G1079300.v1.1
prunus_persica	Prupe.1G267400_v2.0.a1
pyrus_communis	pycom13g06910 pycom16g06850
rosa_chinensis	RchiOBHm_Chr1g0381771 RchiOBHm_Chr4g0440691 RchiOBHm_Chr4g0440711
rosa_laevigata	RLG00000006158 RLG00000008805 RLG00000026207
rosa_multiflora	Rmu_sc0000463.1_g000002 Rmu_sc0008418.1_g000010
rosa_roxburghii	Rroxscaffold_5G00381500 Rroxscaffold_7G00185760
rosa_rugosa	Rorug01G0430800 Rorug04G0327600
rosa_samantha	Rh1BG411600 Rh4AG379300 Rh4BG131000 Rh4BG392100
rosa_wichuraiana	Rw1G039640 Rw4G011000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	280
AciI	CCGC	1 cut(s)	142
AclWI	GGATC	1 cut(s)	317
AcsI	RAATTY	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	358, 404
AhdI	GACNNNNNGTC	1 cut(s)	88
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	2 cut(s)	25, 425
AluI	AGCT	2 cut(s)	25, 425
Alw26I	GTCTC	1 cut(s)	96
AlwI	GGATC	1 cut(s)	317
AlwNI	CAGNNNCTG	1 cut(s)	312
ApoI	RAATTY	1 cut(s)	68
ArsI	GACNNNNNNTTYG	2 cut(s)	329, 361
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	2 cut(s)	386, 422
BaeGI	GKGCMC	1 cut(s)	285
BanI	GGYRCC	1 cut(s)	280
BccI	CCATC	1 cut(s)	47
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	1 cut(s)	30
BclI	TGATCA	1 cut(s)	261
BcnI	CCSGG	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	96
BfuAI	ACCTGC	1 cut(s)	146
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
Bme1390I	CCNGG	2 cut(s)	30, 139
BmeRI	GACNNNNNGTC	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	2 cut(s)	30, 139
BmsI	GCATC	2 cut(s)	111, 205
BpuMI	CCSGG	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	98
Bse3DI	GCAATG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	98
BseGI	GGATG	2 cut(s)	94, 220
BseMI	GCAATG	1 cut(s)	246
BseSI	GKGCMC	1 cut(s)	285
BseYI	CCCAGC	1 cut(s)	124
BshNI	GGYRCC	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	139
BslFI	GGGAC	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	2 cut(s)	261, 309
BspACI	CCGC	1 cut(s)	142
BspHI	TCATGA	2 cut(s)	64, 325
BspLI	GGNNCC	1 cut(s)	282
BspMI	ACCTGC	1 cut(s)	146
BspPI	GGATC	1 cut(s)	317
BspT107I	GGYRCC	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	98
BssMI	GATC	2 cut(s)	261, 309
Bst2UI	CCWGG	1 cut(s)	30
Bst6I	CTCTTC	1 cut(s)	198
BstF5I	GGATG	2 cut(s)	94, 220
BstKTI	GATC	2 cut(s)	264, 312
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	2 cut(s)	261, 309
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	2 cut(s)	28, 137
BstSLI	GKGCMC	1 cut(s)	285
BstX2I	RGATCY	1 cut(s)	309
BstYI	RGATCY	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	94, 220
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	43
BveI	ACCTGC	1 cut(s)	146
CaiI	CAGNNNCTG	1 cut(s)	312
CciI	TCATGA	2 cut(s)	64, 325
CviAII	CATG	2 cut(s)	65, 326
CviJI	RGCY	4 cut(s)	8, 25, 145, 425
CviKI_1	RGCY	4 cut(s)	8, 25, 145, 425
DpnI	GATC	2 cut(s)	263, 311
DpnII	GATC	2 cut(s)	261, 309
DraI	TTTAAA	1 cut(s)	226
DriI	GACNNNNNGTC	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	198
Eam1105I	GACNNNNNGTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	198
EcoRI	GAATTC	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	28
EcoT22I	ATGCAT	1 cut(s)	220
FaeI	CATG	2 cut(s)	68, 329
FaiI	YATR	7 cut(s)	44, 66, 105, 162, 194, 327, 371
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	2 cut(s)	64, 325
FbaI	TGATCA	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	143
FokI	GGATG	2 cut(s)	81, 227
Fsp4HI	GCNGC	1 cut(s)	143
GluI	GCNGC	1 cut(s)	143
GsaI	CCCAGC	1 cut(s)	128
HapII	CCGG	1 cut(s)	139
Hin1II	CATG	2 cut(s)	68, 329
HindIII	AAGCTT	1 cut(s)	23
HpaII	CCGG	1 cut(s)	139
HphI	GGTGA	2 cut(s)	386, 422
Hpy188I	TCNGA	1 cut(s)	99
Hpy188III	TCNNGA	3 cut(s)	65, 307, 326
HpyAV	CCTTC	1 cut(s)	269
HpyCH4V	TGCA	3 cut(s)	36, 77, 218
Hsp92II	CATG	2 cut(s)	68, 329
Ksp22I	TGATCA	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	261, 309
LpnPI	CCDG	9 cut(s)	15, 42, 63, 110, 141, 152, 192, 292, 411
LweI	GCATC	2 cut(s)	111, 205
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	2 cut(s)	263, 311
MboI	GATC	2 cut(s)	261, 309
MboII	GAAGA	4 cut(s)	209, 212, 215, 310
MflI	RGATCY	1 cut(s)	309
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	2 cut(s)	68, 149
MnlI	CCTC	2 cut(s)	93, 406
Mph1103I	ATGCAT	1 cut(s)	220
MseI	TTAA	1 cut(s)	225
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	2 cut(s)	30, 139
MssI	GTTTAAAC	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	30
NciI	CCSGG	1 cut(s)	139
NdeII	GATC	2 cut(s)	261, 309
NlaIII	CATG	2 cut(s)	68, 329
NlaIV	GGNNCC	1 cut(s)	282
NsiI	ATGCAT	1 cut(s)	220
PagI	TCATGA	2 cut(s)	64, 325
PkrI	GCNGC	1 cut(s)	144
PmeI	GTTTAAAC	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	282
PstNI	CAGNNNCTG	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	2 cut(s)	261, 309
ScrFI	CCNGG	2 cut(s)	30, 139
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	5 cut(s)	27, 104, 160, 392, 427
SfaNI	GCATC	2 cut(s)	111, 205
Sse9I	AATT	2 cut(s)	68, 149
SsiI	CCGC	1 cut(s)	142
StyD4I	CCNGG	2 cut(s)	28, 137
TaqI	TCGA	2 cut(s)	114, 189
TasI	AATT	2 cut(s)	68, 149
TauI	GCSGC	1 cut(s)	145
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	43
TspDTI	ATGAA	4 cut(s)	17, 53, 81, 123
TspRI	CASTG	1 cut(s)	43
XapI	RAATTY	1 cut(s)	68
XcmI	CCANNNNNNNNNTGG	1 cut(s)	404
Zsp2I	ATGCAT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.